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ENCODE and modENCODE Data Listings



Overviews of the ENCODE and modENCODE projects.

This page summarizes ENCODE and modENCODE data that are available through the GEO repository.


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Production ENCODE data

Experiment Type No. Samples in experiment Lab, Organization Release date
GSE16552:Transcriptome of wild type N2 worms at embronic stage and starved L1 stage RNA-Seq 6 Michael Snyder, Yale University 2009-06-11
GSE15805:Duke-UNC-Texas-EBI ENCODE expression project Expression (exon array) 33 Gregory Crawford, Duke University 2009-04-23
GSE14863:ENCODE H1_ES cell phenotyping study Expression (exon array) 4 Scott Tenenbaum, University at Albany-State University of New York 2009-02-17
GSE14535:mRNP-mRNA Association Map (Tier I - G10, HuR, Imp, PABP) RIP-Chip 33 Scott Tenenbaum, University at Albany-State University of New York 2009-01-24
GSE13008:Genome-wide mapping of RNA Polymerase II binding sites ChIP-Seq 2 Michael Snyder, Yale University 2008-10-02
GSE12781:PolII transcription factor in Human HeLa S3 ChIP-Seq 2 Michael Snyder, Yale University 2008-09-16
GSE12782:STAT1 transcription factor in Human HeLa S3 ChIP-Seq 2 Michael Snyder, Yale University 2008-09-16
GSE12760:ENCODE cell phenotype retrospective study Expression (exon array) 41 Scott Tenenbaum, University at Albany-State University of New York 2008-09-16
GSE14022:Mapping Novel Chromatin Regions Using Sono-Seq ChIP-Seq 4 Michael Snyder, Yale University 2008-12-18



Pilot ENCODE data

Experiment Type Platform(s) No. Samples in experiment Supplementary files Release date
GSE8177:Me3K27 Histone H3 ChIP DNA from HeLa S3 cells DNase I sensitivity GPL2131:Nimblegen ENCODE Array 3 TXT 2007-06-22
GSE8073:Me3K27 Histone H3 ChIP DNA from HeLa S3 cells ChIP-chip GPL2131:Nimblegen ENCODE Array 3 GFF 2007-06-12
GSE7872:Ludwig Institute/UCSD ENCODE project June 2007 Release ChIP-chip GPL1454: RenLab ENCODE PCR tiling array

