NCBI

Find a TPF

Join Legend: Click on the colored ball in the 'join' column to see alignment details.

Join view for chr 22 (reference)
acc1 clone1 clone1 status clone1 center acc2 clone2 clone2 status clone2 center align len perc. id gaps join status comments
AP000522.1 LA16c-4G1 unk Keio AP000523.1 LA16c-60H5 unk Keio 2272 100 0 green  
AP000523.1 LA16c-60H5 unk Keio AP000524.1 LA16c-70D1 unk Keio 473 100 0 yellow alignment length < 2000
AP000524.1 LA16c-70D1 unk Keio AP000525.1 ? unk Keio 845 99.763 0 yellow alignment length < 2000
AP000525.1 ? unk Keio AP000526.1 ? unk Keio 22649 100 0 green  
AP000526.1 ? unk Keio AP000527.1 LA16c-83F12 unk Keio 7213 99.889 0 green  
AP000527.1 LA16c-83F12 unk Keio AP000528.1 LA16c-91G6 unk Keio 6257 99.888 1 red >0 gap of 50bp or more, not simple sequence
AP000528.1 LA16c-91G6 unk Keio AP000529.1 LA16c-3G11 unk Keio 6549 100 0 green  
AP000529.1 LA16c-3G11 unk Keio CR545463.2 WI2-1690I13 fin SC 12350 99.555 5 yellow identity < 99.6%
CR545463.2 WI2-1690I13 fin SC AP000530.1 LA16c-65E1 unk Keio 22509 99.529 13 yellow identity < 99.6%
AP000530.1 LA16c-65E1 unk Keio AP000531.1 LA16c-59E1 unk Keio 12538 99.920 2 green simple sequence in gap
AP000531.1 LA16c-59E1 unk Keio AP000532.1 LA16c-2F2 unk Keio 7997 100 0 green  
AP000532.1 LA16c-2F2 unk Keio AP000533.1 LA16c-60G3 unk Keio 2489 99.880 0 green  
AP000533.1 LA16c-60G3 unk Keio AP000534.1 LA16c-23H5 unk Keio 2499 100 1 green simple sequence in gap
AP000534.1 LA16c-23H5 unk Keio AP000535.1 LA16c-58F10 unk Keio 4726 99.958 0 green  
AP000535.1 LA16c-58F10 unk Keio AP000536.1 LA16c-64C8 unk Keio 5211 100 0 green  
AP000536.1 LA16c-64C8 unk Keio AP000537.1 LA16c-54B2 unk Keio 6784 100 0 green  
AP000537.1 LA16c-54B2 unk Keio AP000538.1 LA16c-65B12 unk Keio 15491 100 0 green  
AP000538.1 LA16c-65B12 unk Keio AP000539.1 LA16c-72E11 unk Keio 10138 99.921 1 yellow >0 gap of 25bp or more, not simple sequence
AP000539.1 LA16c-72E11 unk Keio AP000540.2 LA16c-53D1 unk Keio 18531 100 0 green  
AP000540.2 LA16c-53D1 unk Keio AP000541.1 LA16c-13E4 unk Keio 2677 100 0 green  
AP000541.1 LA16c-13E4 unk Keio AP000542.1 LA16c-60D12 unk Keio 8599 99.837 2 green simple sequence in gap
AP000543.1 LA16c-20H12 unk Keio AP000544.1 LA16c-17H1 unk Keio 19023 99.595 10 yellow >0 gap of 25bp or more, not simple sequence; identity < 99.6%
AP000544.1 LA16c-17H1 unk Keio AP000545.1 LA16c-68B10 unk Keio 4337 99.977 0 green  
AP000545.1 LA16c-68B10 unk Keio AP000546.1 LA16c-18E3 unk Keio 4242 99.976 0 green  
AP000546.1 LA16c-18E3 unk Keio AP000547.1 KB-67B5 unk Keio 4738 99.641 1 green simple sequence in gap
AP000547.1 KB-67B5 unk Keio AP000365.1 KB-7G2 unk 33342 100 1 green  
AP000365.1 KB-7G2 unk AC005301.22 ? fin UOKNOR 5954 99.782 6 green simple sequence in gap
