NCBI
Human genome overview page (Annotation Release 106)
Human genome overview page (Annotation Release 105)
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Region Shown:

Homo sapiens (human)  Annotation Release 106 (Current)BLAST human sequences
Chromosome: 1 2 3 4 5 6 7 8 9 10 11 12 [ 13 ] 14 15 16 17 18 19 20 21 22 X Y MT
Query: ATXN8OS    [clear]
 Master Map: Phenotype (includes QTLs) Summary of Maps mapsnoptions.gif 
Region Displayed: 68,980K-71,270K bp   Download/View Sequence/Evidence

Summary of Maps:
Map 1: VariationTable View
Region Displayed: 68,980K-71,270K bp   Download/View Sequence/Evidence
Total Variations On Chromosome: 2020009
Variations Labeled: 30 Total Variations in Region: 30
Map 2: Genes On SequenceTable View
Region Displayed: 68,980K-71,270K bp   Download/View Sequence/Evidence
Total Genes On Chromosome: 993
Genes Labeled: 11 Total Genes in Region: 11
Map 3: Phenotype (includes QTLs)Table View
Region Displayed: 68,980K-71,270K bp   Download/View Sequence/Evidence
Total Phenotypes On Chromosome: 70
Phenotypes Labeled: 1 Total Phenotypes in Region: 1
GeneATXN8OS
Aliases
KLHL1AS, ATXN8OS, NCRNA00003, SCA8
GeneKLHL1
OTTHUMP00000018492
hCG_1812180
Mayven-related protein 2|OTTHUMP00000018492|kelch-like protein 1
Mayven-related protein 2|kelch-like protein 1
Kelch-like protein 1
Kelch-like protein 1|Mayven-related protein 2|kelch-like 1 protein
Mayven-related protein 2
Kelch-like protein 1|Mayven-related protein 2|kelch-like protein 1
kelch-like protein 1
kelch-like 1 protein
Aliases
KIAA1490, KLHL1, FLJ30047, MRP2
GeneZDHHC20P4
Aliases
ZDHHC20P4, LOC730239
GeneSRSF1P1
Aliases
SRSF1P1, LOC100128625
GeneMTCL1P1
Aliases
CCDC165P1, SOGA2P1, MTCL1P1
GeneLUC7L3P1
Aliases
LUC7L3P1
GeneNT5CP3
Aliases
NT5CP3
GenePSMC1P13
Aliases
PSMC1P13
SNPrs2184881
SNPrs5804466
SNPrs7317505
SNPrs12430177
SNPrs35022681
SNPrs56670245
SNPrs56940937
SNPrs60638539
SNPrs61042378
SNPrs76314728
SNPrs77817742
SNPrs113877093
SNPrs115306382
SNPrs116064365
SNPrs116802383
SNPrs138546055
SNPrs138697075
SNPrs142483218
SNPrs146973437
SNPrs148831432
SNPrs180806576
SNPrs181245556
SNPrs181709569
SNPrs185065577
SNPrs190251564
SNPrs190437575
SNPrs192200588
GeneRNY3P10
Aliases
RNY3P10
GeneSNRPFP3
Aliases
SNRPFP3
GeneLINC00348
Aliases
RP11-77P3.1, LINC00348
SNPrs369117449
SNPrs369245729
SNPrs397696575
Chromosome
13
Position
68,984,943 - 68,986,326 (1,384bp)
Orientation
+
Chromosome
13
Position
69,101,832 - 69,102,056 (225bp)