GPL4559:ENCODE NimbleGen hg17 tiling array

 51 GPR, PAIR 2007-06-01
GSE7467:ENCODE Transcript Mapping for Human HeLa Total RNA Expression GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 3 CEL 2007-04-06
GSE7437:ENCODE Transcript Mapping for Human HeLa Poly(A)+ RNA Expression GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 3 CEL 2007-04-06
GSE7372:NRSF ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2007-03-28
GSE7371:SMARCA6 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2007-03-28
GSE7370:Brg1 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] ChIP-chip GPL2313:Nimblegen ENCODE Array 3 None 2007-03-28
GSE7118:Ludwig Institute/UCSD ENCODE project March 2007 Release ChIP-chip GPL4559:ENCODE NimbleGen hg17 tiling array 124 GPR, PAIR 2007-03-01
GSE6900:ENCODE ChIP-chip for Rel A (p65) using polyclonal antibody (N-) on TNF-alpha-stimulated HeLaS3 Cells [unpublished] ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 3 None 2007-02-14
GSE6899:ENCODE ChIP-chip for Rel A (p65) using polyclonal antibody (C-20) on TNF-alpha-stimulated HeLaS3 Cells [unpublished] ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 3 None 2007-02-14
GSE6898:BAF155 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2007-02-14
GSE6897:Ini1 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2007-02-14
GSE6896:BAF170 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2007-02-14
GSE6895:Ini1 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] ChIP-chip GPL2131:Nimblegen ENCODE Array 4 None 2007-02-14
GSE6892:STAT1 (Interferon-alpha) ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 3 None 2007-02-14
GSE6624:Identification of genes directly regulated by the oncogene ZNF217 using ChIP-chip assays ChIP-chip GPL3980: UC Davis Human ENCODE array 11 TXT 2007-01-25
GSE6394:ENCODE ChIP-chip for RNA Polymerase II using monoclonal antibody (8WG16) on GM06990 Cells [unpublished] ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 3 None 2006-11-30
GSE6393:ENCODE ChIP-chip for Tetra-acetylated Histone H4 on GM06990 Cells [unpublished] ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 3 None 2006-11-30
GSE6392:ENCODE ChIP-chip for RNA Polymerase II using polyclonal antibody on GM06990 Cells [unpublished] ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 3 None 2006-11-30
GSE6391:ENCODE ChIP-chip for RNA Polymerase II using monoclonal antibody (8WG16) on HeLaS3 Cells [unpublished] ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2006-11-30
GSE6390:ENCODE ChIP-chip for RNA Polymerase II using polyclonal antibody (N-20) on HeLaS3 Cells [unpublished] ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2006-11-30
GSE6389:ENCODE ChIP-chip for Tetra-acetylated Histone H4 on HeLaS3 Cells [unpublished] ChIP-chip GPL2131:Nimblegen ENCODE Array 3 None 2006-09-01
GSE6375:E2F4 and Myc ChIP-chip perfomed on Nimblegen hg17 ENCODE arrays ChIP-chip GPL3514:ENCODE NimbleGen hg17_04252005 tiling array 12 None 2007-01-20
GSE6292:Ludwig Institute/UCSD ENCODE project ChIP-chip GPL1454:RenLab ENCODE PCR tiling array 24 None 2007-01-01
GSE6273:Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome ChIP-chip GPL1454:RenLab ENCODE PCR tiling array
GPL4558:ENCODE NimbleGen hg16 tiling array
GPL4559:ENCODE NimbleGen hg17 tiling array		 64 None 2007-01-01
GSE5559:Analysis of the vertebrate insulator protein CTCF binding sites in the human genome ChIP-chip GPL1454:RenLab ENCODE PCR tiling array
 		 3 None 2007-01-01
GSE5251:Improvements in sample preparation for ChIP-chip assays ChIP-chip GPL3980: UC Davis Human ENCODE array 6 None 2006-09-01
GSE5053:ENCODE Spike-in ChIP-chip Experiments ChIP-chip GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 42 CEL 2006-08-08
GSE4902:Suz12, EZH2, EED1, H3me3K27 binding sites in Ntera cells ChIP-chip GPL3792: Nimblegen Human ENCODE array 4 None 2006-06-06
GSE4886:FAIRE performed in human foreskin fibroblast cells FAIRE GPL3792: ENCODE NimbleGen hg17_04252005 tiling array 4 None 2006-09-01
GSE4355:E2F1 binding sites in MCF7 cells ENCODE ChIP-chip GPL3514: ENCODE NimbleGen hg17_04252005 tiling array
GPL3508:ENCODE NimbleGen hg16 tiling array		 3 None 2006-03-09
GSE4354:MYC binding sites in HeLa cells ChIP-chip GPL3514: ENCODE NimbleGen hg17_04252005 tiling array 3 None 2006-03-09
GSE4338:IgG control ChIP in HeLa cells ChIP-chip GPL3508:ENCODE NimbleGen hg16 tiling array 3 None 2006-03-09
GSE4337:POLII localization in HeLa cells ChIP-chip GPL3508:ENCODE NimbleGen hg16 tiling array 3 None 2006-03-09
GSE4334:DNaseI/Array GM06990 ChIP-chip GPL2131:Nimblegen ENCODE Array 1 None 2006-07-27
GSE4306:HeLa E2F1 ChIP-chip experiments ChIP-chip GPL3489:ENCODE NimbleGen hg17 tiling array 3 None 2006-02-28
GSE3663:ENCODE: PolyA+ RNA from cytosol of HeLa and GM06990 cells (NCBIv35) Expression GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 2 None 2005-12-13