AC005301.22 ? fin UOKNOR AC007064.27 ? fin UOKNOR 36275 100 0 green  
AC007064.27 ? fin UOKNOR AC006548.22 ? fin UOKNOR 62187 99.841 14 green simple sequence in gap
AC006548.22 ? fin UOKNOR AC006946.20 ? fin UOKNOR 42583 100 0 green  
AC006946.20 ? fin UOKNOR AC005300.10 ? fin UOKNOR 64788 99.997 2 red >0 gap of 50bp or more, not simple sequence
AC005300.10 ? fin UOKNOR AC005399.21 ? fin UOKNOR 5686 99.930 1 green  
AC005399.21 ? fin UOKNOR AC004019.20 357F7 fin UOKNOR 22173 99.991 3 green simple sequence in gap
AC004019.20 357F7 fin UOKNOR AC007666.12 ? fin UOKNOR 104357 99.903 35 red >0 gap of 500bp or more, not simple sequence
AC007666.12 ? fin UOKNOR AC006285.13 ? fin UOKNOR 15507 100 0 green  
AC006285.13 ? fin UOKNOR AC016026.15 ? fin UOKNOR 6785 99.882 9 green simple sequence in gap
AC016026.15 ? fin UOKNOR AC016027.15 ? fin UOKNOR 3498 99.971 0 green  
AC016027.15 ? fin UOKNOR AC008079.24 ? fin UOKNOR 45512 99.978 1 green  
AC008079.24 ? fin UOKNOR AC008132.35 ? fin UOKNOR 8208 99.878 1 red half-dovetail of >50bp
AC008132.35 ? fin UOKNOR AC008103.29 ? fin UOKNOR 9553 99.393 8 yellow identity < 99.6%
AC008103.29 ? fin UOKNOR AC007326.28 ? fin UOKNOR 42364 99.986 1 green simple sequence in gap
AC007326.28 ? fin UOKNOR AC000095.5 ? fin UOKNOR 3414 100 0 green  
AC000095.5 ? fin UOKNOR AC004461.3 119F4 fin UOKNOR 15684 100 0 green  
AC004461.3 119F4 fin UOKNOR AC004462.4 18C3 fin UOKNOR 6721 99.940 1 green  
AC004462.4 18C3 fin UOKNOR AC004471.2 111F11 fin UOKNOR 1008 100 1 green simple sequence in gap
AC004471.2 111F11 fin UOKNOR AC004463.2 79H12 fin UOKNOR 3797 100 0 green  
AC004463.2 79H12 fin UOKNOR L77569.1 ? unk 5798 100 5 green simple sequence in gap
L77569.1 ? unk AC000081.2 59C10 fin UOKNOR 14447 99.951 4 green simple sequence in gap
AC000081.2 59C10 fin UOKNOR AC000094.4 ? fin UOKNOR 4412 100 0 green  
AC000094.4 ? fin UOKNOR AC000085.5 72F8 fin UOKNOR 23481 99.936 4 green simple sequence in gap
AC000085.5 72F8 fin UOKNOR AC000092.1 98C4 fin UOKNOR 33 100 0 green  
AC000092.1 98C4 fin UOKNOR AC000079.1 49C12 fin UOKNOR 1875 100 0 green  
AC000079.1 49C12 fin UOKNOR AC000068.2 102G9 fin UOKNOR 15191 100 0 green  
AC000068.2 102G9 fin UOKNOR AC000087.2 83C5 fin UOKNOR 6264 100 0 green  
AC000087.2 83C5 fin UOKNOR AC000088.2 83E8 fin UOKNOR 4242 100 0 green  
AC000088.2 83E8 fin UOKNOR AC000082.4 59F1 fin UOKNOR 17274 100 1 green  
AC000082.4 59F1 fin UOKNOR AC000070.2 105A fin UOKNOR 14394 100 0 green  
AC000070.2 105A fin UOKNOR AC000086.1 ? fin UOKNOR 2867 100 0 green  
AC000086.1 ? fin UOKNOR AC000077.2 ? fin UOKNOR 2055 100 0 green  
AC000077.2 ? fin UOKNOR AC002475.2 ? fin UOKNOR 100 100 0 green  
AC002475.2 ? fin UOKNOR AC000067.2 100H fin UOKNOR 120 100 0 green  
AC000067.2 100H fin UOKNOR AC000093.5 ? fin UOKNOR 1509 100 0 green  
