|
Experiment |
Type |
Platform(s) |
No. Samples in experiment |
Supplementary files |
Release date |
| GSE8177:Me3K27 Histone H3 ChIP DNA from HeLa S3 cells |
DNase I sensitivity | GPL2131:Nimblegen ENCODE Array | 3 |
TXT | 2007-06-22 |
| GSE8073:Me3K27 Histone H3 ChIP DNA from HeLa S3 cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | GFF | 2007-06-12 |
| GSE7872:Ludwig Institute/UCSD ENCODE project June 2007 Release | ChIP-chip | GPL1454: RenLab ENCODE PCR tiling array GPL4559:ENCODE NimbleGen hg17 tiling array | 51 | GPR, PAIR | 2007-06-01 |
| GSE7467:ENCODE Transcript Mapping for Human HeLa Total RNA | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 3 | CEL | 2007-04-06 |
| GSE7437:ENCODE Transcript Mapping for Human HeLa Poly(A)+ RNA | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 3 | CEL | 2007-04-06 |
| GSE7372:NRSF ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-03-28 |
| GSE7371:SMARCA6 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-03-28 |
| GSE7370:Brg1 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2313:Nimblegen ENCODE Array | 3 | None | 2007-03-28 |
| GSE7118:Ludwig Institute/UCSD ENCODE project March 2007 Release | ChIP-chip | GPL4559:ENCODE NimbleGen hg17 tiling array | 124 | GPR, PAIR | 2007-03-01 |
| GSE6900:ENCODE ChIP-chip for Rel A (p65) using polyclonal antibody (N-) on TNF-alpha-stimulated HeLaS3 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2007-02-14 |
| GSE6899:ENCODE ChIP-chip for Rel A (p65) using polyclonal antibody (C-20) on TNF-alpha-stimulated HeLaS3 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2007-02-14 |
| GSE6898:BAF155 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-02-14 |
| GSE6897:Ini1 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-02-14 |
| GSE6896:BAF170 ChIP-ChIP from K562 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2007-02-14 |
| GSE6895:Ini1 ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array; [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 4 | None | 2007-02-14 |
| GSE6892:STAT1 (Interferon-alpha) ChIP-ChIP from HeLaS3 Cells using the NimbleGen ENCODE Array | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2007-02-14 |
| GSE6624:Identification of genes directly regulated by the oncogene ZNF217 using ChIP-chip assays | ChIP-chip | GPL3980: UC Davis Human ENCODE array | 11 | TXT | 2007-01-25 |
| GSE6394:ENCODE ChIP-chip for RNA Polymerase II using monoclonal antibody (8WG16) on GM06990 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2006-11-30 |
| GSE6393:ENCODE ChIP-chip for Tetra-acetylated Histone H4 on GM06990 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2006-11-30 |
| GSE6392:ENCODE ChIP-chip for RNA Polymerase II using polyclonal antibody on GM06990 Cells [unpublished] | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 3 | None | 2006-11-30 |
| GSE6391:ENCODE ChIP-chip for RNA Polymerase II using monoclonal antibody (8WG16) on HeLaS3 Cells [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2006-11-30 |
| GSE6390:ENCODE ChIP-chip for RNA Polymerase II using polyclonal antibody (N-20) on HeLaS3 Cells [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2006-11-30 |
| GSE6389:ENCODE ChIP-chip for Tetra-acetylated Histone H4 on HeLaS3 Cells [unpublished] | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | None | 2006-09-01 |
| GSE6375:E2F4 and Myc ChIP-chip perfomed on Nimblegen hg17 ENCODE arrays | ChIP-chip | GPL3514:ENCODE NimbleGen hg17_04252005 tiling array | 12 | None | 2007-01-20 |
| GSE6292:Ludwig Institute/UCSD ENCODE project | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 24 | None | 2007-01-01 |
| GSE6273:Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array
GPL4558:ENCODE NimbleGen hg16 tiling array
GPL4559:ENCODE NimbleGen hg17 tiling array | 64 | None | 2007-01-01 |
| GSE5559:Analysis of the vertebrate insulator protein CTCF binding sites in the human genome | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array
|
3 | None | 2007-01-01 |
| GSE5251:Improvements in sample preparation for ChIP-chip assays | ChIP-chip | GPL3980: UC Davis Human ENCODE array | 6 | None | 2006-09-01 |
| GSE5053:ENCODE Spike-in ChIP-chip Experiments | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 42 | CEL | 2006-08-08 |
| GSE4902:Suz12, EZH2, EED1, H3me3K27 binding sites in Ntera cells | ChIP-chip | GPL3792: Nimblegen Human ENCODE array | 4 | None | 2006-06-06 |
| GSE4886:FAIRE performed in human foreskin fibroblast cells | FAIRE | GPL3792: ENCODE NimbleGen hg17_04252005 tiling array | 4 | None | 2006-09-01 |
| GSE4355:E2F1 binding sites in MCF7 cells ENCODE | ChIP-chip | GPL3514: ENCODE NimbleGen hg17_04252005 tiling array
GPL3508:ENCODE NimbleGen hg16 tiling array | 3 | None | 2006-03-09 |
| GSE4354:MYC binding sites in HeLa cells | ChIP-chip | GPL3514: ENCODE NimbleGen hg17_04252005 tiling array | 3 | None | 2006-03-09 |
| GSE4338:IgG control ChIP in HeLa cells | ChIP-chip | GPL3508:ENCODE NimbleGen hg16 tiling array | 3 | None | 2006-03-09 |
| GSE4337:POLII localization in HeLa cells | ChIP-chip | GPL3508:ENCODE NimbleGen hg16 tiling array | 3 | None | 2006-03-09 |
