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| Status |
Public on Nov 30, 2006 |
| Title |
ENCODE ChIP-chip for Tetra-acetylated Histone H4 on GM06990 Cells [unpublished] |
| Project |
Pilot ENCODE
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| Organism(s) |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
Tetra-acetylated Histone H4 ChIP-chip performed on GM06990 cells for Nimblegen ENCODE arrays which comprise 50mer oligonucleotides spaces every 38bps (overlapping by 12nts). Goal was to identify acetylated Histone H4-binding regions. Use of this data requires permission from its producers.
Keywords: ChIP-chip
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| Overall design |
DNA from immunoprecipitated chromatin using acetyl-Histone H4 antibody or normal rabbit IgG was hybridized to a Nimblegen ENCODE tiling array containing overlapping 50nt oligonucleotide probes. Samples are three biological replicates.
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| Web Link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| Contributor(s) |
Hartman SE, Zhong G, Rozowsky JS, Gerstein MB, Snyder MP |
| Submission date |
Nov 29, 2006 |
| Contact name |
Guoneng Zhong |
| E-mail(s) |
guoneng.zhong@yale.edu
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| Organization name |
Yale Med
|
| Street address |
300 George St
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| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06511 |
| Country |
USA |
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| Platforms (1) |
| GPL2533 |
Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab |
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| Samples (3) |
| GSM147442 |
Tetra-acetylated Histone H4 ChIP-chip on GM06990 cells Sample 1 |
| GSM147444 |
Tetra-acetylated Histone H4 ChIP-chip on GM06990 cells Sample 2 |
| GSM147445 |
Tetra-acetylated Histone H4 ChIP-chip on GM06990 cells Sample 3 |
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