|
Experiment |
Type |
Platform(s) |
No. Samples in experiment |
Supplementary files |
Release date |
| GSE8177:Me3K27 Histone H3 ChIP DNA from HeLa S3 cells | DNase I sensitivity | GPL2131:Nimblegen ENCODE Array | 3 | TXT | 2007-06-22 |
| GSE8073:Me3K27 Histone H3 ChIP DNA from HeLa S3 cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | GFF | 2007-06-12 |
| GSE7872:Ludwig Institute/UCSD ENCODE project June 2007 Release | ChIP-chip | GPL1454: RenLab ENCODE PCR tiling array GPL4559:ENCODE NimbleGen hg17 tiling array | 51 | GPR, PAIR | 2007-06-01 |
| GSE7467:ENCODE Transcript Mapping for Human HeLa Total RNA | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 3 | CEL | 2007-04-06 |
| GSE7437:ENCODE Transcript Mapping for Human HeLa Poly(A)+ RNA | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 3 | CEL | 2007-04-06 |
| GSE7372:NRSF ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-03-28 |
| GSE7371:SMARCA6 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-03-28 |
| GSE7370:Brg1 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2313:Nimblegen ENCODE Array | 3 | None | 2007-03-28 |
| GSE7118:Ludwig Institute/UCSD ENCODE project March 2007 Release | ChIP-chip | GPL4559:ENCODE NimbleGen hg17 tiling array | 124 | GPR, PAIR | 2007-03-01 |
| GSE6900:ENCODE ChIP-chip for Rel A (p65) using polyclonal antibody (N-) on TNF-alpha-stimulated HeLaS3 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2007-02-14 |
| GSE6899:ENCODE ChIP-chip for Rel A (p65) using polyclonal antibody (C-20) on TNF-alpha-stimulated HeLaS3 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2007-02-14 |
| GSE6898:BAF155 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-02-14 |
| GSE6897:Ini1 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-02-14 |
| GSE6896:BAF170 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-02-14 |
| GSE6895:Ini1 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 4 | None | 2007-02-14 |
| GSE6892:STAT1 (Interferon-alpha) ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2007-02-14 |
| GSE6624:Identification of genes directly regulated by the oncogene ZNF217 using ChIP-chip assays | ChIP-chip | GPL3980: UC Davis Human ENCODE array | 11 | TXT | 2007-01-25 |
| GSE6394:ENCODE ChIP-chip for RNA Polymerase II using monoclonal antibody (8WG16) on GM06990 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2006-11-30 |
| GSE6393:ENCODE ChIP-chip for Tetra-acetylated Histone H4 on GM06990 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2006-11-30 |
| GSE6392:ENCODE ChIP-chip for RNA Polymerase II using polyclonal antibody on GM06990 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2006-11-30 |
| GSE6391:ENCODE ChIP-chip for RNA Polymerase II using monoclonal antibody (8WG16) on HeLaS3 Cells [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2006-11-30 |
| GSE6390:ENCODE ChIP-chip for RNA Polymerase II using polyclonal antibody (N-20) on HeLaS3 Cells [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2006-11-30 |
| GSE6389:ENCODE ChIP-chip for Tetra-acetylated Histone H4 on HeLaS3 Cells [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2006-09-01 |
| GSE6375:E2F4 and Myc ChIP-chip perfomed on Nimblegen hg17 ENCODE arrays | ChIP-chip | GPL3514:ENCODE NimbleGen hg17_04252005 tiling array | 12 | None | 2007-01-20 |
| GSE6292:Ludwig Institute/UCSD ENCODE project | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 24 | None | 2007-01-01 |
| GSE6273:Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array GPL4558:ENCODE NimbleGen hg16 tiling array GPL4559:ENCODE NimbleGen hg17 tiling array | 64 | None | 2007-01-01 |
| GSE5559:Analysis of the vertebrate insulator protein CTCF binding sites in the human genome | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 3 | None | 2007-01-01 |
| GSE5251:Improvements in sample preparation for ChIP-chip assays | ChIP-chip | GPL3980: UC Davis Human ENCODE array | 6 | None | 2006-09-01 |
| GSE5053:ENCODE Spike-in ChIP-chip Experiments | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 42 | CEL | 2006-08-08 |
| GSE4902:Suz12, EZH2, EED1, H3me3K27 binding sites in Ntera cells | ChIP-chip | GPL3792: Nimblegen Human ENCODE array | 4 | None | 2006-06-06 |
| GSE4886:FAIRE performed in human foreskin fibroblast cells | FAIRE | GPL3792: ENCODE NimbleGen hg17_04252005 tiling array | 4 | None | 2006-09-01 |
| GSE4355:E2F1 binding sites in MCF7 cells ENCODE | ChIP-chip | GPL3514: ENCODE NimbleGen hg17_04252005 tiling array GPL3508:ENCODE NimbleGen hg16 tiling array | 3 | None | 2006-03-09 |
| GSE4354:MYC binding sites in HeLa cells | ChIP-chip | GPL3514: ENCODE NimbleGen hg17_04252005 tiling array | 3 | None | 2006-03-09 |
| GSE4338:IgG control ChIP in HeLa cells | ChIP-chip | GPL3508:ENCODE NimbleGen hg16 tiling array | 3 | None | 2006-03-09 |
| GSE4337:POLII localization in HeLa cells | ChIP-chip | GPL3508:ENCODE NimbleGen hg16 tiling array | 3 | None | 2006-03-09 |
