| Author | Journal | Year | Publication Title |
| Oeder S | BMC Genomics | 2007 | Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets |
| Lu Y | PLoS ONE | 2007 | Common human cancer genes discovered by integrated gene-expression analysis |
| Davis FP | Protein Sci | 2007 | Host–pathogen protein interactions predicted by comparative modeling |
| Arteaga-Salas JM | Brief Bioinform | 2007 | An overview of image-processing methods for Affymetrix GeneChips |
| Gosink MM | Bioinformatics | 2007 | Electronically subtracting expression patterns from a mixed cell population |
| Masotti D | Bioinformatics | 2008 | TOM: enhancement and extension of a tool suite for in silico approaches to multigenic hereditary disorders |
| Dudley J | Pac Symp Biocomput | 2008 | Enabling integrative genomic analysis of high-impact human diseases through text mining |
| Zhu Y | BMC Bioinformatics | 2008 | EzArray: a web-based highly automated Affymetrix expression array data management and analysis system |
| Tchagang AB | Mol Cancer Ther | 2008 | Early detection of ovarian cancer using group biomarkers |
| Sharma M | Am J Respir Crit Care Med | 2008 | A Genetic Variation in Inositol polyphosphate 4 phosphatase A Enhances Susceptibility to Asthma |
| Seo DC | Mol Cancer | 2007 | Gene expression profiling of cancer stem cell in human lung adenocarcinoma A549 cells |
| Riz I | Oncogene | 2007 | TLX1/HOX11-induced hematopoietic differentiation blockade |
| Chen M | Genetics | 2007 | A statistical framework for expression quantitative trait loci mapping |
| Crawford NP | Proc Natl Acad Sci U S A. | 2008 | Bromodomain 4 activation predicts breast cancer survival |
| Zhao XM | Nucleic Acids Res | 2008 | Uncovering signal transduction networks from high-throughput data by integer linear programming |
| Pavelka N | Mol Cell Proteomics | 2008 | Statistical similarities between transcriptomics and quantitative shotgun proteomics data |
| Sharma M | Am J Respir Crit Care Med | 2008 | A genetic variation in inositol polyphosphate 4 phosphatase a enhances susceptibility to asthma |
| Hassane DC | Blood | 2008 | Discovery of agents that eradicate leukemia stem cells using an in silico screen of public gene expression data |
| Grundberg E | Physiol Genomics | 2008 | Systematic Assessment of the Human Osteoblast Transcriptome in Resting and Induced Primary Cells |
| Lin SL | Carcinogenesis | 2008 | Androgen receptor regulates CD168 expression and signaling in prostate cancer |
| Hibbs MA | Bioinformatics | 2007 | Exploring the functional landscape of gene expression: directed search of large microarray compendia |
| Zilliox MJ | Nat Methods | 2007 | A gene expression bar code for microarray data |
| Stirewalt DL | Genes Chromosomes Cancer | 2007 | Identification of genes with abnormal expression changes in acute myeloid leukemia |
| Geerts D | Clin Cancer Res | 2007 | Expression of Prenylated Rab Acceptor 1 Domain Family, Member 2 (PRAF2) in Neuroblastoma: Correlation with Clinical Features, Cellular Localization, and Cerulenin-Mediated Apoptosis Regulation |
| Thompson DM | Mol Cell Biol | 2007 | Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae |
| Bosco EE | J Clin Invest | 2007 | The retinoblastoma tumor suppressor modifies the therapeutic response of breast cancer |
| Ramsey VG | Development | 2007 | The maturation of mucus-secreting gastric epithelial progenitors into digestive-enzyme secreting zymogenic cells requires Mist1 |
| Hurt EM | Blood | 2007 | Integrated molecular profiling of SOD2 expression in multiple myeloma |
| Brass DM | Proc Am Thorac Soc | 2007 | Using mouse genomics to understand idiopathic interstitial fibrosis |
| Turley RS | Cancer Res | 2007 | The type III transforming growth factor-beta receptor as a novel tumor suppressor gene in prostate cancer |
| Murray DB | Proc Natl Acad Sci U S A | 2007 | Regulation of yeast oscillatory dynamics |
| Buckanovich RJ | J Clin Oncol | 2007 | Tumor vascular proteins as biomarkers in ovarian cancer |
| Jia Z | Genetics | 2007 | Mapping quantitative trait loci for expression abundance |
| Arredouani MS | J Immunol | 2007 | Scavenger Receptors SR-AI/II and MARCO limit pulmonary dendritic cell migration and allergic airway inflammation |
