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Status
Public on Oct 27, 2005
Title
HA01-57A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
10.8
A
0.52976
AFFX-MurIL10_at
6
A
0.824672
AFFX-MurIL4_at
2.5
A
0.953518
AFFX-MurFAS_at
10.8
A
0.425962
AFFX-BioB-5_at
412.9
P
0.000662
AFFX-BioB-M_at
950.8
P
0.000081
AFFX-BioB-3_at
439.9
P
0.000225
AFFX-BioC-5_at
926
P
0.000081
AFFX-BioC-3_at
719.4
P
0.00006
AFFX-BioDn-5_at
1284.8
P
0.000052
AFFX-BioDn-3_at
4911.9
P
0.000044
AFFX-CreX-5_at
10892.6
P
0.000044
AFFX-CreX-3_at
14063.1
P
0.000044
AFFX-BioB-5_st
14.8
A
0.382599
AFFX-BioB-M_st
42.5
A
0.544587
AFFX-BioB-3_st
14.7
A
0.699394
AFFX-BioC-5_st
8.3
A
0.937071
AFFX-BioC-3_st
25.5
A
0.327079
AFFX-BioDn-5_st
86.7
A
0.216524
AFFX-BioDn-3_st
98.3
P
0.013811
12625 311 Kbytes .Supplementary data files not provided
