GEO help: Mouse over screen elements for information.
Status
Public on Oct 22, 2005
Title
CA95-198A
Sample type
RNA
Source Name
Frontal cortex brain tissue from HIVE-control patient
Organism(s)
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
7.8
A
0.852061
AFFX-MurIL10_at
19.9
A
0.51489
AFFX-MurIL4_at
3.6
A
0.824672
AFFX-MurFAS_at
32.1
A
0.470241
AFFX-BioB-5_at
360.8
P
0.004998
AFFX-BioB-M_at
735.2
P
0.000754
AFFX-BioB-3_at
401.2
P
0.001796
AFFX-BioC-5_at
1318.9
P
0.000127
AFFX-BioC-3_at
1105.3
P
0.000044
AFFX-BioDn-5_at
1067.1
P
0.000169
AFFX-BioDn-3_at
5860.5
P
0.00006
AFFX-CreX-5_at
11946.9
P
0.000044
AFFX-CreX-3_at
15564.8
P
0.000044
AFFX-BioB-5_st
67.3
A
0.287743
AFFX-BioB-M_st
21.9
A
0.686277
AFFX-BioB-3_st
22.7
A
0.783476
AFFX-BioC-5_st
15.9
A
0.804734
AFFX-BioC-3_st
41.4
A
0.425962
AFFX-BioDn-5_st
44.3
A
0.354453
AFFX-BioDn-3_st
116.2
A
0.239063
12625 312 Kbytes .Supplementary data files not provided