Orientation
-
Chromosome
13
Position
69,408,130 - 69,408,735 (606bp)
Orientation
-
Chromosome
13
Position
69,700,593 - 70,108,493 (407.9K)
Orientation
-
Chromosome
13
Position
69,802,940 - 69,803,041 (102bp)
Orientation
+
Chromosome
13
Position
69,893,856 - 69,895,391 (1,536bp)
Orientation
-
Chromosome
13
Position
69,912,864 - 69,913,384 (521bp)
Orientation
-
Chromosome
13
Position
70,090,939 - 70,091,883 (945bp)
Orientation
-
Chromosome
13
Position
70,107,213 - 70,139,753 (32,541bp)
Orientation
+
Chromosome
13
Position
70,923,659 - 70,925,610 (1,952bp)
Orientation
+
Chromosome
13
Position
71,143,183 - 71,168,417 (25,235bp)
Orientation
+
Chromosome
13
Position
70,179,409 - 70,179,409 (1bp)
Chromosome
13
Position
70,683,001 - 70,683,001 (1bp)
Chromosome
13
Position
69,617,792 - 69,617,792 (1bp)
Chromosome
13
Position
69,514,658 - 69,514,658 (1bp)
Chromosome
13
Position
69,994,206 - 69,994,206 (1bp)
Chromosome
13
Position
69,296,970 - 69,296,970 (1bp)
Chromosome
13
Position
69,019,923 - 69,019,923 (1bp)
Chromosome
13
Position
69,853,443 - 69,853,443 (1bp)
Chromosome
13
Position
71,215,342 - 71,215,342 (1bp)
Chromosome
13
Position
69,838,479 - 69,838,479 (1bp)
Chromosome
13
Position
70,166,627 - 70,166,627 (1bp)
Chromosome
13
Position
70,563,356 - 70,563,356 (1bp)
Chromosome
13
Position
70,810,630 - 70,810,630 (1bp)
Chromosome
13
Position
69,669,039 - 69,669,039 (1bp)
Chromosome
13
Position
70,849,190 - 70,849,190 (1bp)
Chromosome
13
Position
71,192,655 - 71,192,655 (1bp)
Chromosome
13
Position
70,061,557 - 70,061,557 (1bp)
Chromosome
13
Position
69,599,768 - 69,599,768 (1bp)
Chromosome
13
Position
71,009,058 - 71,009,058 (1bp)
Chromosome
13
Position
70,157,022 - 70,157,023 (2bp)
Chromosome
13
Position
70,472,638 - 70,472,638 (1bp)
Chromosome
13
Position
70,978,065 - 70,978,065 (1bp)
Chromosome
13
Position
70,159,142 - 70,159,142 (1bp)
Chromosome
13
Position
70,698,244 - 70,698,245 (2bp)
Chromosome
13
Position
70,031,125 - 70,031,125 (1bp)
Chromosome
13
Position
71,127,270 - 71,127,270 (1bp)
Chromosome
13
Position
70,895,609 - 70,895,609 (1bp)
Chromosome
13
Position
70,802,488 - 70,802,488 (1bp)
Chromosome
13
Position
70,108,258 - 70,108,258 (1bp)
Chromosome
13
Position
69,915,591 - 69,915,591 (1bp)
Symbol
ZDHHC20P4
Evidence code
best RefSeq
Cytogenetic coordinates
13q21.33
Description
zinc finger, DHHC-type containing 20 pseudogene 4
Symbol
SNRPFP3
Evidence code
best RefSeq
Cytogenetic coordinates
 