| GSE4334:DNaseI/Array GM06990 | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 1 | None | 2006-07-27 |
| GSE4306:HeLa E2F1 ChIP-chip experiments | ChIP-chip | GPL3489:ENCODE NimbleGen hg17 tiling array | 3 | None | 2006-02-28 |
| GSE3663:ENCODE: PolyA+ RNA from cytosol of HeLa and GM06990 cells (NCBIv35) | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 2 | None | 2005-12-13 |
| GSE3662:ENCODE: PolyA+ RNA from retinoic acid stimulated HL-60 cells at 4 time points (NCBIv35) | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3661:ENCODE: p63ActD & p63_mActD ChIP of retinoic acid-stimulated ME180 cells at 0 h (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 2 | None | 2005-12-13 |
| GSE3660:ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3659:ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3658:ENCODE: H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3550:ENCODE: ChIP-chip for BAF170 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 4 | GFF | 2005-11-04 |
| GSE3549:ENCODE: ChIP-chip for BAF155 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 4 | GFF | 2005-11-04 |
| GSE3450:ENCODE: ChIP-chip for TAF II p250 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 2 | GFF | 2005-10-19 |
| GSE3449:ENCODE: ChIP-chip for FOS on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | GFF | 2005-10-19 |
| GSE3448:ENCODE: ChIP-chip for JUN on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | GFF | 2005-10-19 |
| GSE2813:ENCODE: (HG17) region-wide binding of a few antibodies in IFg treated and untreated HeLa cells using nimblegen array | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 12 | None | 2005-06-15 |
| GSE2802:ENCODE: PolyA+ RNA from retinoic acid-stimulated HL60 cells at 4 timepoints (II) (NCBIv34) | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2801:ENCODE: GWLA analysis of SUZ12 and triMeH3K27 binding in HeLa cells | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 6 | GPR | 2005-06-12 |
| GSE2800:ENCODE: PolyA+ RNA from cytosols of GM06990 and Hela cells (NCBIv34) | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 2 | CEL | 2005-06-17 |
| GSE2799:ENCODE: TFIIB-R ChIP-chip of retinoic acid-stimulated HL60 cells (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 1 | CEL | 2005-06-17 |
| GSE2798:ENCODE: SIRT1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2797:ENCODE: RARecA ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2796:ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2795:ENCODE: PU1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2794:ENCODE: P300 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2793:ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2792:ENCODE: H3K27T ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2791:ENCODE: CTCF ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2790:ENCODE: CEBPe ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2789:ENCODE: Brg1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2735:ENCODE: two phosphorylation states of RNAP II ChIP-chip from HeLa cells | ChIP-chip | GPL2138:Affymetrix ENCODE Tiling Array - SENSE | 18 | CEL | 2006-10-11 |
| GSE2730:ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 51 | GPR, TIFF | 2005-06-03 |
| GSE2720:ENCODE: Transcript mapping for human placental poly(A)+ RNA and human NB4 cell line total RNA | Expression | GPL2105:Human 36mer ENCODE region oligonucleotide tiling array (Yale design #1) | 21 | None | 2005-06-04 |
| GSE2714:ENCODE: ChIP-chip for STAT1 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array GPL2132:Maskless Photolithographic 50mer ENCODE Array (FWD) GPL2133:Maskless Photolithographic 36mer ENCODE Array (FWD) | 10 | None | 2005-05-27 |
| GSE2679:ENCODE: Transcript Mapping for Total RNA from Human NB4 Cells untreated, treated with RA, and treated with TPA | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 11 | CEL | 2005-05-19 |
| GSE2678:ENCODE: Transcript Mapping for Human Neutrophil (PMN) Total RNA | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 10 | CEL | 2005-05-19 |
| GSE2671:ENCODE: Transcript Mapping for Human Placental Poly(A)+ RNA | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 3 | CEL | 2005-05-18 |
| GSE2142:ENCODE: RNAP transcription factor binding using Affymetrix genome tiling array (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-01-31 |
| GSE2141:ENCODE: PolyA+ RNA from retinoic acid-stimulated HL60 cells at 4 timepoints (I) (NCBIv34) | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-01-31 |
| GSE2072:ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 6 | TIFF | 2004-12-16 |
| GSE1778:ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 24 | TIFF | 2004-09-21 |
|
Experiment |
Organism |
Type |
No. Samples in experiment |
Lab, Organization |
Release date |
| GSE16702:ChIP-chip of PolII in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 45 | Kevin White, University of Chicago | 2009-06-24 |
