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Status
Public on Dec 20, 2002
Title
Sigma Genosys Panorama Escherichia coli Gene Array
Technology type
spotted DNA/cDNA
Distribution
commercial
Organism(s)
Escherichia coli
Manufacturer
Sigma Genosys
Manufacture protocol
see manufacturer's web site
Description
The Panorama Escherichia coli Gene Array was developed using E. coli ORFmers (PCR primers). The PCR primers were developed as part of a collaboration with the E. coli Genome Group, headed by Dr. Fred Blattner at the Department of Genetics, University of Wisconsin-Madison (http://www.genome.wisc.edu ). The array contains 4,290 PCR-amplified ORFs, representing all of the protein-encoding genes.
Web link
http://www.sigmagenosys.com/epp_microbia_ecoli_generalinfo.asp
Submission date
Jun 13, 2002
Organization
Sigma-Genosys
E-mail(s)
ginformation@sial.com
Phone
800-234-5362
Fax
281-363-2212
URL
http://www.sigma-genosys.com/
Department
Street address
1442 Lake Front Circle
City
The Woodlands
State/province
TX
ZIP/Postal code
77380
Country
USA
Samples (73)
GSM7886 , GSM8110 , GSM8111 , GSM8112 , GSM8113 , GSM8114
GSM8115 ,
GSM8116 ,
GSM8117 ,
GSM8118 ,
GSM8119 ,
GSM8120 ,
GSM111413 ,
GSM111414 ,
GSM111415 ,
GSM111416 ,
GSM111417 ,
GSM111418 ,
GSM111419 ,
GSM111420 ,
GSM111421 ,
GSM111422 ,
GSM111423 ,
GSM111424 ,
GSM116880 ,
GSM116881 ,
GSM116882 ,
GSM116883 ,
GSM116884 ,
GSM116885 ,
GSM153894 ,
GSM154801 ,
GSM154802 ,
GSM154803 ,
GSM154804 ,
GSM154805 ,
GSM154806 ,
GSM154807 ,
GSM154808 ,
GSM154809 ,
GSM154810 ,
GSM154812 ,
GSM154813 ,
GSM154814 ,
GSM154816 ,
GSM154818 ,
GSM154819 ,
GSM154820 ,
GSM154821 ,
GSM154823 ,
GSM154824 ,
GSM154825 ,
GSM263989 ,
GSM263993 ,
GSM263999 ,
GSM264002 ,
GSM264006 ,
GSM264011 ,
GSM264027 ,
GSM264030 ,
GSM264034 ,
GSM264037 ,
GSM264041 ,
GSM264044 ,
GSM264048 ,
GSM264052 ,
GSM264057 ,
GSM264062 ,
GSM264066 ,
GSM458187 ,
GSM458188 ,
GSM458189 ,
GSM458190
Series (6)
GSE533
High temperature adapted coli expression
GSE4941
Expression data from untreated and IAA treated cells
GSE5192
Electric current induced genes in Escherichia coli
GSE6712
Adapted tolerance to Benzalkonium chloride in E. coli K12
GSE10440
Escherichia coli treated with 13 antibiotics, 3 synergistic combinations, and IPTG
GSE18362
E coli MG1655 biofilm and planktonic gene expression
Data table header descriptions
ID
spot number
Array_Coord
array coordinate
Gene_Name
gene symbol/name
Gene_Desc
gene description
GENOME ACC
GenBank accession number
Protein_GI
GenBank protein GI number
ORF
Blattner number
Func_Cat
revised functional category (46 groups)
Func
revised general function (19 groups)
Data table
ID
Array_Coord
Gene_Name
Gene_Desc
GENOME ACC
Protein_GI
ORF
Func_Cat
Func
1
Field3:B2:2
araD
L-ribulose-5-phosphate 4-epimerase
AE000116
1786247
b0061
Degradation of small molecules: Carbon compounds
enzyme
2
Field1:C1:1
araA
L-arabinose isomerase
AE000116
1786248
b0062
Degradation of small molecules: Carbon compounds
enzyme
3
Field1:E1:1
araB
L-ribulokinase
AE000116
1786249
b0063
Degradation of small molecules: Carbon compounds
enzyme
4
Field1:G1:1
araC
arabinose operon regulatory protein
AE000117
1786251
b0064
Degradation of small molecules: Carbon compounds
regulator
5
Field1:I1:1
gcd
glucose dehydrogenase
AE000122
1786316
b0124
Degradation of small molecules: Carbon compounds
enzyme
6
Field1:K1:1
sfsA
sugar fermentation stimulation protein
AE000124
1786340
b0146
Degradation of small molecules: Carbon compounds
putative regulator
7
Field1:M1:1
yagG
o460; 43 pct identical (8 gaps) to 441 residues of the 460 aa protein YICJ_ECOLI SW: P31435
AE000135
1786466
b0270
Not classified
putative transport
8
Field1:O1:1
b0271 (o536)
o536; 52 pct identical (3 gaps) to 534 residues of an approx. 536 aa protein XYNB_BACPU SW: P07129
AE000135
1786467
b0271
Not classified
putative enzyme
9
Field1:A3:1
cynR
cyn operon transcriptional activator
AE000141
1786533
b0338
Central intermediary metabolism: Pool, multipurpose conversions
regulator
10
Field1:C3:1
lacA
f203; thiogalactoside acetyltransferase; 100 pct identical to THGA_ECOLI SW: P07464 (TTG start codon)
AE000141
1786537
b0342
Degradation of small molecules: Carbon compounds
enzyme
11
Field1:E3:1
lacZ
beta-galactosidase
AE000141
1786539
b0344
Degradation of small molecules: Carbon compounds
enzyme
12
Field1:G3:1
lacI
lactose operon repressor
AE000141
1786540
b0345
Degradation of small molecules: Carbon compounds
regulator
13
Field1:I3:1
mhpB
2,3-dihydroxyphenylpropionate 1,2-dioxygenase
AE000142
1786544
b0348
Degradation of small molecules: Carbon compounds
enzyme
14
Field1:K3:1
b0349 (o309)
o309; This 309 aa ORF is 51 pct identical (2 gaps) to 279 residues of an approx. 288 aa protein BPHD_BURCE SW: P47229
AE000142
1786545
b0349
Degradation of small molecules: Carbon compounds
enzyme
15
Field1:M3:1
mhpE
4-hydroxy-2-oxovalerate aldolase
AE000142
1786547
b0351
Degradation of small molecules: Carbon compounds
enzyme
16
Field1:O3:1
b0352 (o337)
o337; This 337 aa ORF is 29 pct identical (18 gaps) to 254 residues of an approx. 384 aa protein NIFV_RHOCA SW: Q07179
AE000142
1786548
b0352
Degradation of small molecules: Carbon compounds
enzyme
17
Field1:A5:1
araJ
AraJ protein precursor
AE000145
1786595
b0396
Degradation of small molecules: Carbon compounds
transport
18
Field1:C5:1
malZ
maltodextrin glucosidase
AE000147
1786604
b0403
Degradation of small molecules: Carbon compounds
enzyme
19
Field1:E5:1
pgm
phosphoglucomutase
AE000172
1786904
b0688
Degradation of small molecules: Carbon compounds
enzyme
20
Field1:G5:1
b0713 (o244)
o244; This 244 aa ORF is 52 pct identical (0 gaps) to 243 residues of an approx. 264 aa protein YH29_HAEIN SW: P45347
AE000174
1786931
b0713
Not classified
phenotype
Total number of rows: 4314 Table truncated, full table size 625 Kbytes .
Supplementary data files not provided