| Sukhdeo K | Proc Natl Acad Sci U S A | 2007 | Targeting the beta-catenin/TCF transcriptional complex in the treatment of multiple myeloma |
| Hertzberg L | Bioinformatics | 2007 | STOP: searching for transcription factor motifs using gene expression |
| Lu ZH | Am J Pathol | 2007 | Hypoxia-inducible factor-1 facilitates cervical cancer progression in human papillomavirus type 16 transgenic mice |
| Jenner MW | Blood | 2007 | Gene mapping and expression analysis of 16q loss of heterozygosity identifies WWOX and CYLD as being important in determining clinical outcome in multiple myeloma |
| Paulson KE | Cancer Res | 2007 | Alterations of the HBP1 transcriptional repressor are associated with invasive breast cancer |
| Wu M | Cancer Res | 2007 | Repression of BCL2 by the tumor suppressor activity of the lysyl oxidase propeptide inhibits transformed phenotype of lung and pancreatic cancer cells |
| Lim WK | Bioinformatics | 2007 | Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks |
| Axelsen JB | Proc Natl Acad Sci U S A | 2007 | Genes overexpressed in different human solid cancers exhibit different tissue-specific expression profiles |
| Clement TM | Reproduction | 2007 | Regulation of the gonadal transcriptome during sex determination and testis morphogenesis: comparative candidate genes |
| Ottolenghi C | Hum Mol Genet | 2007 | Loss of Wnt4 and Foxl2 leads to female-to-male sex reversal extending to germ cells |
| Alberstein M | RNA | 2007 | Regulation of transcription of the RNA splicing factor hSlu7 by Elk-1 and Sp1 affects alternative splicing |
| Jarboe JS | Cancer Res | 2007 | Expression of interleukin-13 receptor alpha2 in glioblastoma multiforme: implications for targeted therapies |
| Gary-Gouy H | J Immunol | 2007 | Natural phosphorylation of CD5 in chronic lymphocytic leukemia B cells and analysis of CD5-regulated genes in a B cell line suggest a role for CD5 in malignant phenotype |
| Gamberoni G | Bioinformatics | 2007 | Fun&Co: identification of key functional differences in transcriptomes |
| Novershtern N | Am J Respir Cell Mol Biol | 2007 | A Functional and Regulatory Map of Asthma |
| Foat BC | Nucleic Acids Res | 2007 | TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors |
| Strand AD | J Neurosci | 2007 | Expression profiling of Huntington's disease models suggests that brain-derived neurotrophic factor depletion plays a major role in striatal degeneration |
| Meir T | Invest Ophthalmol Vis Sci | 2007 | Molecular characteristics of liver metastases from uveal melanoma |
| Tsang J | Mol Cell | 2007 | MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals |
| Hipp J | BJU Int | 2007 | Microarray analysis of exstrophic human bladder smooth muscle |
| Chen R | Nat Methods | 2007 | AILUN: reannotating gene expression data automatically |
| Agarwal S | Proc Natl Acad Sci U S A | 2006 | Isolation, characterization, and genetic complementation of a cellular mutant resistant to retroviral infection |
| Barth AS | J Am Coll Cardiol | 2006 | Identification of a common gene expression signature in dilated cardiomyopathy across independent microarray studies |
| Liu F | Cancer Res | 2006 | A genome-wide screen reveals functional gene clusters in the cancer genome and identifies EphA2 as a mitogen in glioblastoma |
| DeVoss J | J Exp Med | 2006 | Spontaneous autoimmunity prevented by thymic expression of a single self-antigen |
| Sternlicht MD | Cancer Epidemiol Biomarkers Prev | 2006 | Prognostic value of PAI1 in invasive breast cancer: evidence that tumor-specific factors are more important than genetic variation in regulating PAI1 expression |
| Nguyen LN | Clin Cancer Res | 2006 | Sorting nexin 1 down-regulation promotes colon tumorigenesis |
| Kim YC | FEBS Lett | 2006 | Pan-genome isolation of low abundance transcripts using SAGE tag |
| Dolan ME | BMC Bioinformatics | 2006 | Genomes as geography: using GIS technology to build interactive genome feature maps |
| Kliman RM | Gene | 2005 | Unusual usage of AGG and TTG codons in humans and their viruses |
| Kim SY | BMC Bioinformatics | 2005 | PAGE: parametric analysis of gene set enrichment |
| Gorlov IP | Cancer Res | 2007 | Seizure 6-Like (SEZ6L) Gene and Risk for Lung Cancer |