| GSE15378:Drosophila OSS cell small RNA libraries | Drosophila melanogaster | RNA-Seq | 4 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2009-06-09 |
| GSE16330:Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep1day_TotalRNA_p200_338-340-342_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16329:Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep4day_TotalRNA_p200_356-358-360_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16328:Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep3day_TotalRNA_p200_350-352-354_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16327:Dm_OregonR_embryo_14-16h_poly-Ap_p200_130-131-132_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16326:Dm_OregonR_embryo_2-4h_poly-Ap_p200_127-128-129_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16325:Dm_ML-DmBG2-c2_TotalRNA_p200_470-472-474_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16324:Dm_Kc167_polyApRNA_p200_145-146-147_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16323:Dm_Kc167_nuclearRNA_p200_475-476-477_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16322:Dm_CME_W2_TotalRNA_p200_460-462-464_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16321:Dm_mbn2_TotalRNA_p200_044-046-048_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16320:Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_poly-Ap_p200_412-413-414_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16319:Dm_y[1]cn[1] bw[1] sp[1]_embryo_4-6h_TotalRNA_p200_224-226-228_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16318:Dm_y[1]cn[1] bw[1] sp[1]_embryo_2-4h_poly-Ap_p200_406-407-408_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16317:Dm_y[1]cn[1] bw[1] sp[1]_embryo_2-4h_TotalRNA_p200_218-220-222_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16316:Dm_y[1]cn[1] bw[1] sp[1]_embryo_22-24h_TotalRNA_p200_278-280-282_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16315:Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_TotalRNA_p200_272-274-276_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 2 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16314:Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_poly-Ap_p200_433-434-435_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16313:Dm_y[1]cn[1] bw[1] sp[1]_embryo_18-20h_poly-Ap_p200_430-431-432_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 2 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16312:Dm_y[1]cn[1] bw[1] sp[1]_embryo_18-20h_TotalRNA_p200_266-268-270_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16311:Dm_y[1]cn[1] bw[1] sp[1]_embryo_16-18h_poly-Ap_p200_427-428-429_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16310:Dm_y[1]cn[1] bw[1] sp[1]_embryo_16-18h_TotalRNA_p200_260-262-264_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16309:Dm_y[1]cn[1] bw[1] sp[1]_embryo_14-16h_poly-Ap_p200_424-425-426_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 2 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16308:Dm_y[1]cn[1] bw[1] sp[1]_embryo_14-16h_TotalRNA_p200_254-256-258_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16307:Dm_y[1]cn[1] bw[1] sp[1]_embryo_12-14h_poly-Ap_p200_421-422-423_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16306:Dm_y[1]cn[1] bw[1] sp[1]_embryo_12-14h_TotalRNA_p200_248-250-252_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16305:Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_poly-Ap_p200_418-419-420_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16304:Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_TotalRNA_p200_242-244-246_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16303:Dm_y[1]cn[1] bw[1] sp[1]_embryo_8-10h_poly-Ap_p200_415-416-417_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16302:Dm_y[1]cn[1] bw[1] sp[1]_embryo_8-10h_TotalRNA_p200_236-238-240_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16301:Dm_y[1]cn[1] bw[1] sp[1]_embryo_0-2h_poly-Ap_p200_403-404-405_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16300:Dm_y[1]cn[1] bw[1] sp[1]_embryo_0-2h_TotalRNA_p200_212-214-216_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16299:Dm_y[1]cn[1] bw[1] sp[1]_larval_L3_gut_stage1_TotalRNA_p200_440-442-444_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16298:Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_5dayPostEclosion_TotalRNA_p200_380-382-384_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16297:Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_1dayPostEclosion_TotalRNA_p200_368-370-372_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16296:Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_5dayPostEclosion_TotalRNA_p200_386-388-390_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16295:Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_1dayPostEclosion_TotalRNA_p200_374-376-378_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16294:Dm_y[1]cn[1] bw[1] sp[1]_prepupa_WhitePrePupae_TotalRNA_p200_326-328-330_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16293:Dm_y[1]cn[1] bw[1] sp[1]_larval_L2_TotalRNA_p200_290-292-294_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16292:Dm_y[1]cn[1] bw[1] sp[1]_larval_L1_TotalRNA_p200_284-286-288_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16291:Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_TotalRNA_p200_230-232-234_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 