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Status
Public on Oct 22, 2005
Title
HA96-37B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
17.7
A
0.659339
AFFX-MurIL10_at
17.1
A
0.574038
AFFX-MurIL4_at
30.9
A
0.262827
AFFX-MurFAS_at
41.1
A
0.250777
AFFX-BioB-5_at
596.8
P
0.001248
AFFX-BioB-M_at
1004.6
P
0.000446
AFFX-BioB-3_at
711
P
0.000581
AFFX-BioC-5_at
1622.3
P
0.000044
AFFX-BioC-3_at
1727
P
0.000044
AFFX-BioDn-5_at
2022.2
P
0.000127
AFFX-BioDn-3_at
9001.1
P
0.000052
AFFX-CreX-5_at
18647.5
P
0.000044
AFFX-CreX-3_at
23786.4
P
0.000044
AFFX-BioB-5_st
87.5
A
0.175328
AFFX-BioB-M_st
24.6
A
0.617401
AFFX-BioB-3_st
24.3
A
0.876428
AFFX-BioC-5_st
18.2
A
0.860518
AFFX-BioC-3_st
76.7
A
0.185131
AFFX-BioDn-5_st
93.4
A
0.300606
AFFX-BioDn-3_st
290.6
A
0.078002
12625 313 Kbytes .Supplementary data files not provided
