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Status
Public on Oct 27, 2005
Title
HA99-96B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
25
A
0.440646
AFFX-MurIL10_at
7.3
A
0.659339
AFFX-MurIL4_at
2.3
A
0.957038
AFFX-MurFAS_at
20.3
A
0.287743
AFFX-BioB-5_at
464.8
P
0.001102
AFFX-BioB-M_at
1192.7
P
0.000081
AFFX-BioB-3_at
472.3
P
0.000095
AFFX-BioC-5_at
1148.5
P
0.00011
AFFX-BioC-3_at
962.9
P
0.00006
AFFX-BioDn-5_at
1275.9
P
0.000044
AFFX-BioDn-3_at
7035.1
P
0.00007
AFFX-CreX-5_at
13479.8
P
0.000044
AFFX-CreX-3_at
16976.7
P
0.000044
AFFX-BioB-5_st
49.4
A
0.227636
AFFX-BioB-M_st
20.5
A
0.631562
AFFX-BioB-3_st
18
A
0.794268
AFFX-BioC-5_st
6.8
A
0.883887
AFFX-BioC-3_st
5.1
A
0.52976
AFFX-BioDn-5_st
135.7
A
0.095667
AFFX-BioDn-3_st
149.9
P
0.01667
12625 311 Kbytes .Supplementary data files not provided
