|
| Status |
Public on Jan 24, 2009 |
| Title |
mRNP-mRNA Association Map (Tier I - G10, HuR, Imp, PABP) |
| Project |
ENCODE
|
| Organism(s) |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
In eukaryotic organisms gene regulatory networks require an additional level of coordination that links transcriptional and post-transcriptional processes. Messenger RNAs have traditionally been viewed as passive molecules in the pathway from transcription to translation. However, it is now clear that RNA-binding proteins play a major role in regulating multiple mRNAs in order to facilitate gene expression patterns. These tracks show the associated mRNAs that co-precipitated with the targeted RNA-binding proteins HuR, IMP-1 and PABP using RIP-Chip (Ribonomic) profiling
Keywords: RIP-Chip
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
|
| |
|
| Overall design |
Replicates for IPs comparable IP-inputs performed independently in each of the ENCODE Tier 1 cell lines.
|
| Web Link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
| |
|
| Submission date |
Jan 23, 2009 |
| Contact name |
Sridar Chittur |
| E-mail(s) |
schittur@albany.edu
|
| Phone |
518-591-7215
|
| Organization name |
SUNY-University at Albany
|
| Department |
Center for Functional Genomics
|
| Lab |
Microarray Core
|
| Street address |
One Discovery Drive, CRC 342G
|
| City |
Rensselaer |
| State/province |
NY |
| ZIP/Postal code |
12144 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL5175 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] |
|
| Samples (33)
|
|
| Supplementary file |
Size |
Download |
File type/resource |
| GSE14535_ELAVL1.GM12878.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
1.3 Mb |
(ftp)(http) |
BED |
| GSE14535_ELAVL1.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
1.3 Mb |
(ftp)(http) |
BED |
| GSE14535_IGF2BP1.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
1.2 Mb |
(ftp)(http) |
BED |
| GSE14535_PABPC1.GM12878.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
1.2 Mb |
(ftp)(http) |
BED |
| GSE14535_PABPC1.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
1.2 Mb |
(ftp)(http) |
BED |
| GSE14535_RAW.tar |
705.2 Mb |
(ftp)(http) |
TAR (of CEL) |
| GSE14535_README_BED.txt |
1.1 Kb |
(ftp)(http) |
TXT |
| GSE14535_Ribonomic_Workflow.pdf |
36.1 Kb |
(ftp)(http) |
PDF |
| GSE14535_T7Tag.GM12878.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
957.9 Kb |
(ftp)(http) |
BED |
| GSE14535_T7Tag.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed |
1.2 Mb |
(ftp)(http) |
BED |
| Raw data provided as supplementary file |
| Processed data included within Sample table |
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