NCBI
Cow genome overview page (Annotation Release 103)
Cow genome overview page (5.2)
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Region Shown:

Bos taurus (cattle)  Annotation Release 103 (Current)BLAST cattle sequences
Chromosome: 1 2 3 4 5 [ 6 ] 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 X Y MT
 Master Map: Genes On Sequence Summary of Maps mapsnoptions.gif 
Region Displayed: 0-119M bp   Download/View Sequence/Evidence

Summary of Maps:
Map 1: ContigTable View
Region Displayed: 0-119M bp   Download/View Sequence/Evidence
Total Contigs On Chromosome: 138
Contigs Labeled: 34 Total Contigs in Region: 138
Map 2: Bos taurus UniGene ClustersTable View
Region Displayed: 0-119M bp   Download/View Sequence/Evidence
Total Transcript alignments On Chromosome: 1479
UniGene Clusters Labeled: 34 Total Transcript alignments in Region: 1479
Histogram Data: Tick Width=240,844bp/pixel, Max Height=4169 transcripts (logarithmic scale)
Map 3: Genes On SequenceTable View
Region Displayed: 0-119M bp   Download/View Sequence/Evidence
Total Genes On Chromosome: 968
Genes Labeled: 20 Total Genes in Region: 968
UniGeneBt.102079
UniGeneBt.102104
UniGeneBt.102726
UniGeneBt.103997
UniGeneBt.11446
UniGeneBt.13181
UniGeneBt.173
UniGeneBt.24324
UniGeneBt.24569
UniGeneBt.26656
UniGeneBt.27398
UniGeneBt.36167
UniGeneBt.46431
UniGeneBt.60938
UniGeneBt.64743
UniGeneBt.66162
UniGeneBt.67878
UniGeneBt.6800
UniGeneBt.68103
UniGeneBt.7156
UniGeneBt.89255
UniGeneBt.92543
SequenceNW_003103996.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103994.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103992.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103991.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103990.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103989.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103985.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103984.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103983.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103982.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103981.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103980.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103978.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103977.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103976.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103975.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103974.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103973.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103972.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103971.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103970.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103969.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103968.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103967.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103966.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103964.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103962.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103961.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103960.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103959.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103957.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103952.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103949.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
SequenceNW_003103948.1
Bos taurus breed Hereford chromosome 6 genomic scaffold, alternate assembly Bos_taurus_UMD_3.1, whole genome shotgun sequence
Bos taurus breed Hereford chromosome 6 genomic scaffold, Bos_taurus_UMD_3.1, whole genome shotgun sequence
UniGeneBt.105114
UniGeneBt.105230
UniGeneBt.109462
UniGeneBt.111362
UniGeneBt.111488
UniGeneBt.111717
UniGeneBt.111878
UniGeneBt.112161
UniGeneBt.112384
UniGeneBt.112406
UniGeneBt.112407
UniGeneBt.112450
Chromosome
6
Position
117,933,690 - 118,942,168 (1M)
Orientation
+
Chromosome
6
Position
117,142,174 - 117,893,020 (0.8M)
Orientation
+
Chromosome
6
Position
111,996,198 - 116,999,198 (5M)
Orientation
+
Chromosome
6
Position
110,885,342 - 111,994,305 (1.1M)
