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Status
Public on Oct 22, 2005
Title
HA96-112B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
23.4
A
0.425962
AFFX-MurIL10_at
11.8
A
0.631562
AFFX-MurIL4_at
24.2
A
0.440646
AFFX-MurFAS_at
52.2
M
0.046482
AFFX-BioB-5_at
89.5
P
0.01667
AFFX-BioB-M_at
186.3
P
0.004998
AFFX-BioB-3_at
238.6
P
0.00141
AFFX-BioC-5_at
1212.5
P
0.000052
AFFX-BioC-3_at
1118
P
0.000044
AFFX-BioDn-5_at
1194.9
P
0.000225
AFFX-BioDn-3_at
5847.5
P
0.00006
AFFX-CreX-5_at
11879.6
P
0.000044
AFFX-CreX-3_at
14948.1
P
0.000044
AFFX-BioB-5_st
42.3
A
0.313723
AFFX-BioB-M_st
7.8
A
0.794268
AFFX-BioB-3_st
26.5
A
0.617401
AFFX-BioC-5_st
17.5
A
0.659339
AFFX-BioC-3_st
68.7
A
0.227636
AFFX-BioDn-5_st
88.2
A
0.41138
AFFX-BioDn-3_st
184.6
A
0.089478
12625 312 Kbytes .Supplementary data files not provided