| Ucar D | Bioinformatics | 2007 | Construction of a Reference Gene Association Networkf rom Multiple Profling Data: Application to Data Analysis |
| Chandramouli A | Carcinogenesis | 2007 | Haploinsufficiency of the cdc2l gene contributes to skin cancer development in mice |
| Fujibuchi W | Bioinformatics | 2007 | CellMontage: Similar Expression Profile Search Server |
| Obayashi T | Nucleic Acids Res | 2008 | COXPRESdb: a database of coexpressed gene networks in mammals |
| Nam S | Nucleic Acids Res | 2008 | miRGator: an integrated system for functional annotation of microRNAs |
| Bianchetti L | Nucleic Acids Res | 2007 | SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages |
| Kim B | Cancer Res | 2007 | Clinical Validity of the Lung Cancer Biomarkers Identified by Bioinformatics Analysis of Public Expression Data |
| Green ML | Bioinformatics | 2007 | Using genome-context data to identify specific types of functional associations in pathway/genome databases |
| Dyer MD | Bioinformatics | 2007 | Computational prediction of host-pathogen protein–protein interactions |
| Huang Y | Bioinformatics | 2007 | Systematic discovery of functional modules and context-specific functional annotation of human genome |
| Shiga M | Bioinformatics | 2007 | Annotating gene function by combining expression data with a modular gene network |
| Talavera D | PLoS Comput Biol | 2007 | The (In)dependence of Alternative Splicing and Gene Duplication |
| Dybbs M | PLoS Genet | 2005 | Using Microarrays to Facilitate Positional Cloning: Identification of Tomosyn as an Inhibitor of Neurosecretion |
| Frith MC | PLoS Genet | 2006 | The Abundance of Short Proteins in the Mammalian Proteome |
| Elnitski LL | Genome Res | 2007 | The ENCODEdb portal: Simplified access to ENCODE Consortium data |
| Hanada K | Genome Res | 2007 | A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection |
| Sun M | Genome Res | 2006 | Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity |
| Hong SE | Bioinformatics | 2006 | HCNet: a database of heart and calcium functional network |
| Xiong H | Bioinformatics | 2006 | Non-linear tests for identifying differentially expressed genes or genetic networks |
| Seo J | Bioinformatics | 2006 | An interactive power analysis tool for microarray hypothesis testing and generation |
| Gao G | Bioinformatics | 2006 | DRTF: a database of rice transcription factors |
| Li H | Bioinformatics | 2006 | Systematic intervention of transcription for identifying network response to disease and cellular phenotypes |
| Liu D | Nucleic Acids Res | 2007 | Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis |
| Knowles DG | Mol Biol Evol | 2006 | High Rate of Recent Intron Gain and Loss in Simultaneously Duplicated Arabidopsis Genes |
| Rossi S | Nucleic Acids Res | 2006 | TOM: a web-based integrated approach for identification of candidate disease genes |
| Wang X | Nucleic Acids Res | 2006 | HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma |
| Song L | Bioinformatics | 2007 | Gene selection via the BAHSIC family of algorithms |
| Wei Z | Bioinformatics | 2007 | A Markov random field model for network-based analysis of genomic data |
| Shi Y | Bioinformatics | 2007 | Inferring pairwise regulatory relationships from multiple time series datasets |
| Carey VJ | Bioinformatics | 2007 | GGtools: analysis of genetics of gene expression in bioconductor |
| McRae AF | Hum Mol Genet | 2007 | Replicated effects of sex and genotype on gene expression in human lymphoblastoid cell lines |
| Pan F | Nucleic Acids Res | 2007 | Gene Aging Nexus: a web database and data mining platform for microarray data on aging |
| Hung MS | Hum Mol Genet | 2006 | Identification of the transcription factor ARNTL2 as a candidate gene for the type 1 diabetes locus Idd6 |
| Nilsson B | Genome Biol | 2007 | Threshold-free high-power methods for the ontological analysis of genome-wide gene expression studies |
| Herschkowitz JI | Genome Biol | 2007 | Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors |
| Irizarry RA | Genome Biol | 2006 | Feature-level exploration of a published Affymetrix GeneChip control dataset |
| Hu Z | Nucleic Acids Res | 2007 | VisANT 3.0: new modules for pathway visualization, editing, prediction and construction |
