NCBI
Rat genome overview page (Annotation Release 105)
Rat genome overview page (Annotation Release 104)
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Region Shown:

Rattus norvegicus (rat)  Annotation Release 105 (Current)BLAST rat sequences
Chromosome: [ 1 ] 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 X Y MT
 Master Map: Genes On Sequence Summary of Maps mapsnoptions.gif 
Region Displayed: 0-280M bp   Download/View Sequence/Evidence

Summary of Maps:
Map 1: ContigTable View
Region Displayed: 0-280M bp   Download/View Sequence/Evidence
Total Contigs On Chromosome: 58 [29 not localized]
Contigs Labeled: 34 Total Contigs in Region: 58
Map 2: Rattus norvegicus UniGene ClustersTable View
Region Displayed: 0-280M bp   Download/View Sequence/Evidence
Total Transcript alignments On Chromosome: 8348 [10 not localized]
UniGene Clusters Labeled: 34 Total Transcript alignments in Region: 8348
Histogram Data: Tick Width=570,087bp/pixel, Max Height=3650 transcripts (logarithmic scale)
Map 3: Genes On SequenceTable View
Region Displayed: 0-280M bp   Download/View Sequence/Evidence
Total Genes On Chromosome: 4753 [13 not localized]
Genes Labeled: 20 Total Genes in Region: 4753
UniGeneRn.10695
UniGeneRn.12345
UniGeneRn.202966
UniGeneRn.204724
UniGeneRn.207194
UniGeneRn.221883
UniGeneRn.228166
UniGeneRn.228170
UniGeneRn.228174
UniGeneRn.228185
UniGeneRn.228197
UniGeneRn.228198
UniGeneRn.228199
UniGeneRn.228205
UniGeneRn.228220
UniGeneRn.228291
UniGeneRn.228294
UniGeneRn.228418
UniGeneRn.228525
UniGeneRn.228528
UniGeneRn.228533
UniGeneRn.228720
UniGeneRn.229406
UniGeneRn.229523
UniGeneRn.230764
UniGeneRn.231073
UniGeneRn.231172
UniGeneRn.231235
UniGeneRn.231255
UniGeneRn.231273
UniGeneRn.231284
SequenceNW_007905681.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905680.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905679.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905676.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905675.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905674.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905673.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905670.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905669.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905668.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905667.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905666.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905663.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905660.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905659.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905658.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905654.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905652.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905651.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905650.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905645.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905644.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905643.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905642.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905640.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905639.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905638.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905636.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905635.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905634.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905633.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905626.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905625.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
