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Platform GPL2508 Query DataSets for GPL2508
Status Public on Jun 07, 2005
Title Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv302.02.Z)
Technology type spotted oligonucleotide
Distribution non-commercial
Organism(s) Arabidopsis thaliana
Manufacturer The Galbraith Lab, University of Arizona
Manufacture protocol GeneMachines Omnigrid 300
 
Description This oligonucleotide array is produced from the Operon Version 3.0 Array-Ready Oligo set (AROS), which comprises 29,110 70-mer oligonucleotides representing 26,173 protein-coding genes, and 28,964 protein-encoding gene transcripts, and 87 microRNA gene precursors. AROS design is based on ATH1 release 5.0 of the TIGR Arabidopsis genome annotation database, and Release 4.0 of the miRNA Registry at the Sanger Institute. Various additional elements are printed as controls. Microarrays can be ordered from the Galbraith laboratory. This platform represents slides ATv302.02.001-ATv302.02.300 (http://www.ag.arizona.edu/microarray).
 
Contributor(s) Galbraith DW
Submission date Jun 01, 2005
Contact name David William Galbraith
E-mail(s) galbraith@arizona.edu
Phone 520-621-9153
URL http://latin.arizona.edu/galbraith
Organization name University of Arizona
Department Plant Sciences and Bio5 Institute
Lab Galbraith
Street address 303 Forbes Building
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
 
Samples (16) GSM263761, GSM280113, GSM280114, GSM280115, GSM280116, GSM280117 
Series (2)
GSE10425 Transcriptional profiling of Arabidopsis thaliana grown under arsenate stress
GSE11088 TEV-Arabidopsis pathosystem

Data table header descriptions
ID
Locus_Name Chromosomal based gene locus names
Oligo_ID Assigned by OPERON, or by STRATAGENE or the Galbraith Lab (control elements)
ORF
SPOT_ID
Description Description of the gene locus

Data table
ID Locus_Name Oligo_ID ORF SPOT_ID Description
10101 At5g49910 A005203_01 At5g49910 heat shock protein 70 / HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI:6746592
10102 At3g18780 A021047_01 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
10103 Alien5 Alien5 Control: Stratagene Spotreport Alien Oligo Control: Stratagene Spotreport Alien Oligo
10104 At1g64740 A001043_01 At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
10105 atc07 atc07 Randomly generated negative control Randomly generated negative control
10106 Alien1 Alien1 Control: Stratagene Spotreport Alien Oligo Control: Stratagene Spotreport Alien Oligo
10107 At3g18780 A021047_01 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
10108 atc03 atc03 Randomly generated negative control Randomly generated negative control
10109 At1g01950 A001280_01 At1g01950 armadillo/beta-catenin repeat family protein / kinesin motor family protein similar to kinesin-like protein GB:CAB41097 GI:5541717 from [Arabidopsis thaliana]; contains Pfam profiles PF00225: Kinesin motor domain, PF00514: Armadillo/beta-catenin-like repeat
10110 At1g02010 At30000106 At1g02010 cytokinesis-related Sec1 protein, putative similar to cytokinesis-related Sec1 protein KEULE [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains Pfam domain, PF00995: Sec1 family; non-consensus GC donor splice site at exon boundary 46833
10111 At1g02100 A200207_01 At1g02100 leucine carboxyl methyltransferase family protein contains Pfam PF04072: Leucine carboxyl methyltransferase domain; similar to Leucine carboxyl methyltransferase (Protein-leucine O- methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
10112 At1g02150 A005521_01 At1g02150 pentatricopeptide (PPR) repeat-containing protein low similiarity to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile: PF01535 PPR repeat
10113 At1g02305 A025916_01 At1g02305 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase [Nicotiana rustica] GI:609175; contains Pfam profile PF00112: Papain family cysteine protease
10114 At1g02360 A001000_01 At1g02360 chitinase, putative similar to chitinase precursor GI:5880845 from [Petroselinum crispum]
10115 At1g02530 At30000172 At1g02530 multidrug resistance P-glycoprotein, putative similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]
10116 At1g02590 A200222_01 At1g02590 aldehyde oxidase, putative similar to aldehyde oxidase GB:BAA28630 GI:3172044 from [Arabidopsis thaliana]
10117 At1g05200 A200249_01 At1g05200 glutamate receptor family protein (GLR3.4) plant glutamate receptor family, PMID:11379626
10118 At1g05250 At30000486 At1g05250 peroxidase, putative similar to peroxidase; peroxidase ATP11a [Arabidopsis thaliana] gi|1546688|emb|CAA67334
10119 At1g05420 A004552_01 At1g05420 ovate protein-related contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568
10120 At1g05460 At30000510 At1g05460 RNA helicase SDE3 (SDE3) identical to RNA helicase SDE3 [Arabidopsis thaliana] GI:13811296

Total number of rows: 31200

Table truncated, full table size 4671 Kbytes.




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