| Smith SC | Clin Cancer Res | 2007 | Expression of Ral GTPases, Their Effectors, and Activators in Human Bladder Cancer |
| Yi Y | Genome Biol | 2007 | Strategy for encoding and comparison of gene expression signatures |
| Chalmel F |
Proc Natl Acad Sci U S A |
2007 |
The conserved transcriptome in human and rodent male gametogenesis |
| Davis S |
Bioinformatics |
2007 |
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor |
| Hardie WD |
Am J Respir Cell Mol Biol |
2007 |
Genomic Profile of Matrix and Vasculature Remodeling in TGF {alpha}-induced Pulmonary Fibrosis |
| Montano M |
J Clin Endocrinol Metab |
2007 |
Transcriptional Profiling Of Testosterone-Regulated Genes In The Skeletal Muscle Of Hiv-Infected Men Experiencing Weight Loss |
| Reimand J |
Nucleic Acids Res |
2007 |
g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments |
| Henz SR |
Plant Physiol |
2007 |
Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis |
| Luan Y |
Biostatistics |
2007 |
Group additive regression models for genomic data analysis |
| Schmid C |
Nucleic Acids Res |
2007 |
MADAP a flexible clustering tool for the interpretation of one-dimensional genome annotation data |
| O'Shaughnessy PJ |
Endocrinology |
2007 |
Altered expression of genes involved in regulation of vitamin a metabolism solute transportation and cytoskeletal function in the androgen-insensitive tfm mouse testis |
| Graham RR |
Proc Natl Acad Sci U S A |
2007 |
Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus |
| Choi JK |
Genetics |
2007 |
Environmental effects on gene expression phenotype have regional biases in the human genome |
| Simmen FA |
Am J Physiol Gastrointest Liver Physiol |
2007 |
Dysregulation of intestinal crypt cell proliferation and villus cell migration in mice lacking Kruppel-like factor 9 (Klf9) |
| Cheng CW |
Biol Reprod |
2007 |
Quantitative cellular and molecular analysis of the effect of progesterone withdrawal in a murine model of decidualization |
| Yoneya T |
Bioinformatics |
2007 |
A hidden Markov model-based approach for identifying timing differences in gene expression under different experimental factors |
| Crasto CJ |
J Am Med Inform Assoc |
2007 |
NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediation |
| Alberts R |
BMC Bioinformatics |
2007 |
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse human and rat |
| Platts AE |
Hum Mol Genet |
2007 |
Success and Failure in Human Spermatogenesis as Revealed by Teratozoospermic RNAs |
| Inaoka H |
Proc Natl Acad Sci U S A |
2007 |
Evidence of spatially bound gene regulation in Mus musculus: Decreased gene expression proximal to microRNA genomic location |
| Kopitar-Jerala N |
FEBS Lett |
2006 |
The role of cystatins in cells of the immune system |
| Koli K |
Am J Pathol |
2006 |
Bone morphogenetic protein-4 inhibitor gremlin is overexpressed in idiopathic pulmonary fibrosis |
| Duarte NC |
Proc Natl Acad Sci U S A | .
2007 |
Global reconstruction of the human metabolic network based on genomic and bibliomic data |
| Jeffery IB |
Bioinformatics |
2006 |
Integrating transcription factor binding site information with gene expression datasets |
| Yu X |
Toxicol Sci |
2006 |
A system-based approach to interpret dose- and time-dependent microarray data: quantitative integration of gene ontology analysis for risk assessment |
| Bao L |
Nucleic Acids Res |
2007 |
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits |
| Kim RD |
Genome Biol |
2004 |
Improving identification of differentially expressed genes in microarray studies using information from public databases |
| Butte AJ |
AMIA Annu Symp Proc |
2006 |
Finding disease-related genomic experiments within an international repository: first steps in translational bioinformatics |
| Forton JT |
Genome Res |
2006 |
Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping |
| Yoon S |
Bioinformatics |
2006 |
Large scale data mining approach for gene-specific standardization of microarray gene expression data |
| Butte AJ |
Nat. Biotechnol |
2006 |
Creation and implications of a phenome-genome network |
| Wolfe CJ |
BMC Bioinformatics |
2005 |
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks |
| Saxena V |
Nucleic Acids Res |
2006 |