SequenceNW_007905624.1
Rattus norvegicus strain mixed chromosome 1 genomic scaffold, Rnor_6.0
Chromosome
1
Position
281,650,103 - 282,763,074 (1.1M)
Orientation
+
Chromosome
1
Position
271,456,133 - 281,640,102 (10.2M)
Orientation
+
Chromosome
1
Position
258,641,265 - 271,446,132 (12.8M)
Orientation
+
Chromosome
1
Position
253,927,777 - 258,385,192 (4.5M)
Orientation
+
Chromosome
1
Position
244,539,856 - 253,917,776 (9.4M)
Orientation
+
Chromosome
1
Position
240,551,604 - 244,529,855 (4M)
Orientation
+
Chromosome
1
Position
237,991,905 - 240,541,603 (2.5M)
Orientation
+
Chromosome
1
Position
229,369,729 - 237,071,634 (7.7M)
Orientation
+
Chromosome
1
Position
227,214,510 - 229,359,728 (2.1M)
Orientation
+
Chromosome
1
Position
222,992,850 - 227,204,509 (4.2M)
Orientation
+
Chromosome
1
Position
215,322,533 - 222,982,849 (7.7M)
Orientation
+
Chromosome
1
Position
206,638,766 - 215,312,532 (8.7M)
Orientation
+
Chromosome
1
Position
194,689,964 - 206,481,092 (11.8M)
Orientation
+
Chromosome
1
Position
160,980,933 - 194,589,536 (33.6M)
Orientation
+
Chromosome
1
Position
154,881,068 - 160,970,932 (6.1M)
Orientation
+
Chromosome
1
Position
148,879,550 - 154,871,067 (6M)
Orientation
+
Chromosome
1
Position
145,116,531 - 148,675,944 (3.6M)
Orientation
+
Chromosome
1
Position
121,590,658 - 145,011,851 (23.4M)
Orientation
+
Chromosome
1
Position
120,010,090 - 121,580,657 (1.6M)
Orientation
+
Chromosome
1
Position
117,203,290 - 120,000,089 (2.8M)
Orientation
+
Chromosome
1
Position
95,391,077 - 116,902,987 (21.5M)
Orientation
+
Chromosome
1
Position
83,100,783 - 95,381,076 (12.3M)
Orientation
+
Chromosome
1
Position
68,723,022 - 83,090,782 (14.4M)
Orientation
+
Chromosome
1
Position
67,705,983 - 68,713,021 (1M)
Orientation
+
Chromosome
1
Position
50,946,648 - 67,588,084 (16.6M)
Orientation
+
Chromosome
1
Position
42,352,458 - 50,936,647 (8.6M)
Orientation
+
Chromosome
1
Position
38,260,665 - 42,342,457 (4.1M)
Orientation
+
Chromosome
1
Position
31,254,202 - 38,240,153 (7M)
Orientation
+
Chromosome
1
Position
27,222,078 - 31,244,201 (4M)
Orientation
+
Chromosome
1
Position
25,199,816 - 27,212,077 (2M)
Orientation
+
Chromosome
1
Position
638,405 - 25,189,815 (24.6M)
Orientation
+
Chromosome
1
Position
97,112 - 98,687 (1,576bp)
Orientation
+
Chromosome
1
Position
23,317 - 87,111 (63,795bp)
Orientation
+
Chromosome
1
Position
1 - 13,316 (13,316bp)
Orientation
+
Chromosome
1
Position
105,349,047 - 106,218,970 (0.9M)
Chromosome
1
Position
189,457,529 - 190,370,528 (0.9M)
Chromosome
1
Position
155,147,804 - 157,269,747 (2.1M)
Chromosome
1
Position
248,981,436 - 250,300,952 (1.3M)
Chromosome
1
Position
48,879,693 - 50,070,020 (1.2M)
Chromosome
1
Position
262,023,397 - 263,134,871 (1.1M)
Chromosome
1
Position
217,651,540 - 217,652,818 (1,279bp)
Chromosome
1
Position
205,778,427 - 205,779,887 (1,461bp)
Chromosome
1
Position
257,076,221 - 257,082,655 (6,435bp)
Chromosome
1
Position
81,208,274 - 81,213,331 (5,058bp)
Chromosome
1
Position
266,929,299 - 266,934,303 (5,005bp)
Chromosome
1
Position
247,525,151 - 247,536,928 (11,778bp)
Chromosome
1
Position
82,964,683 - 82,987,253 (22,571bp)
Chromosome
1
Position
260,348,905 - 260,460,791 (111.9K)
Chromosome
1
Position
188,195,479 - 188,245,546 (50,068bp)
Chromosome
1
Position
190,072,420 - 190,178,813 (106.4K)
Chromosome
1
Position
8,883,961 - 8,885,967 (2,007bp)
Chromosome
1
Position
225,004,462 - 225,004,799 (338bp)
Chromosome
1
Position
225,095,879 - 225,096,393 (515bp)
Chromosome
1
Position
164,225,885 - 164,226,644 (760bp)
Chromosome
1
Position
164,291,617 - 164,292,094 (478bp)
Chromosome
1
Position
48,521,828 - 48,527,834 (6,007bp)
Chromosome
1
Position
221,155,807 - 221,156,125 (319bp)
Chromosome
1
Position
