|
Status |
Public on Jun 07, 2012 |
Title |
UW_ChipSeq_H7-hESC_H3K36me3 |
Sample type |
SRA |
|
|
Source name |
H7-hESC
|
Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: H7-hESC cell organism: human cell description: undifferentiated embryonic stem cells cell lineage: inner cell mass cell sex: U antibody: H3K36me3 antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3 antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts. antibody vendorname: Abcam antibody vendorid: ab9050 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: wgEncodeEH000926 labexpid: DS14115 labversion: Bowtie 0.12.5 replicate: 1
|
Biomaterial provider |
WiCell
|
Treatment protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
|
|
Submission date |
Jun 07, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE35583 |
Histone Modifications by ChIP-seq from ENCODE/University of Washington |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX189967 |
BioSample |
SAMN01731446 |
Named Annotation |
GSM945184_hg19_wgEncodeUwHistoneH7esH3k36me3StdRawRep1.bigWig |
Named Annotation |
GSM945184_hg19_wgEncodeUwHistoneH7esH3k36me3StdRawRep2.bigWig |