Absolute enrichment: gene set enrichment analysis for homeostatic systems |
| Calcagno AM |
Mol Pharm |
2006 |
Comparison of drug transporter levels in normal colon colon cancer and Caco-2 cells: impact on drug disposition and discovery |
| Ge X |
Bioinformatics |
2006 |
A large quantity of novel human antisense transcripts detected by LongSAGE |
| Huttenhower C |
Bioinformatics |
2006 |
A scalable method for integration and functional analysis of multiple microarray data sets |
| Nam D |
Bioinformatics |
2006 |
ADGO: analysis of differentially expressed gene sets using composite GO annotation |
| Papana A |
Bioinformatics |
2006 |
CART variance stabilization and regularization for high-throughput genomic data |
| Argraves GL |
BMC Bioinformatics |
2006 |
ArrayQuest: a web resource for the analysis of DNA microarray data |
| Radde N |
Bioinformatics |
2006 |
Systematic component selection for gene-network refinement |
| Hothorn T |
Biostatistics |
2006 |
Survival ensembles |
| Jeffery IB |
BMC Bioinformatics |
2006 |
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data |
| Wei Z |
Biostatistics |
2006 |
Nonparametric pathway-based regression models for analysis of genomic data |
| Radmacher MD |
Blood |
2006 |
Independent confirmation of a prognostic gene-expression signature in adult acute myeloid leukemia with a normal karyotype: A cancer and leukemia group B study |
| Page GP |
BMC Bioinformatics |
2006 |
The PowerAtlas: a power and sample size atlas for microarray experimental design and research |
| Soupene E |
Br J Haematol |
2006 |
Identification of an erythroid ATP-dependent aminophospholipid transporter |
| Wang XS |
Clin Cancer Res |
2006 |
Rapid identification of UCA1 as a very sensitive and specific unique marker for human bladder carcinoma |
| Montano M |
Genes Immun |
2006 |
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana |
| Kolpakov F |
Nucleic Acids Res |
2007 |
CYCLONET--an integrated database on cell cycle regulation and carcinogenesis |
| Crawford GE |
Genome Res |
2006 |
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) |
| Yu H |
Hum Mol Genet |
2006 |
Origination and evolution of a human-specific transmembrane protein gene c1orf37-dup |
| Van Winkle LJ |
Hum Reprod Update |
2006 |
System B0+ amino acid transport regulates the penetration stage of blastocyst implantation with possible long-term developmental consequences through adulthood |
| Robertson KP |
Infect Immun |
2006 |
Characterization of Bacteroides fragilis Hemolysins and Regulation and Synergistic Interactions of HlyA and HlyB |
| Grasberger H |
J Biol Chem |
2006 |
Identification of the maturation factor for dual oxidase. Evolution of an eukaryotic operon equivalent |
| Stahlman MT |
J Histochem Cytochem |
2006 |
Expression of ABCA3 in Developing Lung and Other Tissues |
| Brown AL |
J Leukoc Biol |
2006 |
Genetic regulators of myelopoiesis and leukemic signaling identified by gene profiling and linear modeling |
| Ponomarev I |
J Neurosci |
2006 |
Transcriptional signatures of cellular plasticity in mice lacking the alpha1 subunit of GABAA receptors |
| Harvatine KJ |
J Nutr |
2006 |
SREBP1 and thyroid hormone responsive spot 14 (S14) are involved in the regulation of bovine mammary lipid synthesis during diet-induced milk fat depression and treatment with CLA |
| Moalic Y |
J Virol |
2006 |
Porcine endogenous retrovirus integration sites in the human genome: features in common with those of murine leukemia virus |
| Fonseca R |
Leukemia |
2006 |
Prognostic value of chromosome 1q21 gain by fluorescent in situ hybridization and increase CKS1B expression in myeloma |
| Byrnes JK |
Mol Biol Evol |
2006 |
Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion |
| Shen D |
Int J Mol Med |
2005 |
In silico identification of breast cancer genes by combined multiple high throughput analyses |
| Hoen DR |
Mol Biol Evol |
2006 |
Transposon-mediated expansion and diversification of a family of ULP-like genes |
| Semon M |
Mol Biol Evol |
2006 |
Evolutionary origin and maintenance of coexpressed gene clusters in mammals |
| Sutherland HG |
Mol Cell Biol |
2006 |
Disruption of Ledgf/Psip1 results in perinatal mortality and homeotic skeletal transformations |
| Hever A |
Mol Hum Reprod |
2006 |
