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| Status |
Public on Sep 01, 2006 |
| Title |
UC Davis Human ENCODE array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism(s) |
Homo sapiens |
| Manufacturer |
NimbleGen Systems Inc. |
| Manufacture protocol |
as described in http://www.nimblegen.com/products/chip/new_designs.html
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| Submission date |
Jul 06, 2006 |
| Contact name |
Victor X Jin |
| E-mail(s) |
vxjin@ucdavis.edu
|
| Phone |
530-7549729
|
| Organization name |
UC Davis
|
| Department |
Genome Center
|
| Lab |
Peggy J. Farnham
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| Street address |
One Shields Ave. GBSF 4502
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| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
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| Samples (69)
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GSM118662, GSM118663, GSM118699, GSM118700, GSM118701, GSM118704
GSM153604, GSM153605, GSM153606, GSM153607, GSM153608, GSM153609, GSM153610, GSM153611, GSM153612, GSM153613, GSM153614, GSM215655, GSM215656, GSM215657, GSM215658, GSM215659, GSM215702, GSM215703, GSM215704, GSM215737, GSM215738, GSM215739, GSM215740, GSM215741, GSM215742, GSM215743, GSM215744, GSM215745, GSM215746, GSM215747, GSM215748, GSM215749, GSM215750, GSM215751, GSM215752, GSM215753, GSM215754, GSM215755, GSM215756, GSM215757, GSM215758, GSM215765, GSM215766, GSM215767, GSM215768, GSM215769, GSM234782, GSM234783, GSM254805, GSM254806, GSM254807, GSM254930, GSM254971, GSM254972, GSM254973, GSM304033, GSM304034, GSM304035, GSM304036, GSM304037, GSM304038, GSM304039, GSM304040
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| Series (9)
|
| GSE5251 |
Improvements in sample preparation for ChIP-chip assays |
| GSE6624 |
Identification of genes directly regulated by the oncogene ZNF217 using ChIP-chip assays |
| GSE6634 |
Genes Directly Regulated by the Oncogene ZNF217 Using ChIP-chip Assays on ENCODE and Promoter Arrays and Expression Data |
| GSE8667 |
Genome-wide Analysis of KAP1 Binding Suggests Auto-regulation of KRAB-ZNFs |
| GSE8716 |
A ChIP-chip analysis of E2F family in normal and tumor cells reveals interchangeable roles of E2F family members |
| GSE10076 |
ENCODE spikein, amplified DNA samples, NimbleGen arrays |
| GSE10090 |
ENCODE spikein, nonamplified DNA samples, NimbleGen arrays |
| GSE10114 |
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets |
| GSE12126 |
E2F in vivo binding specificity: comparison of consensus vs. non-consensus binding sites |
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| Data table header descriptions |
| ID |
|
| GENBANK_ACC |
|
| CHROMOSOME |
chromosome number |
| RANGE_STRAND |
always plus |
| RANGE_START |
start point in chromosome |
| RANGE_END |
end point in chromosome |
| GB_RANGE |
Accession.version[start..end] |
| Data table |
| ID |
GENBANK_ACC |
CHROMOSOME |
RANGE_STRAND |
RANGE_START |
RANGE_END |
GB_RANGE |
| ENm001_CHR07P116605462 |
NC_000007.11 |
chr7 |
+ |
116605462 |
116605511 |
NC_000007.11[116605462..116605511] |
| ENm001_CHR07P115880080 |
NC_000007.11 |
chr7 |
+ |
115880080 |
115880129 |
NC_000007.11[115880080..115880129] |
| ENm001_CHR07P116072816 |
NC_000007.11 |
chr7 |
+ |
116072816 |
116072865 |
NC_000007.11[116072816..116072865] |
| ENm001_CHR07P116736524 |
NC_000007.11 |
chr7 |
+ |
116736524 |
116736573 |
NC_000007.11[116736524..116736573] |
| ENm001_CHR07P116133464 |
NC_000007.11 |
chr7 |
+ |
116133464 |
116133513 |
NC_000007.11[116133464..116133513] |
| ENm001_CHR07P116774144 |
NC_000007.11 |
chr7 |
+ |
116774144 |
116774193 |
NC_000007.11[116774144..116774193] |
| ENm001_CHR07P115811642 |
NC_000007.11 |
chr7 |
+ |
115811642 |
115811691 |
NC_000007.11[115811642..115811691] |
| ENm001_CHR07P116606602 |
NC_000007.11 |
chr7 |
+ |
116606602 |
116606651 |
NC_000007.11[116606602..116606651] |
| ENm001_CHR07P116855844 |
NC_000007.11 |
chr7 |
+ |
116855844 |
116855893 |
NC_000007.11[116855844..116855893] |
| ENm001_CHR07P115823650 |
NC_000007.11 |
chr7 |
+ |
115823650 |
115823699 |
NC_000007.11[115823650..115823699] |
| ENm001_CHR07P117101704 |
NC_000007.11 |
chr7 |
+ |
117101704 |
117101753 |
NC_000007.11[117101704..117101753] |
| ENm001_CHR07P115810692 |
NC_000007.11 |
chr7 |
+ |
115810692 |
115810741 |
NC_000007.11[115810692..115810741] |
| ENm001_CHR07P116217482 |
NC_000007.11 |
chr7 |
+ |
116217482 |
116217531 |
NC_000007.11[116217482..116217531] |
| ENm001_CHR07P117209434 |
NC_000007.11 |
chr7 |
+ |
117209434 |
117209483 |
NC_000007.11[117209434..117209483] |
| ENm001_CHR07P116425684 |
NC_000007.11 |
chr7 |
+ |
116425684 |
116425733 |
NC_000007.11[116425684..116425733] |
| ENm001_CHR07P117225508 |
NC_000007.11 |
chr7 |
+ |
117225508 |
117225557 |
NC_000007.11[117225508..117225557] |
| ENm001_CHR07P117230258 |
NC_000007.11 |
chr7 |
+ |
117230258 |
117230307 |
NC_000007.11[117230258..117230307] |
| ENm001_CHR07P115843068 |
NC_000007.11 |
chr7 |
+ |
115843068 |
115843117 |
NC_000007.11[115843068..115843117] |
| ENm001_CHR07P116934504 |
NC_000007.11 |
chr7 |
+ |
116934504 |
116934553 |
NC_000007.11[116934504..116934553] |
| ENm001_CHR07P115900904 |
NC_000007.11 |
chr7 |
+ |
115900904 |
115900953 |
NC_000007.11[115900904..115900953] |
Total number of rows: 385149
Table truncated, full table size 35451 Kbytes.
| Supplementary data files not provided |
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