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Status
Public on Oct 27, 2005
Title
HA99-96A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
39.3
A
0.440646
AFFX-MurIL10_at
9.7
A
0.737173
AFFX-MurIL4_at
1.7
A
0.978098
AFFX-MurFAS_at
21.5
A
0.340661
AFFX-BioB-5_at
357.4
P
0.006871
AFFX-BioB-M_at
869
P
0.00039
AFFX-BioB-3_at
337.2
P
0.000169
AFFX-BioC-5_at
965.6
P
0.000127
AFFX-BioC-3_at
633.4
P
0.000052
AFFX-BioDn-5_at
759.1
P
0.00007
AFFX-BioDn-3_at
4472.1
P
0.00006
AFFX-CreX-5_at
7994.5
P
0.000044
AFFX-CreX-3_at
10334.7
P
0.000044
AFFX-BioB-5_st
46.3
A
0.156732
AFFX-BioB-M_st
24.1
A
0.712257
AFFX-BioB-3_st
30.7
A
0.699394
AFFX-BioC-5_st
12.3
A
0.852061
AFFX-BioC-3_st
21.3
A
0.470241
AFFX-BioDn-5_st
135.7
A
0.131361
AFFX-BioDn-3_st
152.3
M
0.042962
12625 311 Kbytes .Supplementary data files not provided