Molecular characterization of human adenomyosis |
| Calvo S |
Nat Genet |
2006 |
Systematic identification of human mitochondrial disease genes through integrative genomics |
| Carroll JS |
Nat Genet |
2006 |
Genome-wide analysis of estrogen receptor binding sites |
| Graham RR |
Nat Genet |
2006 |
A common haplotype of interferon regulatory factor 5 (IRF5) regulates splicing and expression and is associated with increased risk of systemic lupus erythematosus |
| Murdoch S |
Nat Genet |
2006 |
Mutations in NALP7 cause recurrent hydatidiform moles and reproductive wastage in humans |
| Potti A |
Nat Med |
2006 |
Genomic signatures to guide the use of chemotherapeutics |
| Boyer LA |
Nature |
2006 |
Polycomb complexes repress developmental regulators in murine embryonic stem cells |
| Malcomber ST |
New Phytol |
2006 |
Evolution of unisexual flowers in grasses (Poaceae) and the putative sex-determination gene TASSELSEED2 (TS2) |
| Siddiqui AS |
Nucleic Acids Res |
2006 |
Sequence biases in large scale gene expression profiling data |
| Vinther J |
Nucleic Acids Res |
2006 |
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture |
| Wang YP |
Nucleic Acids Res |
2006 |
GEPS: the Gene Expression Pattern Scanner |
| Dunne J |
Oncogene |
2006 |
siRNA-mediated AML1/MTG8 depletion affects differentiation and proliferation-associated gene expression in t(8;21)-positive cell lines and primary AML blasts |
| Mullins JJ |
Physiol Genomics |
2006 |
IDENTIFICATION OF A HUMAN ORTHOLOGUE OF THE MOUSE Dcpp GENE LOCUS ENCODING A NOVEL MEMBER OF THE CSP-1/Dcpp SALIVARY PROTEIN FAMILY |
| Yuan Z |
Physiol Genomics |
2006 |
Genomic organization promoter activity and expression of the human choline transporter-like protein 1 |
| Pesaresi P |
Plant Cell |
2006 |
Nuclear Photosynthetic Gene Expression Is Synergistically Modulated by Rates of Protein Synthesis in Chloroplasts and Mitochondria |
| Legendre M |
PLoS Comput Biol |
2006 |
Differential repression of alternative transcripts: a screen for miRNA targets |
| Saarela J |
PLoS Genet |
2006 |
PRKCA and multiple sclerosis: association in two independent populations |
| Lewinski MK |
PLoS Pathog |
2006 |
Retroviral DNA integration: viral and cellular determinants of target-site selection |
| Kaminski N |
Proc Am Thorac Soc |
2006 |
Gene expression profiling as a window into idiopathic pulmonary fibrosis pathogenesis: can we identify the right target genes? |
| Georgieva L |
Proc Natl Acad Sci U S A |
2006 |
Convergent evidence that oligodendrocyte lineage transcription factor 2 (OLIG2) and interacting genes influence susceptibility to schizophrenia |
| Miller LD |
Proc Natl Acad Sci U S A |
2005 |
An expression signature for p53 status in human breast cancer predicts mutation status transcriptional effects and patient survival |
| Missirlis F |
Proc Natl Acad Sci U S A |
2006 |
Characterization of mitochondrial ferritin in Drosophila |
| Norris AW |
Proc Natl Acad Sci U S A |
2006 |
Analysis of gene expression in pathophysiological states: balancing false discovery and false negative rates |
| Sood P |
Proc Natl Acad Sci U S A |
2006 |
Cell-type-specific signatures of microRNAs on target mRNA expression |
| Itman C |
Reproduction |
2006 |
All in the family: TGF-beta family action in testis development |
| Daniel VC |
Respirology |
2006 |
Developmental signalling pathways in lung cancer |
| Drukker M |
Stem Cells |
2006 |
Human embryonic stem cells and their differentiated derivatives are less susceptible to immune rejection than adult cells |
| Wiese C |
Stem Cells |
2006 |
Signals from embryonic fibroblasts induce adult intestinal epithelial cells to form nestin-positive cells with proliferation and multilineage differentiation capacity in vitro |
| Fisher JS |
Am J Physiol Endocrinol Metab |
2005 |
Muscle contractions AICAR and insulin cause phosphorylation of an AMPK-related kinase |
| Sengoelge G |
Am J Physiol Renal Physiol |
2005 |
A SAGE-based comparison between glomerular and aortic endothelial cells |
| Cabusora L |
Bioinformatics |
2005 |
Differential network expression during drug and stress response |
| Hu J |
Bioinformatics |
2005 |
Practical FDR-based sample size calculations in microarray experiments |
| Ott S |
Bioinformatics |
2005 |