2 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16290:Dm_DmD16-c3_TotalRNA_p200_138-136-138_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16289:Dm_Sg4_TotalRNA_p200_200-202-204_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16288:Dm_S3_TotalRNA_p200_104-106-108_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16287:Dm_S2R+_TotalRNA_p200_020-022-024_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16286:Dm_S2-DRSC_TotalRNA_p200_014-016-018_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16285:Dm_S1_TotalRNA_p200_026-028-030_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16284:Dm_DmD9_TotalRNA_p200_072-074-076_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16283:Dm_DmD8_TotalRNA_p200_206-208-210_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16282:Dm_DmD4-c1_TotalRNA_p200_140-142-144_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16281:Dm_DmD32_TotalRNA_p200_164-166-168_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16280:Dm_DmD21_TotalRNA_p200_050-052-054_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16279:Dm_DmD20-c5_TotalRNA_p200_188-190-192_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16278:Dm_DmD20-c2_TotalRNA_p200_182-184-186_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16277:Dm_DmD17-c3_TotalRNA_p200_194-196-198_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16276:Dm_ML-DmD11_TotalRNA_p200_170-172-174_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16275:Dm_ML-DmBG3-c2_TotalRNA_p200_122-124-126_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16274:Dm_ML-DmBG1-c2_TotalRNA_p200_116-118-120_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16273:Dm_Kc167_TotalRNA_p200_002-004-006_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16272:Dm_GM2_TotalRNA_p200_008-010-012_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16271:Dm_CME-W1-Cl.8p_TotalRNA_p200_060-062-064_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16270:Dm_CME-L1_TotalRNA_p200_086-088-090_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16269:Dm_1182-4H_TotalRNA_p200_038-040-042_38bp | Drosophila melanogaster | Transcript analysis (tiling) | 3 | Susan Celniker, Lawrence Berkeley National Laboratory | 2009-06-02 |
| GSE16268:JL00004_MIX1_N2_MXEMB | Drosophila melanogaster | ChIP-chip | 3 | Jason Lieb, University of North Carolina at Chapel Hill | 2009-06-02 |
| GSE16245:Genomewide analysis of Insulator protein binding sites in Drosophila embryos at E0-12 | Drosophila melanogaster | ChIP-chip | 16 | Kevin White, University of Chicago | 2009-05-29 |
| GSE16133:Strome SGF3165_FLAG_MES4FLAG_EEMB | Caenorhabditis elegans | ChIP-chip | 9 | Jason Lieb, University of North Carolina at Chapel Hill | 2009-05-19 |
| GSE16132:JL00003_DPY26_N2_MXEMB | Caenorhabditis elegans | ChIP-chip | 3 | Jason Lieb, University of North Carolina at Chapel Hill | 2009-05-19 |
| GSE16055:ChIP-chip of gsbnpurif in Drosophila embryos at E7-24h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-13 |
| GSE16013:Genome-wide maps of chromatin state in staged Drosophila embryos | Drosophila melanogaster | ChIP-Seq | 58 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15997:ChIP-chip of brm in Drosophila embryos at pupae time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15996:ChIP-chip of snr1 in Drosohila embryos at Pupae time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15995:ChIP-chip of end300 in Drosophila embryos at E7-24h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15994:ChIP-chip of UBX7701 in Drosophila embryos at E3-8h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15993:ChIP-chip of UBX2 in Drosophila embryos at E3-8h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15992:ChIP-chip of UBX1 in Drosophila embryos at E3-8h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15990:ChIP-chip of GROAviva in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15989:ChIP-chip of ZFH1 in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15988:ChIP-chip of UBX7701 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15987:ChIP-chip of TTK in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15986:ChIP-chip of Stat92E in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15985:ChIP-chip of RUN7659 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15984:ChIP-chip of KN in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15983:ChIP-chip of INVGFP in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15982:ChIP-chip of INV7657 in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15981:ChIP-chip