|
| Status |
Public on Apr 23, 2009 |
| Title |
Duke-UNC-Texas-EBI ENCODE expression project |
| Project |
ENCODE
|
| Organism(s) |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
These samples are being analyzed by the Duke-UNC-Texas-EBI ENCODE consortium. Expression from these cell types will compared to three whole genome open chromatin methodologies: DNaseI hypersensitivity (DNase-seq), Formaldehyde-Assisted Isolation of Regulatory elements (FAIRE-seq), and Chromatin Immunoprecipitation (ChIP-seq) .
Keywords: cell type comparison
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| |
|
| Overall design |
These were processed on Affymetrix Exon 1.0 ST arrays to obtain expression data from all cell types being analyzed for open chromatin.
|
| Web Link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| |
|
| Contributor(s) |
Crawford G, Lieb J, Iyer V, Birney E, Furey T |
| Submission date |
Apr 23, 2009 |
| Contact name |
Sridar Chittur |
| E-mail(s) |
schittur@albany.edu
|
| Phone |
518-591-7215
|
| Organization name |
SUNY-University at Albany
|
| Department |
Center for Functional Genomics
|
| Lab |
Microarray Core
|
| Street address |
One Discovery Drive, CRC 342G
|
| City |
Rensselaer |
| State/province |
NY |
| ZIP/Postal code |
12144 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL5175 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] |
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| Samples (79)
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