Superiority of network motifs over optimal networks and an application to the revelation of gene network evolution |
| Reverter A |
Bioinformatics |
2005 |
A rapid method for computationally inferring transcriptome coverage and microarray sensitivity |
| Vinterbo SA |
Bioinformatics |
2005 |
Small fuzzy and interpretable gene expression based classifiers |
| Vasta V |
Biol Reprod |
2005 |
Identification of a New Variant of PDE1A Calmodulin-Stimulated Cyclic Nucleotide Phosphodiesterase Expressed in Mouse Sperm |
| Adamia S |
Blood |
2005 |
Intronic splicing of hyaluronan synthase 1 (HAS1): a biologically relevant indicator of poor outcome in multiple myeloma |
| Blaveri E |
Clin Cancer Res |
2005 |
Bladder cancer outcome and subtype classification by gene expression |
| Chiu RW |
Clin Chem |
2005 |
Fetal rhesus D mRNA is not detectable in maternal plasma |
| Bing N |
Genetics |
2005 |
Genetical genomics analysis of a yeast segregant population for transcription network inference |
| Brockington M |
Hum Mol Genet |
2005 |
Localization and functional analysis of the LARGE family of glycosyltransferases: significance for muscular dystrophy |
| Enver T |
Hum Mol Genet |
2005 |
Cellular differentiation hierarchies in normal and culture-adapted human embryonic stem cells |
| Semon M |
Hum Mol Genet |
2005 |
Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance |
| Ozyildirim AM |
Invest Ophthalmol Vis Sci |
2005 |
The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts |
| Bazzini C |
J Biol Chem |
2005 |
Thiazide-sensitive NaCl cotransporter in the intestine: Possible role of HCTZ in the intestinal Ca2+ uptake |
| Newkirk HL |
Nucleic Acids Res |
2005 |
Distortion of quantitative genomic and expression hybridization by Cot-1 DNA: mitigation of this effect |
| Stangeland B |
J Exp Bot |
2005 |
Molecular analysis of Arabidopsis endosperm and embryo promoter trap lines: reporter-gene expression can result from T-DNA insertions in antisense orientation in introns and in intergenic regions in addition to sense insertion at the 5' end of genes |
| Zhou S |
Biochem Biophys Res Commun |
2005 |
Expression profiles of mouse dendritic cell sarcoma are similar to those of hematopoietic stem cells or progenitors by clustering and principal component analyses. |
| Boyle J |
Bioinformatics |
2005 |
Gene-Expression Omnibus integration and clustering tools in SeqExpress |
| Reid JF |
J Natl Cancer Inst |
2005 |
Limits of predictive models using microarray data for breast cancer clinical treatment outcome |
| Nakai H |
J Virol |
2005 |
Large-scale molecular characterization of adeno-associated virus vector integration in mouse liver |
| Hodanova K |
Kidney Int |
2005 |
Mapping of a new candidate locus for uromodulin-associated kidney disease (UAKD) to chromosome 1q41 |
| Oue N |
Cancer Res |
2004 |
Gene expression profile of gastric carcinoma: identification of genes and tags potentially involved in invasion metastasis and carcinogenesis by serial analysis of gene expression |
| Michiels S |
Lancet |
2005 |
Prediction of cancer outcome with microarrays: a multiple random validation strategy |
| Chen Q |
Mol Cell Biochem |
2005 |
Cloning of cDNAs with PDCD2(C) domain and their expressions during apoptosis of HEK293T cells |
| Yant SR |
Mol Cell Biol |
2005 |
High-resolution genome-wide mapping of transposon integration in mammals |
| Scott MS |
Mol Cell Proteomics |
2005 |
Identifying regulatory subnetworks for a set of genes |
| Rico-Bautista E |
Mol Endocrinol |
2005 |
Suppressor of cytokine signaling-2 deficiency induces molecular and metabolic changes that partially overlap with growth hormone-dependent effects |
| Watanabe H |
Mol Hum Reprod |
2005 |
A novel protein Depp which is induced by progesterone in human endometrial stromal cells activates Elk-1 transcription factor |
| Zhou XJ |
Nat Biotechnol |
2005 |
Functional annotation and network reconstruction through cross-platform integration of microarray data |
| Dai M |
Nucleic Acids Res |
2005 |
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data |
| Qian J |
Nucleic Acids Res |
2005 |
Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation |
| Tanino M |
Nucleic Acids Res |
2005 |
