NCBI

Find a TPF

Join Legend: Click on the colored ball in the 'join' column to see alignment details.

tpf view for chr Y (reference)
acc name ctg center status join align length gaps % id comments
GAP TELOMERE 10000  
GAP TYPE-3    
GAP PAR BX640545 AC006209
AC006040.3 RP11-400O10 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC074181.1 RP11-515L2 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC006157.2 RP11-414C23 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC006032.2 RP11-115E20 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC006152.4 RP11-4N7 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC011305.2 RP11-390E9 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC009479.4 RP11-278L6 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC019058.4 RP11-125B15 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC024038.6 RP11-349O6 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC012078.3 RP11-539O22 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010094.5 RP11-336O5 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010737.4 RP11-439L24 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010084.3 RP11-145J12 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010905.3 RP11-560B8 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010106.2 RP11-575J5 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC024703.5 RP11-51N20 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC012077.4 RP11-524G14 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010142.4 RP11-240N18 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC019060.5 RP11-125K5 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC023423.5 RP11-430C23 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010722.2 RP11-122L9 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010685.3 RP11-465A8 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010129.3 RP11-59N9 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC012067.2 RP11-192N14 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC012667.2 RP11-357C22 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010081.4 RP11-65E7 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010874.3 RP11-118K2 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010977.4 RP11-362J16 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC016681.2 RP11-62H15 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010140.3 RP11-218E11 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC006335.2 RP11-492C2 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010154.3 RP11-573O23 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010144.4 RP11-309M4 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010728.4 RP11-258E22 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC013412.3 RP11-507A3 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC011297.3 RP11-115H13 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC012068.5 RP11-196J6 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010104.3 RP11-540C18 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010143.3 RP11-301O17 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC007284.4 RP11-558K21 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC007247.5 RP11-305H21 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC007274.3 RP11-105L10 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC007275.4 RP11-109F19 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010678.4 RP11-108F14 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC010902.4 RP11-549J7 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC016749.4 RP11-504E20 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC051663.9 RP11-475P15 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC025731.12 RP11-48H21 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC016991.5 RP11-17E15 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC064829.6 RP11-375P13 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC009491.3 RP11-418M8 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC007967.3 RP11-373F14 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC068719.3 RP11-403P11 HschrY_ctg7 WUGSC fin joingreen 200 0 100  
AC079126.3 CTB-45E23 HschrY_ctg7 WUGSC fin
GAP TYPE-3    
AC079125.4 RP11-1188O8 HschrY_ctg8 WUGSC fin joingreen 200 0 100  
AC009952.4 RP11-175I4 HschrY_ctg8 WUGSC fin joingreen 200 0 100  
AC025732.9 RP11-116J19 HschrY_ctg8 WUGSC fin joingreen 200 0 100  
AC006158.6 RP11-441G8 HschrY_ctg8 WUGSC fin
GAP TYPE-3    
AC006156.5 RP11-344D2 HschrY_ctg9 WUGSC fin joingreen 200 0 100  
AC025819.7 RP11-370N2 HschrY_ctg9 WUGSC fin joingreen 200 0 100  
AC017019.3 RP11-182H20 HschrY_ctg9 WUGSC fin joingreen 200 0 100  
AC010891.2 RP11-453C1 HschrY_ctg9 WUGSC fin joingreen 200 0 100  
AC006986.3 RP11-155J5 HschrY_ctg9 WUGSC fin joingreen 200 0 100  
AC006987.2 RP11-160K17 HschrY_ctg9 WUGSC fin joingreen 200 0 100  
AC010970.3 RP11-108I14 HschrY_ctg9 WUGSC fin
GAP CENTROMERE 3000000  
AC069323.5 RP11-1126J10 HschrY_ctg10 WUGSC fin
GAP TYPE-3    
AC140113.3 RP1-85D24 HschrY_ctg10_1 WUGSC fin joingreen 71055 10 99.980 simple sequence in gap
AC134878.3 RP11-131M6 HschrY_ctg10_1 WUGSC fin joingreen 33248 0 100  
AC134882.2 RP11-886I11 HschrY_ctg10_1 WUGSC fin joingreen 10705 0 100  
AC134879.3 RP11-295P22 HschrY_ctg10_1 WUGSC fin
GAP TYPE-3    
AC011293.5 RP11-75F5 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC012502.3 RP11-461H6 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC011302.3 RP11-333E9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC013735.5 RP11-558M10 HschrY_ctg10_2 WUGSC fin joingreen 40020 0 99.980  
AC004772.3 CTB-144J1 HschrY_ctg10_2 WIBR fin joingreen 2000 0 100  
AC005942.2 CTC-298B15 HschrY_ctg10_2 WIBR fin joingreen 2000 0 100  
AC002992.1 ? HschrY_ctg10_2 WIBR fin joinyellow 29202 0 100 half-dovetail of >0bp and <=50bp
AC004617.3 ? HschrY_ctg10_2 WIBR fin joinblack 14819 1 100 initial certificate; >0 gap of 500bp or more
AC004810.1 CTB-69H8 HschrY_ctg10_2 WIBR fin joingreen 2000 0 100  
AC002531.1 ? HschrY_ctg10_2 WIBR fin joingreen 44194 1 100 simple sequence in gap
AC004474.1 ? HschrY_ctg10_2 WIBR fin joingreen 2000 0 100  
AC006565.4 CTC-484O7 HschrY_ctg10_2 WIBR fin joingreen 8000 0 100  
AC005820.1 CTC-494G17 HschrY_ctg10_2 WIBR fin joingreen 64816 7 99.998 simple sequence in gap
AC010877.3 RP11-218F6 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006376.2 RP11-386L3 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007004.3 RP11-521D3 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006383.2 RP11-498H20 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006371.2 RP11-304C24 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006370.2 RP11-292P9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC018677.3 RP11-264A13 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010720.4 RP11-53K10 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010723.3 RP11-139C10 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC019191.4 RP11-312H22 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010726.4 RP11-224C16 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010979.3 RP11-384N21 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010879.2 RP11-235I1 HschrY_ctg10_2 WUGSC fin joingreen 2000 0 100  
AC011903.4 RP11-568F18 HschrY_ctg10_2 WUGSC fin joingreen 2000 0 100  