AC000093.5 ? fin UOKNOR AC000091.1 ? fin UOKNOR 6643 100 0 green  
AC000091.1 ? fin UOKNOR AC000089.1 ? fin UOKNOR 846 100 0 green  
AC000089.1 ? fin UOKNOR AC000076.2 ? fin UOKNOR 9248 100 0 green  
AC000076.2 ? fin UOKNOR AC000078.2 ? fin UOKNOR 618 100 0 green  
AC000078.2 ? fin UOKNOR AC000090.3 ? fin UOKNOR 746 100 0 green  
AC000090.3 ? fin UOKNOR AC000080.2 ? fin UOKNOR 15216 100 0 green  
AC000080.2 ? fin UOKNOR AC005663.2 ? fin UOKNOR 26107 99.835 12 red >0 gap of 50bp or more, not simple sequence
AC005663.2 ? fin UOKNOR AC006547.9 ? fin UOKNOR 10334 99.990 0 green  
AC006547.9 ? fin UOKNOR AC007663.29 ? fin UOKNOR 64540 99.763 12 green simple sequence in gap
AC007663.29 ? fin UOKNOR AC024070.2 ? fin UOKNOR 3369 99.852 0 green  
AC024070.2 ? fin UOKNOR AC023490.5 ? fin UOKNOR 44 100 0 red more than one overlap present
AC011718.2 ? fin UOKNOR AC007731.16 ? fin UOKNOR 5992 99.149 2 yellow identity < 99.6%
AC007731.16 ? fin UOKNOR AC005500.2 ? fin UOKNOR 177532 99.966 23 green simple sequence in gap
AC005500.2 ? fin UOKNOR AC004033.3 ? fin UOKNOR 78505 99.978 11 red >2 gap of 25bp or more, not simple sequence
AC004033.3 ? fin UOKNOR AC007050.25 ? fin UOKNOR 56062 99.856 20 red >0 gap of 500bp or more, not simple sequence
AC007050.25 ? fin UOKNOR AC007308.13 ? fin UOKNOR 22675 99.921 0 green  
AC007308.13 ? fin UOKNOR AC002470.17 ? fin UOKNOR 144499 99.842 79 green simple sequence in gap
AC002470.17 ? fin UOKNOR AC002472.8 ? fin UOKNOR 43849 99.840 15 green simple sequence in gap
AC002472.8 ? fin UOKNOR AP000550.1 KB-1592A4 unk Keio 3965 99.950 1 green simple sequence in gap
AP000550.1 KB-1592A4 unk Keio AP000551.1 KB-876E2 unk Keio 1196 99.833 1 yellow alignment length < 2000
AP000551.1 KB-876E2 unk Keio AP000552.1 KB-1183D5 unk Keio 355 99.437 0 yellow half-dovetail of >0bp and <=50bp; identity < 99.6%; alignment length < 2000
AP000552.1 KB-1183D5 unk Keio AP000556.2 KB-1172D5 unk Keio 67422 100 0 green  
AP000556.2 KB-1172D5 unk Keio AP000557.2 KB-1323B2 unk Keio 69793 100 1 green simple sequence in gap
AP000557.2 KB-1323B2 unk Keio AP000558.1 KB-1802C5 unk Keio 21609 99.847 19 green simple sequence in gap
AP000558.1 KB-1802C5 unk Keio AP000553.1 KB-1440D3 unk Keio 11095 100 0 green  
AP000553.1 KB-1440D3 unk Keio AP000554.1 KB-666H9 unk Keio 357 100 0 yellow alignment length < 2000
AP000554.1 KB-666H9 unk Keio AP000555.1 KB-1027C11 unk Keio 586 100 0 yellow alignment length < 2000
AP000555.1 KB-1027C11 unk Keio D86995.1 LL22NC03-109G12 unk Keio 24888 100 3 green simple sequence in gap
D86995.1 LL22NC03-109G12 unk Keio D87019.1 LL22NC03-86G7 unk Keio 1133 100 0 yellow alignment length < 2000
D87019.1 LL22NC03-86G7 unk Keio D87012.1 LL22NC03-61D6 unk Keio 1070 100 0 yellow alignment length < 2000
D87012.1 LL22NC03-61D6 unk Keio D88268.1 LL22NC03-47H9 unk Keio 10457 100 0 green  