The Human Anatomic Gene Expression Library (H-ANGEL) the H-Inv integrative display of human gene expression across disparate technologies and platforms |
| Chen SH |
Physiol Genomics |
2005 |
Gene expression analysis of Tek/Tie2 signaling |
| Staswick PE |
Plant Cell |
2005 |
Characterization of an Arabidopsis Enzyme Family That Conjugates Amino Acids to Indole-3-Acetic Acid |
| Park SG |
Proc Natl Acad Sci U S A |
2005 |
Human lysyl-tRNA synthetase is secreted to trigger proinflammatory response |
| Persson S |
Proc Natl Acad Sci U S A |
2005 |
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets |
| Middendorf M |
Bioinformatics |
2004 |
Predicting genetic regulatory response using classification |
| Smid M |
Bioinformatics |
2004 |
GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms |
| Comeron JM |
Genetics |
2004 |
Selective and Mutational Patterns Associated With Gene Expression in Humans: Influences on Synonymous Composition and Intron Presence |
| Lee HK |
Genome Res |
2004 |
Coexpression Analysis of Human Genes Across Many Microarray Data Sets |
| Vitt U |
Genome Res |
2004 |
Identification of Candidate Disease Genes by EST Alignments Synteny and Expression and Verification of Ensembl Genes on Rat Chromosome 1q43-54 |
| Huopaniemi L |
Glycobiology |
2004 |
Inflammation-induced transcriptional regulation of Golgi transporters required for the synthesis of sulfo sLex glycan epitopes |
| Gomez-Merino FC |
J Biol Chem |
2004 |
AtDGK2 a Novel Diacylglycerol Kinase from Arabidopsis thaliana Phosphorylates 1-Stearoyl-2-arachidonoyl-sn-glycerol and 12-Dioleoyl-sn-glycerol and Exhibits Cold-inducible Gene Expression |
| Narezkina A |
J Virol |
2004 |
Genome-Wide Analyses of Avian Sarcoma Virus Integration Sites |
| Jordan IK |
Mol Biol Evol |
2004 |
Conservation and Co-Evolution in the Scale-Free Human Gene Coexpression Network |
| Laderoute KR |
Mol Cell Biol |
2004 |
Glucose Utilization Is Essential for Hypoxia-Inducible Factor 1{alpha}-Dependent Phosphorylation of c-Jun |
| Shima N |
Mol Cell Biol |
2004 |
The Mouse Genomic Instability Mutation chaos1 Is an Allele of Polq That Exhibits Genetic Interaction with Atm |
| Cheng KW |
Nat Med |
2004 |
The RAB25 small GTPase determines aggressiveness of ovarian and breast cancers |
| Divina P |
Nucleic Acids Res |
2004 |
The Mouse SAGE Site: database of public mouse SAGE libraries |
| Haverty PM |
Nucleic Acids Res |
2004 |
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis |
| Volinia S |
Nucleic Acids Res |
2004 |
GOAL: automated Gene Ontology analysis of expression profiles |
| Challacombe JF |
Physiol Genomics |
2004 |
Evaluation of the host transcriptional response to human cytomegalovirus infection |
| Robinson SJ |
Plant Physiol |
2004 |
Maximizing the Efficacy of SAGE Analysis Identifies Novel Transcripts in Arabidopsis |
| Rodwell GE |
PLoS Biol |
2004 |
A transcriptional profile of aging in the human kidney |
| Puffenberger EG |
Proc Natl Acad Sci U S A |
2004 |
Mapping of sudden infant death with dysgenesis of the testes syndrome (SIDDT) by a SNP genome scan and identification of TSPYL loss of function |
| Zerbini LF |
Proc Natl Acad Sci U S A |
2004 |
NF-{kappa}B-mediated repression of growth arrest- and DNA-damage-inducible proteins 45{alpha} and {gamma} is essential for cancer cell survival |
| Panepucci RA |
Stem Cells |
2004 |
Comparison of Gene Expression of Umbilical Cord Vein and Bone Marrow-Derived Mesenchymal Stem Cells |
| Cheadle C |
Appl Bioinformatics |
2003 |
Application of z-score transformation to Affymetrix data. |
| Walter-Yohrling J |
Cancer Res |
2003 |
Identification of Genes Expressed in Malignant Cells That Promote Invasion |
| Hauser MA |
Hum Mol Genet |
2003 |
Genomic convergence: identifying candidate genes for Parkinson's disease by combining serial analysis of gene expression and genetic linkage |
| Olivero M |
Nucleic Acids Res |
2003 |
Amplification of repeat-containing transcribed sequences (ARTS): a transcriptome fingerprinting strategy to detect functionally relevant microsatellite mutations in cancer |
| Li S |
Biol Direct |
2006 |
Too much data but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression |
| Wu X |
Science |
2003 |
Transcription Start Regions in the Human Genome Are Favored Targets for MLV Integration |
