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| Status |
Public on Mar 28, 2007 |
| Title |
SMARCA6 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] |
| Project |
Pilot ENCODE
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| Organism(s) |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
SMARCA6 ChIP DNA was isolated from HeLaS3 cells and surveyed for binding in the ENCODE regions on NimbleGen ENCODE arrays. Use of this data requires permission from its producers.
Keywords: ChIP-chip
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| Overall design |
SMARCA6-ChIP DNA and reference ChIP DNA (background obtained with normal rabbit IgG) were isolated from untreated HeLaS3 cells. Combined SMARCA6 and reference ChIP DNA samples were hybridized to a NimbleGen ENCODE tiling array that contains overlapping 50nt oligonucleotide probes. The series is comprised of three biological replicates, hybridized separately to three arrays.
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| Web Link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| Contributor(s) |
Euskirchen G, Zhong G, Rozowsky JS, Gerstein MB, Snyder MP |
| Submission date |
Mar 26, 2007 |
| Contact name |
Guoneng Zhong |
| E-mail(s) |
guoneng.zhong@yale.edu
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| Organization name |
Yale Med
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| Street address |
300 George St
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| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06511 |
| Country |
USA |
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| Platforms (1) |
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| Samples (3) |
| GSM177383 |
SMARCA6 ChIP-ChIP from HeLaS3 Cells applied to the NimbleGen ENCODE Array Sample 1 |
| GSM177384 |
SMARCA6 ChIP-ChIP from HeLaS3 Cells applied to the NimbleGen ENCODE Array Sample 2 |
| GSM177385 |
SMARCA6 ChIP-ChIP from HeLaS3 Cells applied to the NimbleGen ENCODE Array Sample 3 |
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