D88268.1 LL22NC03-47H9 unk Keio D86993.1 LL22NC03-23C6 unk Keio 7159 100 1 green simple sequence in gap
D86993.1 LL22NC03-23C6 unk Keio D87004.2 LL22NC03-4E7 unk Keio 802 100 0 yellow alignment length < 2000
D87004.2 LL22NC03-4E7 unk Keio D87022.1 LL22NC03-88E1 unk Keio 988 100 0 yellow alignment length < 2000
D87022.1 LL22NC03-88E1 unk Keio D88271.2 LL22NC03-114H4 unk Keio 5689 100 0 green  
D88271.2 LL22NC03-114H4 unk Keio D88269.2 LL22NC03-33B6 unk Keio 1521 100 0 yellow alignment length < 2000
D88269.2 LL22NC03-33B6 unk Keio D87000.2 LL22NC03-30E12 unk Keio 6491 100 0 green  
D87000.2 LL22NC03-30E12 unk Keio D86996.1 LL22NC03-23F1 unk Keio 658 100 0 yellow alignment length < 2000
D86996.1 LL22NC03-23F1 unk Keio D86989.2 LL22NC03-110H3 unk Keio 449 100 0 yellow alignment length < 2000
D86989.2 LL22NC03-110H3 unk Keio D88270.2 LL22NC03-123E1 unk Keio 131 100 0 yellow alignment length < 2000
D88270.2 LL22NC03-123E1 unk Keio D87003.1 LL22NC03-2H8 unk Keio 4210 100 0 green  
D87003.1 LL22NC03-2H8 unk Keio D87018.1 LL22NC03-80A10 unk Keio 940 100 0 yellow alignment length < 2000
D87018.1 LL22NC03-80A10 unk Keio D87016.2 LL22NC03-75A1 unk Keio 12877 100 0 green  
D87016.2 LL22NC03-75A1 unk Keio D86999.1 LL22NC03-22A12 unk Keio 6577 100 0 green  
D86999.1 LL22NC03-22A12 unk Keio D87010.1 LL22NC03-35B9 unk Keio 43 N/A 0 black initial certificate; alignment length < 100
D87010.1 LL22NC03-35B9 unk Keio D87009.1 KB-288A10 unk Keio 22596 99.920 5 green simple sequence in gap
D87009.1 KB-288A10 unk Keio D87011.2 LL22NC03-50D10 unk Keio 16648 99.537 8 yellow identity < 99.6%
D87011.2 LL22NC03-50D10 unk Keio D87013.1 LL22NC03-63E9 unk Keio 269 100 0 yellow alignment length < 2000
D87013.1 LL22NC03-63E9 unk Keio D87014.1 LL22NC03-61E11 unk Keio 3511 100 1 green simple sequence in gap
D87014.1 LL22NC03-61E11 unk Keio D86991.1 LL22NC03-29D3 unk Keio 501 100 0 yellow alignment length < 2000
D86991.1 LL22NC03-29D3 unk Keio D87002.1 LL22NC03-31F3 unk Keio 1717 100 1 yellow alignment length < 2000
D87002.1 LL22NC03-31F3 unk Keio D87006.1 LL22NC03-52F2 unk Keio 1375 100 0 yellow alignment length < 2000
D87006.1 LL22NC03-52F2 unk Keio D86994.1 LL22NC03-102D1 unk Keio 195 100 0 yellow alignment length < 2000
D86994.1 LL22NC03-102D1 unk Keio D87007.1 LL22NC03-48A11 unk Keio 699 100 0 yellow alignment length < 2000
D87007.1 LL22NC03-48A11 unk Keio D87015.2 LL22NC03-68D6 unk Keio 6731 100 0 green  
D87015.2 LL22NC03-68D6 unk Keio D86998.1 LL22NC03-24A12 unk Keio 4224 100 0 green  
D86998.1 LL22NC03-24A12 unk Keio D87021.1 LL22NC03-84E4 unk Keio 2435 100 0 green  
D87021.1 LL22NC03-84E4 unk Keio D87024.1 LL22NC03-92H4 unk Keio 3797 100 0 green  
D87024.1 LL22NC03-92H4 unk Keio D87020.1 LL22NC03-9G6 unk Keio 87 100 0 yellow half-dovetail of >0bp and <=50bp; alignment length < 2000
