GEO help: Mouse over screen elements for information.
Status
Public on Oct 22, 2005
Title
HA96-37A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
44.9
A
0.631562
AFFX-MurIL10_at
20.9
A
0.60308
AFFX-MurIL4_at
36.9
A
0.123572
AFFX-MurFAS_at
37.6
A
0.262827
AFFX-BioB-5_at
300.1
P
0.000754
AFFX-BioB-M_at
800.2
P
0.00011
AFFX-BioB-3_at
351.7
P
0.000169
AFFX-BioC-5_at
972
P
0.00007
AFFX-BioC-3_at
676.2
P
0.000195
AFFX-BioDn-5_at
767.1
P
0.000127
AFFX-BioDn-3_at
4481.1
P
0.00006
AFFX-CreX-5_at
10135.6
P
0.000044
AFFX-CreX-3_at
14109.8
P
0.000044
AFFX-BioB-5_st
43.5
A
0.287743
AFFX-BioB-M_st
21
A
0.659339
AFFX-BioB-3_st
19.7
A
0.760937
AFFX-BioC-5_st
14.1
A
0.783476
AFFX-BioC-3_st
6.7
A
0.712257
AFFX-BioDn-5_st
47
A
0.313723
AFFX-BioDn-3_st
93
A
0.39692
12625 312 Kbytes .Supplementary data files not provided