GSE3662:ENCODE: PolyA+ RNA from retinoic acid stimulated HL-60 cells at 4 time points (NCBIv35) Expression GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 4 None 2005-12-13
GSE3661:ENCODE: p63ActD & p63_mActD ChIP of retinoic acid-stimulated ME180 cells at 0 h (NCBIv35) - strict analysis parameters ChIP-chip GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 2 None 2005-12-13
GSE3660:ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters ChIP-chip GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 4 None 2005-12-13
GSE3659:ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters ChIP-chip GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 4 None 2005-12-13
GSE3658:ENCODE: H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters ChIP-chip GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 4 None 2005-12-13
GSE3550:ENCODE: ChIP-chip for BAF170 on Human Hela S3 Cells ChIP-chip GPL2131:Nimblegen ENCODE Array 4 GFF 2005-11-04
GSE3549:ENCODE: ChIP-chip for BAF155 on Human Hela S3 Cells ChIP-chip GPL2131:Nimblegen ENCODE Array 4 GFF 2005-11-04
GSE3450:ENCODE: ChIP-chip for TAF II p250 on Human Hela S3 Cells ChIP-chip GPL2131:Nimblegen ENCODE Array 2 GFF 2005-10-19
GSE3449:ENCODE: ChIP-chip for FOS on Human Hela S3 Cells ChIP-chip GPL2131:Nimblegen ENCODE Array 3 GFF 2005-10-19
GSE3448:ENCODE: ChIP-chip for JUN on Human Hela S3 Cells ChIP-chip GPL2131:Nimblegen ENCODE Array 3 GFF 2005-10-19
GSE2813:ENCODE: (HG17) region-wide binding of a few antibodies in IFg treated and untreated HeLa cells using nimblegen array ChIP-chip GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab 12 None 2005-06-15
GSE2802:ENCODE: PolyA+ RNA from retinoic acid-stimulated HL60 cells at 4 timepoints (II) (NCBIv34) Expression GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2801:ENCODE: GWLA analysis of SUZ12 and triMeH3K27 binding in HeLa cells ChIP-chip GPL1454:RenLab ENCODE PCR tiling array 6 GPR 2005-06-12
GSE2800:ENCODE: PolyA+ RNA from cytosols of GM06990 and Hela cells (NCBIv34) Expression GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 2 CEL 2005-06-17
GSE2799:ENCODE: TFIIB-R ChIP-chip of retinoic acid-stimulated HL60 cells (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 1 CEL 2005-06-17
GSE2798:ENCODE: SIRT1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2797:ENCODE: RARecA ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2796:ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2795:ENCODE: PU1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2794:ENCODE: P300 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2793:ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2792:ENCODE: H3K27T ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2791:ENCODE: CTCF ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2790:ENCODE: CEBPe ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2789:ENCODE: Brg1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-06-17
GSE2735:ENCODE: two phosphorylation states of RNAP II ChIP-chip from HeLa cells ChIP-chip GPL2138:Affymetrix ENCODE Tiling Array - SENSE 18 CEL 2006-10-11
GSE2730:ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells ChIP-chip GPL1454:RenLab ENCODE PCR tiling array 51 GPR, TIFF 2005-06-03
GSE2720:ENCODE: Transcript mapping for human placental poly(A)+ RNA and human NB4 cell line total RNA Expression GPL2105:Human 36mer ENCODE region oligonucleotide tiling array (Yale design #1) 21 None 2005-06-04
GSE2714:ENCODE: ChIP-chip for STAT1 on Human Hela S3 Cells ChIP-chip GPL2131:Nimblegen ENCODE Array
GPL2132:Maskless Photolithographic 50mer ENCODE Array (FWD)
GPL2133:Maskless Photolithographic 36mer ENCODE Array (FWD)		 10 None 2005-05-27
GSE2679:ENCODE: Transcript Mapping for Total RNA from Human NB4 Cells untreated, treated with RA, and treated with TPA Expression GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 11 CEL 2005-05-19
GSE2678:ENCODE: Transcript Mapping for Human Neutrophil (PMN) Total RNA Expression GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 10 CEL 2005-05-19
GSE2671:ENCODE: Transcript Mapping for Human Placental Poly(A)+ RNA Expression GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 3 CEL 2005-05-18
GSE2142:ENCODE: RNAP transcription factor binding using Affymetrix genome tiling array (NCBIv34) ChIP-chip GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-01-31
GSE2141:ENCODE: PolyA+ RNA from retinoic acid-stimulated HL60 cells at 4 timepoints (I) (NCBIv34) Expression GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 4 CEL 2005-01-31
GSE2072:ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells ChIP-chip GPL1454:RenLab ENCODE PCR tiling array 6 TIFF 2004-12-16
GSE1778:ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines ChIP-chip GPL1454:RenLab ENCODE PCR tiling array 24 TIFF 2004-09-21



