|
| Status |
Public on Jun 22, 2007 |
| Title |
DNaseI/Array multiple cell types |
| Project |
Pilot ENCODE
|
| Organism(s) |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
The goal of this study was to map DNaseI sensitivity and DNaseI hypersensitive sites over the ENCODE regions in multiple human cell types (GM06990, CACO2, HepG2).
Keywords: DNase/Array
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| |
|
| Overall design |
DNA fragments released from DNaseI cut sites in nuclear chromatin were collected and hybridized to the Nimblegen ENCODE array. DNaseI-fragmented naked DNA was used as a control.
|
| Web Link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| |
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| Contributor(s) |
Sabo PJ, Kuehn MS, Johnson BE, Stamatoyannopoulous JA, William NS, Sandstrom RS |
| Citation(s) |
16791208
|
| Submission date |
Jun 19, 2007 |
| Contact name |
Richard S Sandstrom |
| E-mail(s) |
sull@u.washington.edu
|
| Phone |
(206) 267-1091 x219
|
| URL |
http://www.gs.washington.edu
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Stamatoyannopoulos
|
| Street address |
2211 Elliott Avenue, 6th Floor
|
| City |
SEATTLE |
| State/province |
WA |
| ZIP/Postal code |
98121 |
| Country |
USA |
| |
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| Platforms (1) |
|
| Samples (3) |
| GSM178545 |
Large Scale Identification of DNaseI Hypersensitive Regions in Genomic DNA |
| GSM178547 |
Large Scale Identification of DNaseI Hypersensitive Regions in Genomic DNA (CACO2) |
| GSM178548 |
Large Scale Identification of DNaseI Hypersensitive Regions in Genomic DNA (HepG2) |
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