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Status
Public on Oct 22, 2005
Title
CA95-198B
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE-control patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
76.5
A
0.382599
AFFX-MurIL10_at
25.3
A
0.659339
AFFX-MurIL4_at
9.8
A
0.58862
AFFX-MurFAS_at
22
A
0.39692
AFFX-BioB-5_at
517.3
P
0.001248
AFFX-BioB-M_at
1097.2
P
0.000662
AFFX-BioB-3_at
682.2
P
0.000857
AFFX-BioC-5_at
1810.9
P
0.00007
AFFX-BioC-3_at
1625.9
P
0.000044
AFFX-BioDn-5_at
1693.5
P
0.000095
AFFX-BioDn-3_at
7934.8
P
0.00006
AFFX-CreX-5_at
17692.1
P
0.000044
AFFX-CreX-3_at
23636.9
P
0.000044
AFFX-BioB-5_st
78.4
A
0.340661
AFFX-BioB-M_st
29
A
0.60308
AFFX-BioB-3_st
36.7
A
0.876428
AFFX-BioC-5_st
20.8
A
0.824672
AFFX-BioC-3_st
64.7
A
0.340661
AFFX-BioDn-5_st
88.4
A
0.275146
AFFX-BioDn-3_st
244.6
A
0.083592
12625 312 Kbytes .Supplementary data files not provided