Orientation
+
Chromosome
6
Position
110,258,198 - 110,874,439 (0.6M)
Orientation
+
Chromosome
6
Position
109,315,391 - 110,254,113 (0.9M)
Orientation
+
Chromosome
6
Position
107,375,293 - 108,868,488 (1.5M)
Orientation
+
Chromosome
6
Position
105,447,653 - 107,369,986 (1.9M)
Orientation
+
Chromosome
6
Position
99,915,000 - 105,438,907 (5.5M)
Orientation
+
Chromosome
6
Position
98,679,373 - 99,913,355 (1.2M)
Orientation
+
Chromosome
6
Position
95,018,860 - 98,677,883 (3.7M)
Orientation
+
Chromosome
6
Position
87,691,559 - 95,015,044 (7.3M)
Orientation
+
Chromosome
6
Position
82,495,325 - 87,388,191 (4.9M)
Orientation
+
Chromosome
6
Position
81,147,625 - 82,494,033 (1.3M)
Orientation
+
Chromosome
6
Position
78,348,726 - 81,125,469 (2.8M)
Orientation
+
Chromosome
6
Position
68,443,313 - 78,346,240 (9.9M)
Orientation
+
Chromosome
6
Position
63,593,472 - 68,440,727 (4.8M)
Orientation
+
Chromosome
6
Position
56,206,341 - 63,442,672 (7.2M)
Orientation
+
Chromosome
6
Position
52,094,466 - 56,204,137 (4.1M)
Orientation
+
Chromosome
6
Position
50,770,229 - 52,090,632 (1.3M)
Orientation
+
Chromosome
6
Position
33,347,149 - 50,763,676 (17.4M)
Orientation
+
Chromosome
6
Position
32,176,237 - 33,346,061 (1.2M)
Orientation
+
Chromosome
6
Position
27,951,554 - 32,172,867 (4.2M)
Orientation
+
Chromosome
6
Position
26,972,384 - 27,950,328 (1M)
Orientation
+
Chromosome
6
Position
26,402,699 - 26,969,690 (0.6M)
Orientation
+
Chromosome
6
Position
23,840,322 - 26,240,632 (2.4M)
Orientation
+
Chromosome
6
Position
23,141,470 - 23,792,386 (0.7M)
Orientation
+
Chromosome
6
Position
11,017,407 - 23,118,345 (12.1M)
Orientation
+
Chromosome
6
Position
8,768,719 - 11,010,815 (2.2M)
Orientation
+
Chromosome
6
Position
7,177,233 - 8,767,714 (1.6M)
Orientation
+
Chromosome
6
Position
6,611,000 - 6,990,070 (379.1K)
Orientation
+
Chromosome
6
Position
5,569,909 - 6,146,183 (0.6M)
Orientation
+
Chromosome
6
Position
451,732 - 5,302,797 (4.9M)
Orientation
+
Chromosome
6
Position
1 - 433,106 (433.1K)
Orientation
+
Chromosome
6
Position
106,466,410 - 107,357,242 (0.9M)
Chromosome
6
Position
102,120,975 - 102,666,722 (0.5M)
Chromosome
6
Position
102,224,171 - 102,594,186 (370K)
Chromosome
6
Position
106,483,438 - 107,356,716 (0.9M)
Chromosome
6
Position
51,536,863 - 52,009,280 (472.4K)
Chromosome
6
Position
41,236,270 - 41,642,320 (406.1K)
Chromosome
6
Position
92,539,254 - 92,539,370 (117bp)
Chromosome
6
Position
107,505,447 - 107,547,395 (41,949bp)
Chromosome
6
Position
64,486,959 - 64,750,899 (263.9K)
Chromosome
6
Position
59,593,796 - 59,611,369 (17,574bp)
Chromosome
6
Position
61,410,664 - 61,411,074 (411bp)
Chromosome
6
Position
95,882,747 - 95,884,594 (1,848bp)
Chromosome
6
Position
95,797,021 - 95,805,971 (8,951bp)
Chromosome
6
Position
101,090,297 - 101,095,292 (4,996bp)
Chromosome
6
Position
92,450,670 - 92,484,567 (33,898bp)
Chromosome
6
Position
16,702,392 - 16,716,998 (14,607bp)
Chromosome
6
Position
116,533,068 - 116,999,127 (466.1K)
Chromosome
6
Position
78,590,962 - 79,314,766 (0.7M)
Chromosome
6
Position
67,261,248 - 67,716,143 (454.9K)
Chromosome
6
Position
61,361,215 - 61,744,231 (383K)
Chromosome
6
Position
115,438,151 - 116,057,033 (0.6M)
Chromosome
6
Position
102,622,572 - 103,063,477 (440.9K)
Chromosome
6
Position
70,187,886 - 70,585,306 (397.4K)
Chromosome
6
Position
30,361,227 - 30,787,250 (426K)
Chromosome
6
Position
41,707,928 - 43,021,735 (1.3M)
Chromosome
6
Position
35,100,697 - 35,938,394 (0.8M)
Chromosome
6
Position
102,120,750 - 102,616,085 (495.3K)
Chromosome
6
Position
72,512,587 - 72,989,754 (477.2K)
Chromosome
6
Position
106,482,071 - 107,357,273 (0.9M)
Chromosome
6
Position
97,988,420 - 98,501,777 (0.5M)
Chromosome
6
Position
96,810,645 - 97,503,365 (0.7M)
Chromosome
6
Position
88,092,826 - 88,542,010 (449.2K)
Chromosome
6
Position
96,794,834 - 97,503,368 (0.7M)
Chromosome
6
Position
24,101,169 - 24,477,615 (376.4K)
Hits:UniGene
114:Bt.102079
Symbol
LOC789276
Description
Hypothetical LOC789276
Hits:UniGene
46:Bt.102104
Symbol
ARHGAP24
Description
Rho GTPase activating protein 24
Hits:UniGene
4:Bt.102726
Symbol
UniGene:Bt.102726
Description
Transcribed locus, strongly similar to XP_420552.1 PREDICTED: rho GTPase-act...