modENCODE data

Experiment Organism Type No. Samples in experiment Lab, Organization Release date
GSE16702:ChIP-chip of PolII in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 45 Kevin White, University of Chicago 2009-06-24
GSE15378:Drosophila OSS cell small RNA libraries Drosophila melanogaster RNA-Seq 4 Eric Lai, Memorial Sloan-Kettering Cancer Center 2009-06-09
GSE16330:Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep1day_TotalRNA_p200_338-340-342_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16329:Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep4day_TotalRNA_p200_356-358-360_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16328:Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep3day_TotalRNA_p200_350-352-354_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16327:Dm_OregonR_embryo_14-16h_poly-Ap_p200_130-131-132_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16326:Dm_OregonR_embryo_2-4h_poly-Ap_p200_127-128-129_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16325:Dm_ML-DmBG2-c2_TotalRNA_p200_470-472-474_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16324:Dm_Kc167_polyApRNA_p200_145-146-147_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16323:Dm_Kc167_nuclearRNA_p200_475-476-477_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16322:Dm_CME_W2_TotalRNA_p200_460-462-464_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16321:Dm_mbn2_TotalRNA_p200_044-046-048_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16320:Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_poly-Ap_p200_412-413-414_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16319:Dm_y[1]cn[1] bw[1] sp[1]_embryo_4-6h_TotalRNA_p200_224-226-228_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16318:Dm_y[1]cn[1] bw[1] sp[1]_embryo_2-4h_poly-Ap_p200_406-407-408_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16317:Dm_y[1]cn[1] bw[1] sp[1]_embryo_2-4h_TotalRNA_p200_218-220-222_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16316:Dm_y[1]cn[1] bw[1] sp[1]_embryo_22-24h_TotalRNA_p200_278-280-282_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16315:Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_TotalRNA_p200_272-274-276_38bp Drosophila melanogaster Transcript analysis (tiling) 2 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16314:Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_poly-Ap_p200_433-434-435_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16313:Dm_y[1]cn[1] bw[1] sp[1]_embryo_18-20h_poly-Ap_p200_430-431-432_38bp Drosophila melanogaster Transcript analysis (tiling) 2 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16312:Dm_y[1]cn[1] bw[1] sp[1]_embryo_18-20h_TotalRNA_p200_266-268-270_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16311:Dm_y[1]cn[1] bw[1] sp[1]_embryo_16-18h_poly-Ap_p200_427-428-429_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16310:Dm_y[1]cn[1] bw[1] sp[1]_embryo_16-18h_TotalRNA_p200_260-262-264_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16309:Dm_y[1]cn[1] bw[1] sp[1]_embryo_14-16h_poly-Ap_p200_424-425-426_38bp Drosophila melanogaster Transcript analysis (tiling) 2 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16308:Dm_y[1]cn[1] bw[1] sp[1]_embryo_14-16h_TotalRNA_p200_254-256-258_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16307:Dm_y[1]cn[1] bw[1] sp[1]_embryo_12-14h_poly-Ap_p200_421-422-423_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16306:Dm_y[1]cn[1] bw[1] sp[1]_embryo_12-14h_TotalRNA_p200_248-250-252_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16305:Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_poly-Ap_p200_418-419-420_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16304:Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_TotalRNA_p200_242-244-246_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16303:Dm_y[1]cn[1] bw[1] sp[1]_embryo_8-10h_poly-Ap_p200_415-416-417_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16302:Dm_y[1]cn[1] bw[1] sp[1]_embryo_8-10h_TotalRNA_p200_236-238-240_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16301:Dm_y[1]cn[1] bw[1] sp[1]_embryo_0-2h_poly-Ap_p200_403-404-405_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16300:Dm_y[1]cn[1] bw[1] sp[1]_embryo_0-2h_TotalRNA_p200_212-214-216_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16299:Dm_y[1]cn[1] bw[1] sp[1]_larval_L3_gut_stage1_TotalRNA_p200_440-442-444_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16298:Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_5dayPostEclosion_TotalRNA_p200_380-382-384_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16297:Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_1dayPostEclosion_TotalRNA_p200_368-370-372_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16296:Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_5dayPostEclosion_TotalRNA_p200_386-388-390_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16295:Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_1dayPostEclosion_TotalRNA_p200_374-376-378_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16294:Dm_y[1]cn[1] bw[1] sp[1]_prepupa_WhitePrePupae_TotalRNA_p200_326-328-330_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16293:Dm_y[1]cn[1] bw[1] sp[1]_larval_L2_TotalRNA_p200_290-292-294_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16292:Dm_y[1]cn[1] bw[1] sp[1]_larval_L1_TotalRNA_p200_284-286-288_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16291:Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_TotalRNA_p200_230-232-234_38bp