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Status
Public on Oct 22, 2005
Title
CA96-116B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE-control patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
35
A
0.686277
AFFX-MurIL10_at
13.3
A
0.712257
AFFX-MurIL4_at
9.9
A
0.368438
AFFX-MurFAS_at
40.2
A
0.165861
AFFX-BioB-5_at
487.6
P
0.001102
AFFX-BioB-M_at
1009.4
P
0.000095
AFFX-BioB-3_at
532
P
0.00034
AFFX-BioC-5_at
1556.6
P
0.00007
AFFX-BioC-3_at
1311
P
0.000044
AFFX-BioDn-5_at
1409.1
P
0.00007
AFFX-BioDn-3_at
5968.3
P
0.000052
AFFX-CreX-5_at
14639.7
P
0.000044
AFFX-CreX-3_at
19855.1
P
0.000044
AFFX-BioB-5_st
39.7
A
0.425962
AFFX-BioB-M_st
97
A
0.287743
AFFX-BioB-3_st
20.7
A
0.852061
AFFX-BioC-5_st
15.4
A
0.814869
AFFX-BioC-3_st
53.1
A
0.354453
AFFX-BioDn-5_st
53.4
A
0.368438
AFFX-BioDn-3_st
217
A
0.116113
12625 312 Kbytes .Supplementary data files not provided
