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Status
Public on Oct 27, 2005
Title
CA01-103B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE-control patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
25.1
A
0.544587
AFFX-MurIL10_at
4.9
A
0.794268
AFFX-MurIL4_at
2.2
A
0.957038
AFFX-MurFAS_at
33.4
A
0.165861
AFFX-BioB-5_at
435
P
0.00141
AFFX-BioB-M_at
1234.9
P
0.000081
AFFX-BioB-3_at
425.3
P
0.000095
AFFX-BioC-5_at
1006.6
P
0.000095
AFFX-BioC-3_at
913.1
P
0.000052
AFFX-BioDn-5_at
1187.3
P
0.000052
AFFX-BioDn-3_at
5873.1
P
0.000044
AFFX-CreX-5_at
11345.8
P
0.000044
AFFX-CreX-3_at
14233
P
0.000044
AFFX-BioB-5_st
59.1
A
0.175328
AFFX-BioB-M_st
30
A
0.672921
AFFX-BioB-3_st
19.8
A
0.749204
AFFX-BioC-5_st
4.5
A
0.932322
AFFX-BioC-3_st
44.1
A
0.354453
AFFX-BioDn-5_st
100.6
A
0.227636
AFFX-BioDn-3_st
155.9
M
0.042962
12625 311 Kbytes .Supplementary data files not provided
