GEO help: Mouse over screen elements for information.
Status
Public on Oct 27, 2005
Title
CA01-103A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE-control patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 24, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
49.3
A
0.617401
AFFX-MurIL10_at
14.8
A
0.712257
AFFX-MurIL4_at
8.2
A
0.686277
AFFX-MurFAS_at
23.8
A
0.39692
AFFX-BioB-5_at
338.2
P
0.010317
AFFX-BioB-M_at
590
P
0.000509
AFFX-BioB-3_at
357.5
P
0.002023
AFFX-BioC-5_at
869.8
P
0.000195
AFFX-BioC-3_at
554.7
P
0.000147
AFFX-BioDn-5_at
507.7
P
0.00011
AFFX-BioDn-3_at
4323.9
P
0.00006
AFFX-CreX-5_at
7041.8
P
0.000044
AFFX-CreX-3_at
8429.4
P
0.000044
AFFX-BioB-5_st
71.5
A
0.165861
AFFX-BioB-M_st
70.5
A
0.39692
AFFX-BioB-3_st
31.7
A
0.783476
AFFX-BioC-5_st
8.9
A
0.883887
AFFX-BioC-3_st
11.9
A
0.559354
AFFX-BioDn-5_st
99
A
0.262827
AFFX-BioDn-3_st
86.5
A
0.078002
12625 311 Kbytes .Supplementary data files not provided