Drosophila melanogaster Transcript analysis (tiling) 2 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16290:Dm_DmD16-c3_TotalRNA_p200_138-136-138_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16289:Dm_Sg4_TotalRNA_p200_200-202-204_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16288:Dm_S3_TotalRNA_p200_104-106-108_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16287:Dm_S2R+_TotalRNA_p200_020-022-024_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16286:Dm_S2-DRSC_TotalRNA_p200_014-016-018_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16285:Dm_S1_TotalRNA_p200_026-028-030_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16284:Dm_DmD9_TotalRNA_p200_072-074-076_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16283:Dm_DmD8_TotalRNA_p200_206-208-210_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16282:Dm_DmD4-c1_TotalRNA_p200_140-142-144_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16281:Dm_DmD32_TotalRNA_p200_164-166-168_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16280:Dm_DmD21_TotalRNA_p200_050-052-054_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16279:Dm_DmD20-c5_TotalRNA_p200_188-190-192_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16278:Dm_DmD20-c2_TotalRNA_p200_182-184-186_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16277:Dm_DmD17-c3_TotalRNA_p200_194-196-198_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16276:Dm_ML-DmD11_TotalRNA_p200_170-172-174_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16275:Dm_ML-DmBG3-c2_TotalRNA_p200_122-124-126_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16274:Dm_ML-DmBG1-c2_TotalRNA_p200_116-118-120_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16273:Dm_Kc167_TotalRNA_p200_002-004-006_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16272:Dm_GM2_TotalRNA_p200_008-010-012_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16271:Dm_CME-W1-Cl.8p_TotalRNA_p200_060-062-064_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16270:Dm_CME-L1_TotalRNA_p200_086-088-090_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16269:Dm_1182-4H_TotalRNA_p200_038-040-042_38bp Drosophila melanogaster Transcript analysis (tiling) 3 Susan Celniker, Lawrence Berkeley National Laboratory 2009-06-02
GSE16268:JL00004_MIX1_N2_MXEMB Drosophila melanogaster ChIP-chip 3 Jason Lieb, University of North Carolina at Chapel Hill 2009-06-02
GSE16245:Genomewide analysis of Insulator protein binding sites in Drosophila embryos at E0-12 Drosophila melanogaster ChIP-chip 16 Kevin White, University of Chicago 2009-05-29
GSE16133:Strome SGF3165_FLAG_MES4FLAG_EEMB Caenorhabditis elegans ChIP-chip 9 Jason Lieb, University of North Carolina at Chapel Hill 2009-05-19
GSE16132:JL00003_DPY26_N2_MXEMB Caenorhabditis elegans ChIP-chip 3 Jason Lieb, University of North Carolina at Chapel Hill 2009-05-19
GSE16055:ChIP-chip of gsbnpurif in Drosophila embryos at E7-24h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-13
GSE16013:Genome-wide maps of chromatin state in staged Drosophila embryos Drosophila melanogaster ChIP-Seq 58 Kevin White, University of Chicago 2009-05-12
GSE15997:ChIP-chip of brm in Drosophila embryos at pupae time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15996:ChIP-chip of snr1 in Drosohila embryos at Pupae time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15995:ChIP-chip of end300 in Drosophila embryos at E7-24h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15994:ChIP-chip of UBX7701 in Drosophila embryos at E3-8h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15993:ChIP-chip of UBX2 in Drosophila embryos at E3-8h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15992:ChIP-chip of UBX1 in Drosophila embryos at E3-8h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15990:ChIP-chip of GROAviva in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15989:ChIP-chip of ZFH1 in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15988:ChIP-chip of UBX7701 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15987:ChIP-chip of TTK in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15986:ChIP-chip of Stat92E in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15985:ChIP-chip of RUN7659 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15984:ChIP-chip of