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Status
Public on Oct 22, 2005
Title
HA98-146A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
10.1
A
0.772442
AFFX-MurIL10_at
58.2
A
0.39692
AFFX-MurIL4_at
28.1
A
0.313723
AFFX-MurFAS_at
52.4
A
0.108979
AFFX-BioB-5_at
568.6
P
0.002023
AFFX-BioB-M_at
1097.9
P
0.000509
AFFX-BioB-3_at
501.5
P
0.002275
AFFX-BioC-5_at
1563.6
P
0.00007
AFFX-BioC-3_at
1332
P
0.000052
AFFX-BioDn-5_at
1266.5
P
0.000297
AFFX-BioDn-3_at
5751
P
0.000052
AFFX-CreX-5_at
15536.2
P
0.000044
AFFX-CreX-3_at
19356.4
P
0.000044
AFFX-BioB-5_st
147.2
A
0.078002
AFFX-BioB-M_st
28.5
A
0.60308
AFFX-BioB-3_st
27
A
0.883887
AFFX-BioC-5_st
19
A
0.834139
AFFX-BioC-3_st
14.9
A
0.686277
AFFX-BioDn-5_st
136.3
A
0.250796
AFFX-BioDn-3_st
160.6
A
0.175328
12625 312 Kbytes .Supplementary data files not provided
