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Status
Public on Oct 27, 2005
Title
HA01-149B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
17.7
A
0.672921
AFFX-MurIL10_at
10
A
0.686277
AFFX-MurIL4_at
4.6
A
0.876428
AFFX-MurFAS_at
4.9
A
0.749204
AFFX-BioB-5_at
370.7
P
0.002023
AFFX-BioB-M_at
976.9
P
0.000195
AFFX-BioB-3_at
482.9
P
0.001246
AFFX-BioC-5_at
1169.8
P
0.00011
AFFX-BioC-3_at
941.5
P
0.000044
AFFX-BioDn-5_at
1070.9
P
0.00006
AFFX-BioDn-3_at
6452.7
P
0.000044
AFFX-CreX-5_at
11525.8
P
0.000044
AFFX-CreX-3_at
14955.6
P
0.000044
AFFX-BioB-5_st
88.7
A
0.165861
AFFX-BioB-M_st
85.3
A
0.368438
AFFX-BioB-3_st
23.2
A
0.724854
AFFX-BioC-5_st
12.3
A
0.945787
AFFX-BioC-3_st
48.7
A
0.327079
AFFX-BioDn-5_st
189.4
A
0.108979
AFFX-BioDn-3_st
193.4
P
0.028457
12625 311 Kbytes .Supplementary data files not provided