D87020.1 LL22NC03-9G6 unk Keio D87023.1 LL22NC03-9C5 unk Keio 120 100 0 yellow alignment length < 2000
D87023.1 LL22NC03-9C5 unk Keio D87017.2 LL22NC03-75C12 unk Keio 11916 99.992 0 green  
D87017.2 LL22NC03-75C12 unk Keio AP000360.1 ? unk 8436 100 0 green  
AP000360.1 ? unk AP000361.1 ? unk 4063 100 0 green  
AP000361.1 ? unk AP000362.1 ? unk 6270 100 0 green  
AP000362.1 ? unk AC000029.17 865E9 fin UOKNOR 21419 99.995 0 green  
AC000029.17 865E9 fin UOKNOR AC000102.1 60B5 fin UOKNOR 473 100 0 green  
AC000102.1 60B5 fin UOKNOR U07000.1 ? unk 381 100 1 yellow alignment length < 2000
U07000.1 ? unk AP000343.1 KB-282B12 unk 75261 99.899 12 green simple sequence in gap
AP000343.1 KB-282B12 unk AP000344.1 KB-1269D1 unk 30915 100 0 green  
AP000344.1 KB-1269D1 unk AP000345.1 KB-208E9 unk 30011 99.757 23 green simple sequence in gap
AP000345.1 KB-208E9 unk AP000346.1 KB-1572G7 unk 73351 99.873 23 red >0 gap of 500bp or more
AP000346.1 KB-1572G7 unk AP000347.1 KB-113H7 unk 38568 99.990 2 green simple sequence in gap
AP000347.1 KB-113H7 unk AP000348.1 ? unk 4973 99.940 0 green  
AP000348.1 ? unk AP000349.1 KB-1839H6 unk 8025 99.838 4 green simple sequence in gap
AP000349.1 KB-1839H6 unk AP000350.1 KB-1125A3 unk 5794 100 0 green  
AP000350.1 KB-1125A3 unk AP000351.3 KB-226F1 unk 19510 100 0 green  
AP000351.3 KB-226F1 unk AP000352.2 KB-1561E1 unk 40418 99.812 30 red >0 gap of 500bp or more
AP000352.2 KB-1561E1 unk AP000353.2 KB-318B8 unk Keio 24073 99.959 3 green simple sequence in gap
AP000353.2 KB-318B8 unk Keio AP000354.1 KB-1674E1 unk 4065 100 0 green  
AP000354.1 KB-1674E1 unk AP000355.1 KB-1896H10 unk 23313 100 0 green  
AP000355.1 KB-1896H10 unk AP000356.1 KB-1995A5 unk 28995 99.924 13 green simple sequence in gap
AP000356.1 KB-1995A5 unk AP000357.1 ? unk 9734 99.887 5 green simple sequence in gap
AP000357.1 ? unk AP000358.1 ? unk 19044 100 0 green  
AP000358.1 ? unk AP000359.1 KB-63E7 unk 15085 99.874 4 green simple sequence in gap
AP000359.1 KB-63E7 unk AL049759.10 RP5-930L11 fin SC 19810 99.884 7 green simple sequence in gap
AL049759.10 RP5-930L11 fin SC AL050312.8 RP11-9F11 fin SC 100 100 0 green  
AL050312.8 RP11-9F11 fin SC AL022323.7 CTA-243E7 fin SC 100 100 0 green  
AL022323.7 CTA-243E7 fin SC Z99916.1 CTA-221G9 fin SC 97 100 0 green  
Z99916.1 CTA-221G9 fin SC AL022332.2 RP3-462D8 fin SC 100 99.000 0 yellow identity < 99.6%
AL022332.2 RP3-462D8 fin SC AL022324.1 CTA-246H3 fin SC 100 99.000 0 yellow identity < 99.6%
AL022324.1 CTA-246H3 fin SC AL008721.1 CTA-390C10 fin SC 100 100 0 green  
AL008721.1 CTA-390C10 fin SC AL022329.9 CTA-407F11 fin SC 101 100 0 green  
AL022329.9 CTA-407F11 fin SC AL080245.14 RP11-89B2 fin SC 99 100 0 green  
AL080245.14 RP11-89B2 fin SC Z98949.1 CTA-125H2 fin SC 100 100 0 green  
