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Status
Public on Oct 27, 2005
Title
HA00-13B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
28.5
A
0.574038
AFFX-MurIL10_at
10.1
A
0.645547
AFFX-MurIL4_at
2
A
0.868639
AFFX-MurFAS_at
9.7
A
0.41138
AFFX-BioB-5_at
608.9
P
0.001593
AFFX-BioB-M_at
1408.6
P
0.000052
AFFX-BioB-3_at
627.1
P
0.000044
AFFX-BioC-5_at
1528.4
P
0.000095
AFFX-BioC-3_at
1249.9
P
0.000052
AFFX-BioDn-5_at
2023.7
P
0.000044
AFFX-BioDn-3_at
8912.2
P
0.000052
AFFX-CreX-5_at
17430.1
P
0.000044
AFFX-CreX-3_at
20179.5
P
0.000044
AFFX-BioB-5_st
51
A
0.250796
AFFX-BioB-M_st
45.2
A
0.58862
AFFX-BioB-3_st
29.6
A
0.659339
AFFX-BioC-5_st
8.1
A
0.910522
AFFX-BioC-3_st
35.2
A
0.455413
AFFX-BioDn-5_st
160.2
A
0.067678
AFFX-BioDn-3_st
210.8
P
0.011384
12625 311 Kbytes .Supplementary data files not provided
