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Status
Public on Oct 27, 2005
Title
HA01-149A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
22.8
A
0.686277
AFFX-MurIL10_at
4.7
A
0.824672
AFFX-MurIL4_at
3.1
A
0.986189
AFFX-MurFAS_at
31
A
0.39692
AFFX-BioB-5_at
579.9
P
0.004484
AFFX-BioB-M_at
1270.5
P
0.000258
AFFX-BioB-3_at
559.4
P
0.000972
AFFX-BioC-5_at
1474.9
P
0.000127
AFFX-BioC-3_at
1176.2
P
0.000052
AFFX-BioDn-5_at
1236.3
P
0.00006
AFFX-BioDn-3_at
7762.5
P
0.00006
AFFX-CreX-5_at
12284.8
P
0.000044
AFFX-CreX-3_at
13876.7
P
0.000044
AFFX-BioB-5_st
54
A
0.275146
AFFX-BioB-M_st
34
A
0.772364
AFFX-BioB-3_st
26.5
A
0.814869
AFFX-BioC-5_st
12.6
A
0.876428
AFFX-BioC-3_st
27.5
A
0.631562
AFFX-BioDn-5_st
176
A
0.147939
AFFX-BioDn-3_st
233.9
M
0.058444
12625 311 Kbytes .Supplementary data files not provided