| GSE4334:DNaseI/Array GM06990 | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 1 | None | 2006-07-27 |
| GSE4306:HeLa E2F1 ChIP-chip experiments | ChIP-chip | GPL3489:ENCODE NimbleGen hg17 tiling array | 3 | None | 2006-02-28 |
| GSE3663:ENCODE: PolyA+ RNA from cytosol of HeLa and GM06990 cells (NCBIv35) | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 2 | None | 2005-12-13 |
| GSE3662:ENCODE: PolyA+ RNA from retinoic acid stimulated HL-60 cells at 4 time points (NCBIv35) | Expression | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3661:ENCODE: p63ActD & p63_mActD ChIP of retinoic acid-stimulated ME180 cells at 0 h (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 2 | None | 2005-12-13 |
| GSE3660:ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3659:ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3658:ENCODE: H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters | ChIP-chip | GPL3111:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 | 4 | None | 2005-12-13 |
| GSE3550:ENCODE: ChIP-chip for BAF170 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 4 | GFF | 2005-11-04 |
| GSE3549:ENCODE: ChIP-chip for BAF155 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 4 | GFF | 2005-11-04 |
| GSE3450:ENCODE: ChIP-chip for TAF II p250 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 2 | GFF | 2005-10-19 |
| GSE3449:ENCODE: ChIP-chip for FOS on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | GFF | 2005-10-19 |
| GSE3448:ENCODE: ChIP-chip for JUN on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array | 3 | GFF | 2005-10-19 |
| GSE2813:ENCODE: (HG17) region-wide binding of a few antibodies in IFg treated and untreated HeLa cells using nimblegen array | ChIP-chip | GPL2533:Nimblegen ENCODE tiling array (HG17) with 50mer probe at 38bp interval for RenLab | 12 | None | 2005-06-15 |
| GSE2802:ENCODE: PolyA+ RNA from retinoic acid-stimulated HL60 cells at 4 timepoints (II) (NCBIv34) | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2801:ENCODE: GWLA analysis of SUZ12 and triMeH3K27 binding in HeLa cells | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 6 | GPR | 2005-06-12 |
| GSE2800:ENCODE: PolyA+ RNA from cytosols of GM06990 and Hela cells (NCBIv34) | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 2 | CEL | 2005-06-17 |
| GSE2799:ENCODE: TFIIB-R ChIP-chip of retinoic acid-stimulated HL60 cells (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 1 | CEL | 2005-06-17 |
| GSE2798:ENCODE: SIRT1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2797:ENCODE: RARecA ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2796:ENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2795:ENCODE: PU1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2794:ENCODE: P300 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2793:ENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2792:ENCODE: H3K27T ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2791:ENCODE: CTCF ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2790:ENCODE: CEBPe ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2789:ENCODE: Brg1 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-06-17 |
| GSE2735:ENCODE: two phosphorylation states of RNAP II ChIP-chip from HeLa cells | ChIP-chip | GPL2138:Affymetrix ENCODE Tiling Array - SENSE | 18 | CEL | 2006-10-11 |
| GSE2730:ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 51 | GPR, TIFF | 2005-06-03 |
| GSE2720:ENCODE: Transcript mapping for human placental poly(A)+ RNA and human NB4 cell line total RNA | Expression | GPL2105:Human 36mer ENCODE region oligonucleotide tiling array (Yale design #1) | 21 | None | 2005-06-04 |
| GSE2714:ENCODE: ChIP-chip for STAT1 on Human Hela S3 Cells | ChIP-chip | GPL2131:Nimblegen ENCODE Array
GPL2132:Maskless Photolithographic 50mer ENCODE Array (FWD)
GPL2133:Maskless Photolithographic 36mer ENCODE Array (FWD) | 10 | None | 2005-05-27 |
| GSE2679:ENCODE: Transcript Mapping for Total RNA from Human NB4 Cells untreated, treated with RA, and treated with TPA | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 11 | CEL | 2005-05-19 |
| GSE2678:ENCODE: Transcript Mapping for Human Neutrophil (PMN) Total RNA | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 10 | CEL | 2005-05-19 |
| GSE2671:ENCODE: Transcript Mapping for Human Placental Poly(A)+ RNA | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 3 | CEL | 2005-05-18 |
| GSE2142:ENCODE: RNAP transcription factor binding using Affymetrix genome tiling array (NCBIv34) | ChIP-chip | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-01-31 |
| GSE2141:ENCODE: PolyA+ RNA from retinoic acid-stimulated HL60 cells at 4 timepoints (I) (NCBIv34) | Expression | GPL1789:Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 | 4 | CEL | 2005-01-31 |
| GSE2072:ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 6 | TIFF | 2004-12-16 |
| GSE1778:ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines | ChIP-chip | GPL1454:RenLab ENCODE PCR tiling array | 24 | TIFF | 2004-09-21 |