Z98949.1 CTA-125H2 fin SC AL079300.11 CTA-109D1 fin SC 100 100 0 green  
AL079300.11 CTA-109D1 fin SC AL022337.19 CTA-796E4 fin SC 101 100 0 green  
AL022337.19 CTA-796E4 fin SC AL080273.10 RP11-259P1 fin SC 100 100 0 green  
AL080273.10 RP11-259P1 fin SC AL023513.1 RP1-268D13 fin SC 100 100 0 green  
AL023513.1 RP1-268D13 fin SC AL078460.6 RP3-341O5 fin SC 100 100 0 green  
AL078460.6 RP3-341O5 fin SC AL035044.1 RP1-40G4 fin SC 100 100 0 green  
AL035044.1 RP1-40G4 fin SC Z99714.2 CTB-48E9 fin SC 100 100 0 green  
Z99714.2 CTB-48E9 fin SC Z95115.1 CTA-445C9 fin SC 100 100 0 green  
Z95115.1 CTA-445C9 fin SC Z99774.1 CTA-373H7 fin SC 104 100 0 green  
Z99774.1 CTA-373H7 fin SC Z95889.1 CTA-211A9 fin SC 101 100 0 green  
Z95889.1 CTA-211A9 fin SC Z97353.3 RP1-90L6 fin SC 100 100 0 green  
Z97353.3 RP1-90L6 fin SC AL008638.1 CTA-992D9 fin SC 101 100 0 green  
AL008638.1 CTA-992D9 fin SC AL021153.1 CTA-503F6 fin SC 100 100 0 green  
AL021153.1 CTA-503F6 fin SC AL034386.2 RP5-1172A22 fin SC 100 100 0 green  
AL034386.2 RP5-1172A22 fin SC AL020994.1 CTA-929C8 fin SC 100 100 0 green  
AL020994.1 CTA-929C8 fin SC AL049536.5 RP1-205F14 fin SC 4192 99.857 2 green simple sequence in gap
AL049536.5 RP1-205F14 fin SC AL050402.16 RP11-46E17 fin SC 100 100 0 green  
AL050402.16 RP11-46E17 fin SC AL133456.1 RP1-231P7 fin SC 100 99.000 0 yellow identity < 99.6%
AL133456.1 RP1-231P7 fin SC AL133397.1 RP1-213J1__A fin SC 100 100 0 green  
AL133397.1 RP1-213J1__A fin SC AL390209.1 CTA-437G10__A fin SC 100 100 0 yellow half-dovetail of >0bp and <=50bp
AL390209.1 CTA-437G10__A fin SC AL133398.2 RP1-213J1__B fin SC 100 100 0 green  
AL133398.2 RP1-213J1__B fin SC AL121885.22 RP11-375H17 fin SC 100 100 0 green  
AL121885.22 RP11-375H17 fin SC AL390210.1 CTA-437G10__B fin SC 100 100 0 green  
AL390210.1 CTA-437G10__B fin SC AL031591.19 RP3-353E16 fin SC 104 100 0 green  
AL031591.19 RP3-353E16 fin SC AL033538.1 RP3-477H23 fin SC 100 100 0 green  
AL033538.1 RP3-477H23 fin SC AL035453.4 SC22CB-42E1 fin SC 100 100 0 green  
AL035453.4 SC22CB-42E1 fin SC AL050313.6 CTA-754D9 fin SC 100 100 0 green  
AL050313.6 CTA-754D9 fin SC AL035397.4 RP6-45P1 fin SC 100 100 0 green  
AL035397.4 RP6-45P1 fin SC AL023281.1 CTA-544A11 fin SC 104 100 0 green  
AL023281.1 CTA-544A11 fin SC AL008722.16 CTA-732E4 fin SC 101 100 0 green  
AL008722.16 CTA-732E4 fin SC AL080241.14 RP11-541J16 fin SC 106 100 0 green  
AL080241.14 RP11-541J16 fin SC AL118497.9 RP11-329J7 fin SC 100 100 0 green  
AL118497.9 RP11-329J7 fin SC AL121825.19 RP11-436C9 fin SC 100 100 0 green  
AL121825.19 RP11-436C9 fin SC AL117330.6 RP11-444G7 fin SC 100 100 0 green  
AL117330.6 RP11-444G7 fin SC AL023494.12 RP3-366L4 fin SC 100 100 0 green  
AL023494.12 RP3-366L4 fin SC Z93930.10 CTA-292E10 fin SC 100 100 0 green  
