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Rat Gene and RefSeq Statistics
Additional statistics are available from:
Definition of reported columns:- category: the type of object being counted (Genes, RefSeq accessions, PubMed IDs etc)
- curated RefSeq: the pool of RefSeq records that are available for manual curation.
- model RefSeq: the pool of RefSeq records that are a product of NCBI's computational genome annotation pipeline and which are not available for manual curation.
- total: the count of objects, per status
- status: the type of Gene or RefSeq
- standard: a Gene that is defined based on data from public sources such as GenBank or RGD. Or, a Gene that was predicted by NCBI's computational genome annotation process and was later determined to have sufficiently strong homology support to track as valid.
- computed: a Gene record that is defined by NCBI's computational genome annotation pipeline.
Last updated: April 25, 2008
category total status ---------------------------------------------------------------- ----------- -------- GeneIDs, total 19245 standard GeneIDs, total 18556 computed GeneIDs, with official nomenclature 17356 standard GeneIDs, with official nomenclature 8646 computed GeneIDs, with interim nomenclature 1715 standard GeneIDs, with interim nomenclature 9621 computed GeneIDs, protein-coding 17141 standard GeneIDs, protein-coding 11138 computed GeneIDs, with associated phenotype 926 standard GeneIDs, associated with sequence 16993 standard GeneIDs, with curated RefSeqs 15244 standard GeneIDs, with curated protein-coding RefSeqs 14300 standard GeneIDs, with Swiss-Prot accessions 6761 standard GeneIDs, with TrEMBL accessions 5588 standard RefSeqs, curated protein-coding 14571 standard RefSeqs, curated ncRNA 16 standard RefSeqs, curated pseudogenes 928 standard PubMed IDs, total 35201 standard PubMed IDs, total 83 computed GeneIDs, with PubMed IDs 13869 standard GeneIDs, with PubMed IDs 62 computed GeneIDs, with model RefSeqs 1820 standard GeneIDs, with model RefSeqs 11489 computed GeneIDs, with model protein-coding RefSeqs 1762 standard GeneIDs, with model protein-coding RefSeqs 8885 computed RefSeqs, model non-coding (all assemblies) 108 standard RefSeqs, model non-coding (all assemblies) 3875 computed RefSeqs, model protein-coding (all assemblies) 3648 standard RefSeqs, model protein-coding (all assemblies) 11743 computed GeneIDs with model RefSeqs on the reference assembly 1718 standard GeneIDs, with model RefSeqs on a non-reference assembly 1605 standard GeneIDs, unique to reference assembly 792 standard GeneIDs, unique to reference assembly 4982 computed GeneIDs, unique to any alternate assembly 343 standard GeneIDs, unique to any alternate assembly 4231 computed GeneIDs with sequence, not on any build 440 standard GeneIDs, with GeneRIFs 4053 standard GeneIDs, with GeneRIFs 41 computed GeneIDs, in HomoloGene groups 14852 standard GeneIDs, in HomoloGene groups 4194 computed GeneIDs in HomoloGene clusters including human/mouse/rat 12643 standard GeneIDs in HomoloGene clusters including human/mouse/rat 2187 computed GeneIDs in HomoloGene clusters including mouse/rat only 803 standard GeneIDs in HomoloGene clusters including mouse/rat only 513 computed GeneIDs associated with markers 11473 standard GeneIDs associated with markers 3877 computed
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