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Platform GPL189 Query DataSets for GPL189
Status Public on Dec 20, 2002
Title Sigma Genosys Panorama Escherichia coli Gene Array
Technology type spotted DNA/cDNA
Distribution commercial
Organism(s) Escherichia coli
Manufacturer Sigma Genosys
Manufacture protocol see manufacturer's web site
 
Description The Panorama Escherichia coli Gene Array was developed using E. coli ORFmers (PCR primers). The PCR primers were developed as part of a collaboration with the E. coli Genome Group, headed by Dr. Fred Blattner at the Department of Genetics, University of Wisconsin-Madison (http://www.genome.wisc.edu). The array contains 4,290 PCR-amplified ORFs, representing all of the protein-encoding genes.
 
Web link http://www.sigmagenosys.com/epp_microbia_ecoli_generalinfo.asp
Submission date Jun 13, 2002
Organization Sigma-Genosys
E-mail(s) ginformation@sial.com
Phone 800-234-5362
Fax 281-363-2212
URL http://www.sigma-genosys.com/
Department
Street address 1442 Lake Front Circle
City The Woodlands
State/province TX
ZIP/Postal code 77380
Country USA
 
Samples (73) GSM7886, GSM8110, GSM8111, GSM8112, GSM8113, GSM8114 
Series (6)
GSE533 High temperature adapted coli expression
GSE4941 Expression data from untreated and IAA treated cells
GSE5192 Electric current induced genes in Escherichia coli

Data table header descriptions
ID spot number
Array_Coord array coordinate
Gene_Name gene symbol/name
Gene_Desc gene description
GENOME ACC GenBank accession number
Protein_GI GenBank protein GI number
ORF Blattner number
Func_Cat revised functional category (46 groups)
Func revised general function (19 groups)

Data table
ID Array_Coord Gene_Name Gene_Desc GENOME ACC Protein_GI ORF Func_Cat Func
1 Field3:B2:2 araD L-ribulose-5-phosphate 4-epimerase AE000116 1786247 b0061 Degradation of small molecules: Carbon compounds enzyme
2 Field1:C1:1 araA L-arabinose isomerase AE000116 1786248 b0062 Degradation of small molecules: Carbon compounds enzyme
3 Field1:E1:1 araB L-ribulokinase AE000116 1786249 b0063 Degradation of small molecules: Carbon compounds enzyme
4 Field1:G1:1 araC arabinose operon regulatory protein AE000117 1786251 b0064 Degradation of small molecules: Carbon compounds regulator
5 Field1:I1:1 gcd glucose dehydrogenase AE000122 1786316 b0124 Degradation of small molecules: Carbon compounds enzyme
6 Field1:K1:1 sfsA sugar fermentation stimulation protein AE000124 1786340 b0146 Degradation of small molecules: Carbon compounds putative regulator
7 Field1:M1:1 yagG o460; 43 pct identical (8 gaps) to 441 residues of the 460 aa protein YICJ_ECOLI SW: P31435 AE000135 1786466 b0270 Not classified putative transport
8 Field1:O1:1 b0271 (o536) o536; 52 pct identical (3 gaps) to 534 residues of an approx. 536 aa protein XYNB_BACPU SW: P07129 AE000135 1786467 b0271 Not classified putative enzyme
9 Field1:A3:1 cynR cyn operon transcriptional activator AE000141 1786533 b0338 Central intermediary metabolism: Pool, multipurpose conversions regulator
10 Field1:C3:1 lacA f203; thiogalactoside acetyltransferase; 100 pct identical to THGA_ECOLI SW: P07464 (TTG start codon) AE000141 1786537 b0342 Degradation of small molecules: Carbon compounds enzyme
11 Field1:E3:1 lacZ beta-galactosidase AE000141 1786539 b0344 Degradation of small molecules: Carbon compounds enzyme
12 Field1:G3:1 lacI lactose operon repressor AE000141 1786540 b0345 Degradation of small molecules: Carbon compounds regulator
13 Field1:I3:1 mhpB 2,3-dihydroxyphenylpropionate 1,2-dioxygenase AE000142 1786544 b0348 Degradation of small molecules: Carbon compounds enzyme
14 Field1:K3:1 b0349 (o309) o309; This 309 aa ORF is 51 pct identical (2 gaps) to 279 residues of an approx. 288 aa protein BPHD_BURCE SW: P47229 AE000142 1786545 b0349 Degradation of small molecules: Carbon compounds enzyme
15 Field1:M3:1 mhpE 4-hydroxy-2-oxovalerate aldolase AE000142 1786547 b0351 Degradation of small molecules: Carbon compounds enzyme
16 Field1:O3:1 b0352 (o337) o337; This 337 aa ORF is 29 pct identical (18 gaps) to 254 residues of an approx. 384 aa protein NIFV_RHOCA SW: Q07179 AE000142 1786548 b0352 Degradation of small molecules: Carbon compounds enzyme
17 Field1:A5:1 araJ AraJ protein precursor AE000145 1786595 b0396 Degradation of small molecules: Carbon compounds transport
18 Field1:C5:1 malZ maltodextrin glucosidase AE000147 1786604 b0403 Degradation of small molecules: Carbon compounds enzyme
19 Field1:E5:1 pgm phosphoglucomutase AE000172 1786904 b0688 Degradation of small molecules: Carbon compounds enzyme
20 Field1:G5:1 b0713 (o244) o244; This 244 aa ORF is 52 pct identical (0 gaps) to 243 residues of an approx. 264 aa protein YH29_HAEIN SW: P45347 AE000174 1786931 b0713 Not classified phenotype

Total number of rows: 4314

Table truncated, full table size 625 Kbytes.






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