Z93930.10 CTA-292E10 fin SC AL031596.7 RP4-745C22 fin SC 106 100 0 green  
AL031596.7 RP4-745C22 fin SC Z95113.2 CTA-175E3 fin SC 100 100 0 green  
Z95113.2 CTA-175E3 fin SC AL021393.1 CTA-747E2 fin SC 100 100 0 green  
AL021393.1 CTA-747E2 fin SC Z95116.1 CTA-57G9 fin SC 6 N/A 0 purple approved certificate; no overlap present
Z95116.1 CTA-57G9 fin SC AL031186.8 CTA-984G1 fin SC 105 100 0 green  
AL031186.8 CTA-984G1 fin SC AC000026.3 58B8 fin UOKNOR 105 100 0 green  
AC000026.3 58B8 fin UOKNOR AC002059.3 ? fin UOKNOR 118158 99.979 7 red >0 gap of 50bp or more, not simple sequence
AC002059.3 ? fin UOKNOR AC000041.2 ? fin UOKNOR 36920 99.913 9 green simple sequence in gap
AC000041.2 ? fin UOKNOR AC000035.2 ? fin UOKNOR 2328 100 0 green  
AC000035.2 ? fin UOKNOR AC005529.7 CTA-256D12 fin UOKNOR 27591 99.906 12 green simple sequence in gap
AC005529.7 CTA-256D12 fin UOKNOR AC004882.3 RP1-76B20 fin WUGSC 137154 99.927 20 green simple sequence in gap
AC004882.3 RP1-76B20 fin WUGSC Z82171.2 SC22CB-11B7 fin SC 1453 100 0 green  
Z82171.2 SC22CB-11B7 fin SC AC004819.2 RP1-15I23 fin WUGSC 200 100 0 green  
AC004819.2 RP1-15I23 fin WUGSC AC003681.1 RP3-394A18 fin WUGSC 200 100 0 green  
AC003681.1 RP3-394A18 fin WUGSC AC003071.1 CTA-85E5 fin WUGSC 200 100 0 green  
AC003071.1 CTA-85E5 fin WUGSC AC002378.1 RP3-438O4 fin WUGSC 200 100 0 green  
AC002378.1 RP3-438O4 fin WUGSC AC004264.1 RP1-102K2 fin WUGSC 200 100 0 green  
AC004264.1 RP1-102K2 fin WUGSC AC004997.2 RP1-130H16 fin WUGSC 200 100 0 green  
AC004997.2 RP1-130H16 fin WUGSC AC004832.3 RP4-539M6 fin WUGSC 200 100 0 green  
AC004832.3 RP4-539M6 fin WUGSC AC005006.2 RP1-56J10 fin WUGSC 200 100 0 green  
AC005006.2 RP1-56J10 fin WUGSC AC003072.1 CTA-963H5 fin WUGSC 200 100 0 green  
AC003072.1 CTA-963H5 fin WUGSC AL079299.12 RP11-492A7 fin SC 106 100 0 green  
AL079299.12 RP11-492A7 fin SC AL022336.1 RP1-78F24 fin SC 104 99.038 0 yellow identity < 99.6%
AL022336.1 RP1-78F24 fin SC AC004542.1 RP3-430N8 fin WUGSC 7232 100 0 green  
AC004542.1 RP3-430N8 fin WUGSC AC005233.2 RP5-1198O21 fin WUGSC 200 100 0 green  
AC005233.2 RP5-1198O21 fin WUGSC AC005005.1 RP3-412A9 fin WUGSC 200 100 0 green  
AC005005.1 RP3-412A9 fin WUGSC AC002073.1 RP3-515N1 fin WUGSC 200 100 0 green  
AC002073.1 RP3-515N1 fin WUGSC AC005003.2 RP3-400N23 fin WUGSC 200 100 0 green  
AC005003.2 RP3-400N23 fin WUGSC AL096702.10 RP11-254F5 fin SC 101 100 0 green  
AL096702.10 RP11-254F5 fin SC AL096701.14 RP11-247I13 fin SC 100 100 0 green  
AL096701.14 RP11-247I13 fin SC AL109802.6 RP11-163M1 fin SC 100 100 0 green  
AL109802.6 RP11-163M1 fin SC AL096768.7 RP5-858B16 fin SC 98 100 0 green  
AL096768.7 RP5-858B16 fin SC AL031255.1 RP4-694E4 fin SC 105 100 0 green  