Hits:UniGene
1:Bt.103997
Symbol
UniGene:Bt.103997
Description
Transcribed locus, strongly similar to NP_055207.1 brain neuron cytoplasmic ...
Hits:UniGene
1:Bt.105114
Symbol
PCDH7
Description
Protocadherin 7
Hits:UniGene
1:Bt.105230
Symbol
UniGene:Bt.105230
Description
Slit homolog 2 (Drosophila)
Hits:UniGene
1:Bt.109462
Symbol
UniGene:Bt.109462
Description
Transcribed locus, weakly similar to XP_002724112.1 PREDICTED: hypothetical ...
Hits:UniGene
1:Bt.111362
Symbol
OTOP1
Description
Otopetrin 1
Hits:UniGene
1:Bt.111488
Symbol
KCTD8
Description
Potassium channel tetramerisation domain containing 8
Hits:UniGene
1:Bt.111717
Symbol
KLF3
Description
Kruppel-like factor 3 (basic)
Hits:UniGene
1:Bt.111878
Symbol
LOC100848478
Description
60S ribosomal protein L7a-like
Hits:UniGene
1:Bt.112161
Symbol
GK2
Description
Glycerol kinase 2
Hits:UniGene
1:Bt.112384
Symbol
NAA11
Description
N(alpha)-acetyltransferase 11, NatA catalytic subunit
Hits:UniGene
1:Bt.112406
Symbol
NKX6-1
Description
NK6 homeobox 1
Hits:UniGene
1:Bt.112407
Symbol
PPEF2
Description
Protein phosphatase, EF-hand calcium binding domain 2
Hits:UniGene
1:Bt.112450
Symbol
LRIT3
Description
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
Hits:UniGene
79:Bt.11446
Symbol
LDB2
Description
LIM domain binding 2
Hits:UniGene
30:Bt.13181
Symbol
LPHN3
Description
Latrophilin 3
Hits:UniGene
6:Bt.173
Symbol
GABRB1
Description
Gamma-aminobutyric acid (GABA) A receptor, beta 1
Hits:UniGene
46:Bt.24324
Symbol
APBB2
Description
Amyloid beta (A4) precursor protein-binding, family B, member 2
Hits:UniGene
28:Bt.24569
Symbol
CC2D2A
Description
Coiled-coil and C2 domain containing 2A
Hits:UniGene
41:Bt.26656
Symbol
MAPK10
Description
Mitogen-activated protein kinase 10
Hits:UniGene
50:Bt.27398
Symbol
SCFD2
Description
Sec1 family domain containing 2
Hits:UniGene
30:Bt.36167
Symbol
UNC5C
Description
Unc-5 homolog C (C. elegans)
Hits:UniGene
16:Bt.46431
Symbol
KCNIP4
Description
Kv channel interacting protein 4
Hits:UniGene
6:Bt.60938
Symbol
LOC616908
Description
Family with sequence similarity 190, member A
Hits:UniGene
7:Bt.64743
Symbol
UniGene:Bt.64743
Description
Transcribed locus, strongly similar to NP_083546.2 rho GTPase-activating pro...
Hits:UniGene
57:Bt.66162
Symbol
EXOC1
Description
Exocyst complex component 1
Hits:UniGene
27:Bt.67878
Symbol
NSG1
Description
Neuron specific gene family member 1
Hits:UniGene
56:Bt.6800
Symbol
RASGEF1B
Description
RasGEF domain family, member 1B
Hits:UniGene
1:Bt.68103
Symbol
UniGene:Bt.68103
Description
Transcribed locus, strongly similar to NP_001069857.1 hypothetical protein L...
Hits:UniGene
16:Bt.7156
Symbol
SLC4A4
Description
Solute carrier family 4, sodium bicarbonate cotransporter, member 4
Hits:UniGene
8:Bt.89255
Symbol
C6H4orf22
Description
Chromosome 4 open reading frame 22 ortholog
Hits:UniGene
9:Bt.92543
Symbol
BANK1
Description
B-cell scaffold protein with ankyrin repeats 1

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