KN in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15983:ChIP-chip of INVGFP in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15982:ChIP-chip of INV7657 in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15981:ChIP-chip of H3K9me3 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15980:ChIP-chip of H3K4me3 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15979:ChIP-chip of H3K36me3 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15978:ChIP-chip of Gro3 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15965:ChIP-chip of FTZ-F1 in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15964:ChIP-chip of ENserum in Drosophila embryos at E0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15963:ChIP-chip of dll in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15961:ChIP-chip of dCtBP7667 in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15959:ChIP-chip of chinmo in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15958:ChIP-chip of bks in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15927:ChIP-chip of D in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15926:ChIP-chip of CNC in Drosophila embryos at E-0-12h time point Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15908:ChIP-chip of bab1 in Drosophila embryos at 0-12 hours of development Drosophila melanogaster ChIP-chip 1 Kevin White, University of Chicago 2009-05-12
GSE15064:OD00001_HCP3_N2_MXEMB Caenorhabditis elegans ChIP-chip 9 Jason Lieb, University of North Carolina at Chapel Hill 2009-05-01
GSE15899:small RNA from Drosophila melanogaster - Kc cell line Drosophila melanogaster RNA-Seq 1 Eric Lai, Memorial Sloan-Kettering Cancer Center 2009-04-30
GSE15898:small RNA from Drosophila melanogaster - adult bodies Drosophila melanogaster RNA-Seq 3 Eric Lai, Memorial Sloan-Kettering Cancer Center 2009-04-30
GSE15897:small RNA from Drosophila melanogaster - cell line Kc167 Drosophila melanogaster RNA-Seq 2 Eric Lai, Memorial Sloan-Kettering Cancer Center 2009-04-30
GSE15628:RNA polymerase occupancy at embryonic stage and starved L1 stage in pha-4 transgenic worms Caenorhabditis elegans ChIP-Seq 6 Michael Snyder, Yale University 2009-04-11
GSE15625:Identification of transcription factor MAB-5 binding sites Caenorhabditis elegans ChIP-Seq 6 Michael Snyder, Yale University 2009-04-11
GSE15567:Identification of transcription factor DAF-16 binding sites in C. elegans Caenorhabditis elegans ChIP-Seq 4 Michael Snyder, Yale University 2009-04-11
GSE15535:Genome-wide identification of the occupancy of RNA polymerase II (POL II) at L4/young adult stage in C. elegans Caenorhabditis elegans ChIP-Seq 6 Michael Snyder, Yale University 2009-04-11
GSE15596:modENCODE RNA-Seq of Drosophila cell lines Kc167, CME_W1_Cl.8+, S2-DRSC and ML-DmBG3-c2 Drosophila melanogaster RNA-seq 8 Brenton Gravely, University of Connecticut Health Systems 2009-04-08
GSE15501:Identification of transcription factor DPY-27 binding sites Caenorhabditis elegans ChIP-Seq 4 Michael Snyder, Yale University 2009-04-03
GSE15430:ChIP-chip of H3K27Ac in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 36 Kevin White, University of Chicago 2009-03-28
GSE15427:ChIP-chip of CBP/p300 in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 63 Kevin White, University of Chicago 2009-03-28
GSE15426:ChIP-chip of H3K9Ac in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 45 Kevin White, University of Chicago 2009-03-28
GSE15425:ChIP-chip of H3K4me1 in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 45 Kevin White, University of Chicago 2009-03-28
GSE15424:ChIP-chip of H3K4me3 in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 90 Kevin White, University of Chicago 2009-03-28
GSE15423:ChIP-chip of H3K27me3 in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 99 Kevin White, University of Chicago 2009-03-28
GSE15422:ChIP-chip of H3K9me3 in Drosophila at different time points of development Drosophila melanogaster ChIP-chip 81 Kevin White, University of Chicago 2009-03-28
GSE14849:small RNA from S2 cells (S2-NP) Drosophila melanogaster ChIP-chip 1 Eric Lai, Memorial Sloan-Kettering Cancer Center 2009-03-12
GSE14545:Identification of Transcription Factor Pha-4 Binding Regions Caenorhabditis elegans ChIP-Seq 4 Michael Snyder, Yale University 2009-01-24
GSE14488:Drosophila melanogaster S2-GMR cells, second biological replicate Drosophila melanogaster smallRNA sequencing 1 Eric Lai, Memorial Sloan-Kettering Cancer Center 2009-01-28
GSE13679:High-throughput sequencing of Drosophila melanogaster small RNAs from S2R+ cells Drosophila melanogaster smallRNA sequencing 2 Eric Lai, Memorial Sloan-Kettering Cancer Center 2008-12-04
GSE12840:Drosophila melanogaster late embryo, larval, pupal and adult head small RNA libraries Drosophila melanogaster smallRNA sequencing 11 Eric Lai, Memorial Sloan-Kettering Cancer Center 2008-09-30



 

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