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Status
Public on Oct 22, 2005
Title
CA96-116A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE-control patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
12.4
A
0.617401
AFFX-MurIL10_at
9
A
0.794268
AFFX-MurIL4_at
31.8
A
0.382599
AFFX-MurFAS_at
20.7
A
0.48511
AFFX-BioB-5_at
533.8
P
0.000972
AFFX-BioB-M_at
1380.3
P
0.000297
AFFX-BioB-3_at
672.7
P
0.000509
AFFX-BioC-5_at
2005.5
P
0.000081
AFFX-BioC-3_at
1510.7
P
0.000044
AFFX-BioDn-5_at
1785.8
P
0.000052
AFFX-BioDn-3_at
8557.1
P
0.00006
AFFX-CreX-5_at
18510.1
P
0.000044
AFFX-CreX-3_at
23966.9
P
0.000044
AFFX-BioB-5_st
46.5
A
0.425962
AFFX-BioB-M_st
28.1
A
0.631562
AFFX-BioB-3_st
29.1
A
0.794268
AFFX-BioC-5_st
11
A
0.891021
AFFX-BioC-3_st
8.2
A
0.686277
AFFX-BioDn-5_st
108.2
A
0.195266
AFFX-BioDn-3_st
283.5
M
0.050229
12625 312 Kbytes .Supplementary data files not provided
