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Platform GPL3111 Query DataSets for GPL3111
Status Public on Dec 13, 2005
Title Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism(s) Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description 21bp resolution oligonucleotide tiling array.
Annotation in this record based on NCBI build 35.
 
Web link http://www.affymetrix.com/products/arrays/specific/encode.affx
Submission date Nov 21, 2005
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (68) GSM84453, GSM84454, GSM84455, GSM84456, GSM84495, GSM84496 
Series (9)
GSE3658 ENCODE: H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters
GSE3659 ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters
GSE3660 ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters

Data table header descriptions
ID
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x35_y959_chr1_147971142 x35_y959 TCGAGGCCTTAAGCTCTTGAGAGGT NC_000001.8 147971142 147971167 -
x487_y47_chr1_147971163 x487_y47 AGGTTCCTGAGGACAGATTGGAATC NC_000001.8 147971163 147971188 -
x551_y579_chr1_147971183 x551_y579 GAATCAGATACTGGGGAACAGAAGA NC_000001.8 147971183 147971208 -
x736_y1009_chr1_147971210 x736_y1009 TCAGGAGAAATATGAGGATCTCAAT NC_000001.8 147971210 147971235 -
x324_y243_chr1_147971231 x324_y243 CAATGAGAGAAAACTAGCATTGCCA NC_000001.8 147971231 147971256 -
x129_y213_chr1_147971258 x129_y213 AATGGAAGTGGCATAGGGAGTACTG NC_000001.8 147971258 147971283 -
x658_y1083_chr1_147971278 x658_y1083 TACTGGGACCTGATGAAAGAGAGAA NC_000001.8 147971278 147971303 -
x820_y523_chr1_147971300 x820_y523 GAATAGGAATTGAGGAAATCCAAGA NC_000001.8 147971300 147971325 -
x1192_y149_chr1_147971315 x1192_y149 AAATCCAAGACAACTAGGACTCCCC NC_000001.8 147971315 147971340 -
x148_y399_chr1_147971337 x148_y399 CCCCTGTACCTTATAGGCCTTGGTG NC_000001.8 147971337 147971362 -
x246_y1237_chr1_147971356 x246_y1237 TTGGTGACTACTCGGCGCTTCCTTC NC_000001.8 147971356 147971381 -
x833_y367_chr1_147971377 x833_y367 CTTCTTGGCTCTTCTGCTTCTCCAT NC_000001.8 147971377 147971402 -
x830_y939_chr1_147971397 x830_y939 TCCATCACTGGATGGTTCATCCCCT NC_000001.8 147971397 147971422 -
x1037_y443_chr1_147971418 x1037_y443 CCCTTCATCAATGTCAAAGTCAGAG NC_000001.8 147971418 147971443 -
x118_y653_chr1_147971440 x118_y653 GAGTCCACTTCGTCCTCTGTGTCTG NC_000001.8 147971440 147971465 -
x1265_y857_chr1_147971459 x1265_y857 TGTCTGACTGGTCCCCTTGATACTC NC_000001.8 147971459 147971484 -
x1185_y997_chr1_147971482 x1185_y997 TCATCATCTCCGGATTCCTAAGGAC NC_000001.8 147971482 147971507 -
x531_y473_chr1_147971498 x531_y473 CCTAAGGACACAGGGAGATAAGGGT NC_000001.8 147971498 147971523 -
x881_y777_chr1_147971520 x881_y777 GGTTGGCTGGCAATGGAAGCCTTAA NC_000001.8 147971520 147971545 -
x223_y1105_chr1_147971541 x223_y1105 TTAATGCCCCTTCAGGAGGAACAGA NC_000001.8 147971541 147971566 -

Total number of rows: 736787

Table truncated, full table size 67889 Kbytes.




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