of H3K9me3 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15980:ChIP-chip of H3K4me3 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15979:ChIP-chip of H3K36me3 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15978:ChIP-chip of Gro3 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15965:ChIP-chip of FTZ-F1 in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15964:ChIP-chip of ENserum in Drosophila embryos at E0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15963:ChIP-chip of dll in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15961:ChIP-chip of dCtBP7667 in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15959:ChIP-chip of chinmo in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15958:ChIP-chip of bks in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15927:ChIP-chip of D in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15926:ChIP-chip of CNC in Drosophila embryos at E-0-12h time point | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15908:ChIP-chip of bab1 in Drosophila embryos at 0-12 hours of development | Drosophila melanogaster | ChIP-chip | 1 | Kevin White, University of Chicago | 2009-05-12 |
| GSE15064:OD00001_HCP3_N2_MXEMB | Caenorhabditis elegans | ChIP-chip | 9 | Jason Lieb, University of North Carolina at Chapel Hill | 2009-05-01 |
| GSE15899:small RNA from Drosophila melanogaster - Kc cell line | Drosophila melanogaster | RNA-Seq | 1 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2009-04-30 |
| GSE15898:small RNA from Drosophila melanogaster - adult bodies | Drosophila melanogaster | RNA-Seq | 3 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2009-04-30 |
| GSE15897:small RNA from Drosophila melanogaster - cell line Kc167 | Drosophila melanogaster | RNA-Seq | 2 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2009-04-30 |
| GSE15628:RNA polymerase occupancy at embryonic stage and starved L1 stage in pha-4 transgenic worms | Caenorhabditis elegans | ChIP-Seq | 6 | Michael Snyder, Yale University | 2009-04-11 |
| GSE15625:Identification of transcription factor MAB-5 binding sites | Caenorhabditis elegans | ChIP-Seq | 6 | Michael Snyder, Yale University | 2009-04-11 |
| GSE15567:Identification of transcription factor DAF-16 binding sites in C. elegans | Caenorhabditis elegans | ChIP-Seq | 4 | Michael Snyder, Yale University | 2009-04-11 |
| GSE15535:Genome-wide identification of the occupancy of RNA polymerase II (POL II) at L4/young adult stage in C. elegans | Caenorhabditis elegans | ChIP-Seq | 6 | Michael Snyder, Yale University | 2009-04-11 |
| GSE15596:modENCODE RNA-Seq of Drosophila cell lines Kc167, CME_W1_Cl.8+, S2-DRSC and ML-DmBG3-c2 | Drosophila melanogaster | RNA-seq | 8 | Brenton Gravely, University of Connecticut Health Systems | 2009-04-08 |
| GSE15501:Identification of transcription factor DPY-27 binding sites | Caenorhabditis elegans | ChIP-Seq | 4 | Michael Snyder, Yale University | 2009-04-03 |
| GSE15430:ChIP-chip of H3K27Ac in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 36 | Kevin White, University of Chicago | 2009-03-28 |
| GSE15427:ChIP-chip of CBP/p300 in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 63 | Kevin White, University of Chicago | 2009-03-28 |
| GSE15426:ChIP-chip of H3K9Ac in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 45 | Kevin White, University of Chicago | 2009-03-28 |
| GSE15425:ChIP-chip of H3K4me1 in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 45 | Kevin White, University of Chicago | 2009-03-28 |
| GSE15424:ChIP-chip of H3K4me3 in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 90 | Kevin White, University of Chicago | 2009-03-28 |
| GSE15423:ChIP-chip of H3K27me3 in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 99 | Kevin White, University of Chicago | 2009-03-28 |
| GSE15422:ChIP-chip of H3K9me3 in Drosophila at different time points of development | Drosophila melanogaster | ChIP-chip | 81 | Kevin White, University of Chicago | 2009-03-28 |
| GSE14849:small RNA from S2 cells (S2-NP) | Drosophila melanogaster | ChIP-chip | 1 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2009-03-12 |
| GSE14545:Identification of Transcription Factor Pha-4 Binding Regions | Caenorhabditis elegans | ChIP-Seq | 4 | Michael Snyder, Yale University | 2009-01-24 |
| GSE14488:Drosophila melanogaster S2-GMR cells, second biological replicate | Drosophila melanogaster | smallRNA sequencing | 1 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2009-01-28 |
| GSE13679:High-throughput sequencing of Drosophila melanogaster small RNAs from S2R+ cells | Drosophila melanogaster | smallRNA sequencing | 2 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2008-12-04 |
| GSE12840:Drosophila melanogaster late embryo, larval, pupal and adult head small RNA libraries | Drosophila melanogaster | smallRNA sequencing | 11 | Eric Lai, Memorial Sloan-Kettering Cancer Center | 2008-09-30 |