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    Lsm1 protein [Homo sapiens]

    GenBank: CAB45865.1

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      Analyze this sequence

      • Run BLAST
        Find regions of similarity between this sequence and other sequences using BLAST.
      • Identify Conserved Domains
        View conserved domains detected in this protein sequence using CD-search.
      • Highlight Sequence Features
        Opens the Highlight Feature Bar and highlights feature annotations from the FEATURES table of the record. The Highlight Feature Bar can be used to navigate to and highlight other features and provides links to display the highlighted region separately. Links in the FEATURES table will also highlight the corresponding region of the sequence. More...
      • Find in this Sequence
        Finds sub-sequences or patterns in the sequence and highlights the matching regions. The tool works with standard single letter nucleotide or protein codes including ambiguities and can match Prosite patterns in protein sequences. More...

      Articles about the LSM1 gene

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      Identical proteins for CAB45865.1

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      Pathways for the LSM1 gene

      • RNA degradation
        RNA degradationThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay ex ... [bsid117291]
      • Lsm 1-7 complex
        Lsm 1-7 complexStructural complex; Genetic information processing; Spliceosome ... [bsid413462]
      • mRNA Decay by 5' to 3' Exoribonuclease
        mRNA Decay by 5' to 3' ExoribonucleaseDegradation of mRNA from 5' to 3' occurs in three steps. First, the mRNA is bound at its 3' end by the Lsm1-7 complex. The bound Lsm1-7 may prevent nucleases from accessing the 3' end. Second, the 7-m ... [bsid160996]
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      Reference sequence information

      • RefSeq protein
        See the reference protein sequence for U6 snRNA-associated Sm-like protein LSm1 (NP_055277.1).

      More about the LSM1 gene

      Homologs of the LSM1 gene

      LinkOut to external resources

      Related information

      • BLink
        BLAST Link. Pre-computed sequence similarity results (BLAST) including alignments for the current protein against the NCBI nr protein database. Organism specific, RefSeq and other database subsets are available as well as access to a pre-computed multiple alignment.
      • Related Sequences
        Protein sequences related by sequence similarity (BLAST) score to the current records.
      • Identical Proteins
        Proteins with identical sequences to the records in the current set.
      • BioSystems
        Pathways and other biosystems containing the current proteins.
      • CDD Search Results
        Graphical display of conserved domains identified in the protein using RPS-BLAST. The concise results (top-scoring hits) are shown by default, with an option to view the full results, if desired. Click on any domain footprint in the graphical display to see more details and to view the query protein sequence embedded in the domain model’s multiple sequence alignment.
      • Conserved Domains (Concise)
        Concise (top-scoring) list of conserved domains present in the current proteins as determined by a Conserved Domain Database search using RPS-BLAST. For each region on a protein query sequence, this set includes: (a) a specific hit, if one is available, (b) the conserved domain superfamily, and (c) the best-scoring hit that is classified as a multi-domain model, if the alignment is near-complete with respect to that multidomain model footprint.
      • Conserved Domains (Full)
        Full list of Conserved domains present in the current proteins as determined by a Conserved Domain Database search using RPS-BLAST. This set includes all domain models that meet or exceed the RPS-BLAST threshold for statistical significance, as well as the conserved domain superfamilies to which they belong.
      • Domain Relatives
        Conserved Domain Architecture Retrieval Tool (cDART) results for proteins in the current set. cDART identifies proteins that have similar kinds of conserved domains with similar organization.
      • Encoding mRNA
        Link from protein to encoding mRNA
      • Full text in PMC
        Free full-text articles in PubMed central that cite protein records in the current set.
      • Gene
        Gene records referencing the current protein sequence records. Sequences included in Gene records are added manually by NCBI.
      • Gene Genotype
        Genotype reports for single nucleotide polymorphisms (SNPs) associated with the current records.
      • GeneView in dbSNP
        Geneview in dbSNP showing single nucleotide polymorphisms (SNPs) mapped to the genes associated with the current records.
      • Map Viewer
        Graphical Map Viewer display of the current proteins mapped to assembled genomes. Protein sequences are aligned through the corresponding mRNA sequence.
      • Nucleotide
        Nucleotide records that are the source of protein records in the current set. The protein sequences are generated through translation of coding region features on the nucleotide records.
      • OMIM
        Online Mendelian Inheritance in Man (OMIM) records that refer to protein records in the current set.
      • PubMed
        PubMed articles that cite the protein records in the current set. These are articles that report the International Nucleotide Database Collaboration (DDBJ, EMBL, GenBank) records. These articles are also linked to Reference Sequences derived from the GenBank records.
      • PubMed (Weighted)
        PubMed articles associated with the current protein record through related Gene database records. These articles include Reference into Function, citations in related OMIM, and those associated with sequences in the Gene record.
      • Related Structures (List)
        List of three dimensional structure records that contain one or more protein molecules similar in sequence to the current protein(s). Each 3D structure and its corresponding sequence data can be viewed interactively in the free Cn3D tool.
      • Related Structures (Summary)
        Graphical summary of three dimensional structures that contain one or more protein molecules similar in sequence to your query protein. Alignment footprints indicate regions of similarity between the query protein and the structure-based protein, with an option to view the 3D structure and corresponding sequence alignment interactively in the free Cn3D tool.
      • Taxonomy
        NCBI Taxonomy entries and classification information for the source organisms of the current set of records.

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