Description
small nuclear ribonucleoprotein polypeptide F pseudogene 3
Symbol
SRSF1P1
Evidence code
best RefSeq
Cytogenetic coordinates
13q21.33
Description
serine/arginine-rich splicing factor 1 pseudogene 1
Symbol
KLHL1
Evidence code
best RefSeq
Cytogenetic coordinates
13q21
Description
kelch-like family member 1
Symbol
RNY3P10
Evidence code
best RefSeq
Cytogenetic coordinates
 
Description
RNA, Ro-associated Y3 pseudogene 10
Symbol
PSMC1P13
Evidence code
best RefSeq
Cytogenetic coordinates
 
Description
proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13
Symbol
NT5CP3
Evidence code
best RefSeq
Cytogenetic coordinates
 
Description
5',3'-nucleotidase, cytosolic pseudogene 3
Symbol
LUC7L3P1
Evidence code
best RefSeq
Cytogenetic coordinates
 
Description
LUC7-like 3 (S. cerevisiae) pseudogene 1
Symbol
ATXN8OS
Evidence code
best RefSeq
Cytogenetic coordinates
13q21
Description
ATXN8 opposite strand (non-protein coding)
Symbol
MTCL1P1
Evidence code
best RefSeq
Cytogenetic coordinates
13q21.33
Description
MTCL1 pseudogene 1
Symbol
LINC00348
Evidence code
best RefSeq
Cytogenetic coordinates
13q21.33
Description
long intergenic non-protein coding RNA 348
refSNP ID: rs190251564
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.02)
Validated
No genotypes available
No submitter links
refSNP ID: rs192200588
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.02)
Validated
No genotypes available
No submitter links
refSNP ID: rs113877093
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.03)
Validated
Genotypes available: link
Submitter links available
refSNP ID: rs61042378
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het unknown
Success rate is undefined
No genotypes available
No submitter links
refSNP ID: rs369245729
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: KLHL1;57626;intron
Not in known transcript
Not in known coding region
Het unknown
Success rate is undefined
No genotypes available
No submitter links
refSNP ID: rs138697075
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.04)
Validated
No genotypes available
No submitter links
refSNP ID: rs115306382
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.02(0.10)
Validated
No genotypes available
No submitter links
refSNP ID: rs60638539
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: KLHL1;57626;intron
Not in known transcript
Not in known coding region
Het(S.E.)=0.08(0.19)
Validated
Genotypes available: link
Submitter links available
refSNP ID: rs76314728
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het unknown
Validated
No genotypes available
No submitter links
refSNP ID: rs7317505
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: KLHL1;57626;intron
Not in known transcript
Not in known coding region
Het(S.E.)=0.12(0.21)
Validated
Genotypes available: link
Submitter links available
refSNP ID: rs12430177
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.27(0.25)
Validated
Genotypes available: link
No submitter links
refSNP ID: rs185065577
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.01(0.05)
Validated
No genotypes available
No submitter links
refSNP ID: rs77817742
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.06(0.16)
Validated
Genotypes available: link
Submitter links available
refSNP ID: rs2184881
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.15(0.23)
Validated
Genotypes available: link
Submitter links available
refSNP ID: rs190437575
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.03)
Validated
No genotypes available
No submitter links
refSNP ID: rs180806576
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.02)
Validated
No genotypes available
No submitter links
refSNP ID: rs146973437
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: KLHL1;57626;intron
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.03)
Validated
No genotypes available
No submitter links
refSNP ID: rs138546055
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.00(0.04)
Validated
No genotypes available
No submitter links
refSNP ID: rs56670245
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.07(0.17)
Validated
No genotypes available
No submitter links
refSNP ID: rs35022681
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het unknown
Success rate is undefined
No genotypes available
No submitter links
refSNP ID: rs369117449
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het unknown
Success rate is undefined
No genotypes available
No submitter links
refSNP ID: rs181245556
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.01(0.06)
Validated
No genotypes available
No submitter links
refSNP ID: rs116064365
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.03(0.13)
Validated
No genotypes available
No submitter links
refSNP ID: rs397696575
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het unknown
Success rate is undefined
No genotypes available
No submitter links
refSNP ID: rs5804466
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: KLHL1;57626;intron
Not in known transcript
Not in known coding region
Het(S.E.)=0.46(0.14)
Validated
No genotypes available
No submitter links
refSNP ID: rs148831432
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.01(0.07)
Validated
No genotypes available
No submitter links
refSNP ID: rs142483218
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.01(0.05)
Validated
No genotypes available
No submitter links
refSNP ID: rs116802383
Map Counts: CH: 1, NT: 1, TOT: 1
Not in known locus
Not in known transcript
Not in known coding region
Het(S.E.)=0.02(0.10)
Validated
No genotypes available
No submitter links
refSNP ID: rs56940937
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: ATXN8OS;6315;intron;KLHL1;57626;UTR-5
Transcript regions: NM_001286725;UTR;NM_020866;UTR
Not in known coding region
Het(S.E.)=0.07(0.17)
Validated
No genotypes available
No submitter links
refSNP ID: rs181709569
Map Counts: CH: 1, NT: 1, TOT: 1
Locus regions: KLHL1;57626;intron
Not in known transcript
Not in known coding region
Het(S.E.)=0.01(0.08)
Validated
No genotypes available
No submitter links

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