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Status
Public on Oct 22, 2005
Title
HA96-61A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
41.3
A
0.672921
AFFX-MurIL10_at
15.5
A
0.724854
AFFX-MurIL4_at
24.7
A
0.60308
AFFX-MurFAS_at
9.2
A
0.559354
AFFX-BioB-5_at
849
P
0.000509
AFFX-BioB-M_at
1944
P
0.000095
AFFX-BioB-3_at
952.6
P
0.000225
AFFX-BioC-5_at
2868.2
P
0.00006
AFFX-BioC-3_at
2389.1
P
0.00006
AFFX-BioDn-5_at
2713
P
0.000052
AFFX-BioDn-3_at
11816
P
0.000044
AFFX-CreX-5_at
28341.6
P
0.000044
AFFX-CreX-3_at
34423
P
0.000044
AFFX-BioB-5_st
78.5
A
0.39692
AFFX-BioB-M_st
55.6
A
0.455413
AFFX-BioB-3_st
34.5
A
0.83416
AFFX-BioC-5_st
19.2
A
0.834139
AFFX-BioC-3_st
81.4
A
0.262827
AFFX-BioDn-5_st
51.9
A
0.300606
AFFX-BioDn-3_st
299.8
P
0.021902
12625 312 Kbytes .Supplementary data files not provided
