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Status
Public on Oct 22, 2005
Title
HA96-61B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
8.2
A
0.969024
AFFX-MurIL10_at
18.3
A
0.760937
AFFX-MurIL4_at
5
A
0.883887
AFFX-MurFAS_at
45.8
A
0.216524
AFFX-BioB-5_at
754.4
P
0.00039
AFFX-BioB-M_at
1591
P
0.00007
AFFX-BioB-3_at
817.3
P
0.000509
AFFX-BioC-5_at
2423.4
P
0.000044
AFFX-BioC-3_at
1992
P
0.000052
AFFX-BioDn-5_at
2512.9
P
0.00007
AFFX-BioDn-3_at
10990.5
P
0.000044
AFFX-CreX-5_at
26092.4
P
0.000044
AFFX-CreX-3_at
31902.3
P
0.000044
AFFX-BioB-5_st
99.5
A
0.195266
AFFX-BioB-M_st
90
A
0.139482
AFFX-BioB-3_st
21.7
A
0.824672
AFFX-BioC-5_st
30.5
A
0.52976
AFFX-BioC-3_st
11.7
A
0.672921
AFFX-BioDn-5_st
65.4
A
0.287743
AFFX-BioDn-3_st
201.6
P
0.026111
12625 312 Kbytes .Supplementary data files not provided
