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Status
Public on Oct 27, 2005
Title
HA00-13A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
40.5
A
0.5
AFFX-MurIL10_at
7.6
A
0.686277
AFFX-MurIL4_at
14.2
A
0.60308
AFFX-MurFAS_at
19.7
A
0.39692
AFFX-BioB-5_at
605.2
P
0.001102
AFFX-BioB-M_at
1521.1
P
0.000044
AFFX-BioB-3_at
610.7
P
0.000169
AFFX-BioC-5_at
1543.3
P
0.00011
AFFX-BioC-3_at
1131.6
P
0.000052
AFFX-BioDn-5_at
2075.1
P
0.000052
AFFX-BioDn-3_at
8657.4
P
0.000081
AFFX-CreX-5_at
17217.8
P
0.000044
AFFX-CreX-3_at
18878.1
P
0.000044
AFFX-BioB-5_st
55.2
A
0.262827
AFFX-BioB-M_st
81.6
A
0.470241
AFFX-BioB-3_st
21.5
A
0.737173
AFFX-BioC-5_st
11.6
A
0.852061
AFFX-BioC-3_st
22.3
A
0.425962
AFFX-BioDn-5_st
87.1
A
0.275146
AFFX-BioDn-3_st
175.4
M
0.046482
12625 311 Kbytes .Supplementary data files not provided