AC017032.3 RP11-292E8 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006989.3 RP11-225B4 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC011289.4 RP11-59K8 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010972.3 RP11-133D3 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007007.3 RP11-551F5 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006998.3 RP11-458M9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006382.3 RP11-494J4 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006462.3 RP11-389B19 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006336.4 RP11-508K5 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC016671.3 RP11-12J24 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC017020.4 RP11-185K15 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC011749.2 RP11-455E3 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC053516.10 RP11-442J5 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010135.3 RP11-128D13 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010128.3 RP11-15H4 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC011751.2 RP11-478I15 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC016678.4 RP11-55O11 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC015979.4 RP11-538M13 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007034.4 RP11-99M1 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007043.3 RP11-507E21 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC006999.2 RP11-462A19 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007042.3 RP11-399H17 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC091329.3 RP11-568H21 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007972.4 RP11-537C24 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC015978.4 RP11-529I21 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC068704.4 RP11-434F12 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007742.4 RP11-357E16 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC095381.1 ? HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009976.4 RP11-509B6 HschrY_ctg10_2 WUGSC fin
GAP TYPE-2    
AC095380.1 ? HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC024183.4 RP11-268K13 HschrY_ctg10_2 WUGSC fin joinpurple 6 0 N/A approved certificate; no overlap present
AC007241.3 RP11-157F24 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC069130.6 RP11-468D10 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC073962.5 RP11-945E12 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC068541.7 RP11-243P9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC022486.4 RP11-569J3 HschrY_ctg10_2 WUGSC fin joinyellow 200 0 100 alignment length < 2000
AC007379.2 RP11-143C1 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009235.4 RP11-392F24 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007244.2 RP11-207L19 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC021210.4 RP11-389F23 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010133.4 RP11-118E9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC012062.4 RP11-80E19 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010137.3 RP11-169D1 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009977.4 RP11-576C2 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010889.3 RP11-424G14 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010151.3 RP11-508P10 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009233.3 RP11-356K22 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC079157.3 RP11-1285C3 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC079261.2 RP11-1325K3 HschrY_ctg10_2 WUGSC fin
GAP type-2    
AC079156.4 RP11-943F15 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC024250.6 RP11-684N2 HschrY_ctg10_2 WUGSC fin joinblack 0 0 N/A initial certificate; no overlap present
AC009240.6 RP11-489O13 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC011745.4 RP11-329C15 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007678.3 RP11-256K9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009494.2 RP11-450B24 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC026061.8 RP11-223K9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009489.3 RP11-339J4 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC007876.2 RP11-65G9 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC009239.3 RP11-470K20 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010086.4 RP11-209I11 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC010141.2 RP11-220O2 HschrY_ctg10_2 WUGSC fin joingreen 200 0 100  
AC021107.3 RP11-178M5 HschrY_ctg10_2 WUGSC fin
GAP TYPE-3    
AC078938.3 CTC-480L15 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC024236.5 RP11-400I17 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC007322.4 RP11-553C13 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC007359.3 RP11-66M18 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC023342.3 RP11-95B23 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC025227.6 RP11-109G18 HschrY_ctg11 WUGSC fin joinyellow 200 0 100 alignment length < 2000
AC007320.3 RP11-477B5 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC008175.2 RP11-427G18 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC016694.2 RP11-123G1 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC010080.2 RP11-5C5 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC016911.6 RP11-473E1 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006366.4 RP11-86G22 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC010088.4 RP11-289L7 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC053490.2 RP11-140H23 HschrY_ctg11 WUGSC fin joinyellow 200 0 100 alignment length < 2000
AC007039.6 RP11-263A15 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006983.4 RP11-70G12 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC009947.2 RP11-39P20 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC016707.2 RP11-221K4 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC016752.2 RP11-506M9 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC025246.6 RP11-589P14 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC073649.3 RP11-823D8 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC073893.4 RP11-978G18 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC068601.8 RP11-1067I16 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC023274.2 RP11-307L15 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC012005.4 RP11-533E23 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC013465.4 RP11-424J12 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC016698.3 RP11-160O2 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC010153.3 RP11-535I13 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC025735.4 RP11-214M24 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC010089.4 RP11-290O3 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006982.3 RP11-26D12 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006338.6 RP11-539D10 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC016728.4 RP11-363G6 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006386.4 RP11-566H16 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006328.5 RP11-102O5 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC007562.4 RP11-497C14 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC010682.3 RP11-251M8 HschrY_ctg11 WUGSC fin joinpurple 6 0 N/A approved certificate; no overlap present
AC017005.7 RP11-100J21 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC007965.3 RP11-245K4 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC006991.3 RP11-270H4 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC024067.4 RP11-487K20 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC013734.4 RP11-557B9 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC019099.6 RP11-428D10 HschrY_ctg11 WUGSC fin joingreen 200 0 100  
AC073880.5 RP11-1136L22 HschrY_ctg11 WUGSC fin
GAP HETEROCHROMATIN 30000000  
AC068123.5 RP11-242E13 HschrY_ctg11_1 WUGSC fin
GAP TYPE-3    
AC025226.4 RP11-57J19 HschrY_ctg12 WUGSC fin
GAP PAR AJ271735 AJ271736
GAP TELOMERE 10000