134,886,563 - 134,887,410 (848bp)
Chromosome
1
Position
226,113,239 - 226,113,460 (222bp)
Chromosome
1
Position
231,432,970 - 231,433,768 (799bp)
Chromosome
1
Position
231,437,762 - 231,438,589 (828bp)
Chromosome
1
Position
165,640,750 - 165,642,198 (1,449bp)
Chromosome
1
Position
274,674,847 - 274,675,581 (735bp)
Chromosome
1
Position
166,374,900 - 166,375,526 (627bp)
Chromosome
1
Position
166,379,643 - 166,380,345 (703bp)
Chromosome
1
Position
276,659,254 - 276,660,008 (755bp)
Chromosome
1
Position
8,861,495 - 8,862,189 (695bp)
Chromosome
1
Position
94,372,861 - 94,373,599 (739bp)
Hits:UniGene
21:Rn.10695
Symbol
Nell1
Description
NEL-like 1 (chicken)
Hits:UniGene
60:Rn.12345
Symbol
Thumpd1
Description
THUMP domain containing 1
Hits:UniGene
14:Rn.202966
Symbol
Dlg2
Description
Discs, large homolog 2 (Drosophila)
Hits:UniGene
5:Rn.204724
Symbol
Prkg1
Description
Protein kinase, cGMP-dependent, type 1
Hits:UniGene
23:Rn.207194
Symbol
Park2
Description
Parkinson disease (autosomal recessive, juvenile) 2, parkin
Hits:UniGene
1:Rn.221883
Symbol
Hpse2
Description
Heparanase 2
Hits:UniGene
1:Rn.228166
Symbol
UniGene:Rn.228166
Description
TL0AEA64YA18 mRNA sequence
Hits:UniGene
1:Rn.228170
Symbol
UniGene:Rn.228170
Description
TL0AEA64YC03 mRNA sequence
Hits:UniGene
1:Rn.228174
Symbol
Tmem20
Description
Solute carrier family 35, member G1
Hits:UniGene
1:Rn.228185
Symbol
Lypd5
Description
Ly6/Plaur domain containing 5
Hits:UniGene
1:Rn.228197
Symbol
Calhm3
Description
Calcium homeostasis modulator 3
Hits:UniGene
1:Rn.228198
Symbol
Cd274
Description
CD274 molecule
Hits:UniGene
1:Rn.228199
Symbol
Cd177
Description
CD177 molecule
Hits:UniGene
1:Rn.228205
Symbol
Tll2
Description
Tolloid-like 2
Hits:UniGene
1:Rn.228220
Symbol
Tmc7
Description
Transmembrane channel-like 7
Hits:UniGene
1:Rn.228291
Symbol
Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15
Hits:UniGene
1:Rn.228294
Symbol
Gje1
Description
Gap junction protein, epsilon 1
Hits:UniGene
1:Rn.228418
Symbol
Ttc9c
Description
Tetratricopeptide repeat domain 9C
Hits:UniGene
2:Rn.228525
Symbol
UniGene:Rn.228525
Description
Transcribed locus, moderately similar to NP_085131.1 INTS5 gene product [Hom...
Hits:UniGene
5:Rn.228528
Symbol
UniGene:Rn.228528
Description
Transcribed locus, strongly similar to NP_058900.1 Map6 gene product [Rattus...
Hits:UniGene
2:Rn.228528
Symbol
UniGene:Rn.228528
Description
Transcribed locus, strongly similar to NP_058900.1 Map6 gene product [Rattus...
Hits:UniGene
6:Rn.228533
Symbol
UniGene:Rn.228533
Description
Transcribed locus, moderately similar to XP_001144892.1 PREDICTED: similar t...
Hits:UniGene
1:Rn.228720
Symbol
UniGene:Rn.228720
Description
CDNA clone IMAGE:7321089
Hits:UniGene
14:Rn.229406
Symbol
UniGene:Rn.229406
Description
TL0AEA63YP22 mRNA sequence
Hits:UniGene
1:Rn.229523
Symbol
UniGene:Rn.229523
Description
TL0ABA14YP10 mRNA sequence
Hits:UniGene
46:Rn.230764
Symbol
UniGene:Rn.230764
Description
TL0AEA1YK18 mRNA sequence
Hits:UniGene
2:Rn.230764
Symbol
UniGene:Rn.230764
Description
TL0AEA1YK18 mRNA sequence
Hits:UniGene
3:Rn.231073
Symbol
UniGene:Rn.231073
Description
TL0AEA68YB17 mRNA sequence
Hits:UniGene
2:Rn.231172
Symbol
UniGene:Rn.231172
Description
TL0AEA58YN06 mRNA sequence
Hits:UniGene
1:Rn.231235
Symbol
UniGene:Rn.231235
Description
TL0AEA8YE13 mRNA sequence
Hits:UniGene
2:Rn.231235
Symbol
UniGene:Rn.231235
Description
TL0AEA8YE13 mRNA sequence
Hits:UniGene
1:Rn.231255
Symbol
UniGene:Rn.231255
Description
TL0ABA17YL09 mRNA sequence
Hits:UniGene
1:Rn.231273
Symbol
UniGene:Rn.231273
Description
TL0AEA59YB06 mRNA sequence
Hits:UniGene
1:Rn.231284
Symbol
UniGene:Rn.231284
Description
TL0AEA56YF13 mRNA sequence

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