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Platform GPL1788 Query DataSets for GPL1788
Status Public on Jan 09, 2005
Title Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv301.02.Z)
Technology type spotted oligonucleotide
Distribution non-commercial
Organism(s) Arabidopsis thaliana
 
Description This oligonucleotide array is produced from the Operon Version 3.0 Array-Ready Oligo set (AROS), which comprises 29,110 70-mer oligonucleotides representing 26,173 protein-coding genes, and 28,964 protein-encoding gene transcripts, and 87 microRNA gene precursors. AROS design is based on ATH1 release 5.0 of the TIGR Arabidopsis genome annotation database, and Release 4.0 of the miRNA Registry at the Sanger Institute. Various additional elements are printed as controls. Microarrays can be ordered from the Galbraith laboratory. This platform represents slides ATv301.02.001-ATv301.02.300 (http://www.ag.arizona.edu/microarray).
 
Contributor(s) Galbraith DW
Submission date Jan 04, 2005
Contact name David William Galbraith
E-mail(s) galbraith@arizona.edu
Phone 520-621-9153
URL http://latin.arizona.edu/galbraith
Organization name University of Arizona
Department Plant Sciences and Bio5 Institute
Lab Galbraith
Street address 303 Forbes Building
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
 

Data table header descriptions
ID
Locus_Name Chromosomal based gene locus names
Spot ID Assigned by OPERON, or by the Galbraith Lab (control elements)
Description Description of the gene locus
CLONE_ID
SPOT_ID

Data table
ID Locus_Name Spot ID Description CLONE_ID SPOT_ID
10101 At1g01950 A001280_01 armadillo/beta-catenin repeat family protein / kinesin motor family protein similar to kinesin-like protein GB:CAB41097 GI:5541717 from [Arabidopsis thaliana]; contains Pfam profiles PF00225: Kinesin motor domain, PF00514: Armadillo/beta-catenin-like repeat At1g01950
10102 At1g02010 At30000106 cytokinesis-related Sec1 protein, putative similar to cytokinesis-related Sec1 protein KEULE [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains Pfam domain, PF00995: Sec1 family; non-consensus GC donor splice site at exon boundary 46833 At1g02010
10103 At1g02100 A200207_01 leucine carboxyl methyltransferase family protein contains Pfam PF04072: Leucine carboxyl methyltransferase domain; similar to Leucine carboxyl methyltransferase (Protein-leucine O- methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens} At1g02100
10104 At1g02150 A005521_01 pentatricopeptide (PPR) repeat-containing protein low similiarity to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile: PF01535 PPR repeat At1g02150
10105 At1g02305 A025916_01 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase [Nicotiana rustica] GI:609175; contains Pfam profile PF00112: Papain family cysteine protease At1g02305
10106 At1g02360 A001000_01 chitinase, putative similar to chitinase precursor GI:5880845 from [Petroselinum crispum] At1g02360
10107 At1g02530 At30000172 multidrug resistance P-glycoprotein, putative similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica] At1g02530
10108 At1g02590 A200222_01 aldehyde oxidase, putative similar to aldehyde oxidase GB:BAA28630 GI:3172044 from [Arabidopsis thaliana] At1g02590
10109 At1g05200 A200249_01 glutamate receptor family protein (GLR3.4) plant glutamate receptor family, PMID:11379626 At1g05200
10110 At1g05250 At30000486 peroxidase, putative similar to peroxidase; peroxidase ATP11a [Arabidopsis thaliana] gi|1546688|emb|CAA67334 At1g05250
10111 At1g05420 A004552_01 ovate protein-related contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 At1g05420
10112 At1g05460 At30000510 RNA helicase SDE3 (SDE3) identical to RNA helicase SDE3 [Arabidopsis thaliana] GI:13811296 At1g05460
10113 At1g05615 A200255_01 hypothetical protein At1g05615
10114 At1g05670 A004453_01 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] GI:7385017; contains Pfam profiles PF00201: UDP-glucoronosyl and UDP-glucosyl transferase, PF01535: PPR repeat At1g05670
10115 At1g05800 A001040_01 lipase class 3 family protein similar to DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana] GI:16215706; contains Pfam profile PF01764: Lipase At1g05800
10116 At1g05850 A024536_01 chitinase-like protein 1 (CTL1) similar to class I chitinase GI:7798656 from [Halimolobos perplexa var. perplexa]; contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328 At1g05850
10117 At1g08340 At30000860 rac GTPase activating protein, putative similar to rac GTPase activating protein 1 GI:3695059 from [Lotus japonicus]; contains Pfam profile PF00620: RhoGAP domain At1g08340
10118 At1g08400 A003150_01 chromosome structural maintenance protein-related contains weak similarity to RAD50-interacting protein 1 [Homo sapiens] gi|11967435|gb|AAG42101 At1g08400
10119 At1g08570 At30000884 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; similar to ESTs gb|T46281, gb|R83933, gb|N65879, emb|F14466, gb|N96726, gb|AA042340, and emb|Z18150 At1g08570
10120 At1g08630 A004431_01 L-allo-threonine aldolase-related similar to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA) (L-allo-threonine acetaldehyde-lyase) (SP:O07051) {Aeromonas jandaei}; similar to ESTs gb|R30517, gb|T42772, gb|R90493, and gb|R90493 At1g08630

Total number of rows: 30720

Table truncated, full table size 4672 Kbytes.




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