AL031255.1 RP4-694E4 fin SC AC005004.3 RP3-403E2 fin WUGSC 2307 99.090 2 yellow half-dovetail of >0bp and <=50bp; identity < 99.6%
AC005004.3 RP3-403E2 fin WUGSC AL022331.1 CTA-440B3 fin SC 100 100 0 green  
AL022331.1 CTA-440B3 fin SC Z82190.1 RP1-180M12 fin SC 100 100 0 green  
Z82190.1 RP1-180M12 fin SC Z83856.2 LL22NC03-113A11 fin SC 100 100 0 green  
Z83856.2 LL22NC03-113A11 fin SC Z82248.1 LL22NC03-44A4 fin SC 100 100 0 green  
Z82248.1 LL22NC03-44A4 fin SC AL008719.1 CTA-342B11 fin SC 101 100 0 green  
AL008719.1 CTA-342B11 fin SC Z74021.1 SC22CB-1E7 fin SC 101 100 0 green  
Z74021.1 SC22CB-1E7 fin SC Z80998.1 SC22CB-36G12 fin SC 105 100 0 green  
Z80998.1 SC22CB-36G12 fin SC Z83849.1 CITF22-65B7 fin SC 101 100 0 green  
Z83849.1 CITF22-65B7 fin SC AL022321.1 RP1-20O8 fin SC 100 100 0 green  
AL022321.1 RP1-20O8 fin SC Z83839.1 RP1-127L4 fin SC 100 100 0 green  
Z83839.1 RP1-127L4 fin SC AL008723.8 RP1-90G24 fin SC 101 100 0 green  
AL008723.8 RP1-90G24 fin SC AL021937.1 RP1-149A16 fin SC 100 100 0 green  
AL021937.1 RP1-149A16 fin SC AL035068.3 RP1-116G19 fin SC 100 100 0 green  
AL035068.3 RP1-116G19 fin SC Z71183.2 LL22NC03-28H9 fin SC 100 100 0 green  
Z71183.2 LL22NC03-28H9 fin SC Z82181.2 LL22NC01-86D10 fin SC 101 100 0 green  
Z82181.2 LL22NC01-86D10 fin SC Z80902.2 LL22NC03-80H12 fin SC 103 100 1 green simple sequence in gap
Z80902.2 LL22NC03-80H12 fin SC AL021452.20 CTA-285F3 fin SC 100 100 0 green  
AL021452.20 CTA-285F3 fin SC Z82246.2 LL22NC03-104C7 fin SC 100 100 0 green  
Z82246.2 LL22NC03-104C7 fin SC Z75744.2 LL22NC03-117B5 fin SC 100 100 0 green  
Z75744.2 LL22NC03-117B5 fin SC Z81309.1 LL22NC01-92H8 fin SC 101 100 0 green  
Z81309.1 LL22NC01-92H8 fin SC Z69714.1 LL22NC03-37F10 fin SC 101 100 0 green  
Z69714.1 LL22NC03-37F10 fin SC Z72521.1 LL22NC03-29F4 fin SC 100 100 0 green  
Z72521.1 LL22NC03-29F4 fin SC Z72520.2 LL22NC03-19H5 fin SC 102 100 0 green  
Z72520.2 LL22NC03-19H5 fin SC Z73495.1 LL22NC01-116C6 fin SC 106 100 0 green  
Z73495.1 LL22NC01-116C6 fin SC AL023282.1 CTA-766E1 fin SC 100 100 0 green  
AL023282.1 CTA-766E1 fin SC Z73979.1 SC22CB-10B1 fin SC 100 100 0 green  
Z73979.1 SC22CB-10B1 fin SC Z98256.1 RP1-309I22 fin SC 104 100 0 green  
Z98256.1 RP1-309I22 fin SC AL031592.1 CTA-366B10 fin SC 100 99.000 0 yellow identity < 99.6%
AL031592.1 CTA-366B10 fin SC Z83846.1 CTA-415G2 fin SC 100 100 0 green  
Z83846.1 CTA-415G2 fin SC Z82198.2 RP1-302D9 fin SC 100 100 0 green  
Z82198.2 RP1-302D9 fin SC AL008630.1 CTA-282F2 fin SC 101 99.010 0 yellow identity < 99.6%
AL008630.1 CTA-282F2 fin SC Z82173.2 SC22CB-1D7 fin SC 101 100 0 green  
Z82173.2 SC22CB-1D7 fin SC AL008715.1 CTC-216H12 fin SC 100 100 0 green  
AL008715.1 CTC-216H12 fin SC AL023577.1 CTA-566G5 fin SC 100 100 0 green  
AL023577.1 CTA-566G5 fin SC Z82179.3 LL22NC01-140F8 fin SC 100 100 0 green  
Z82179.3 LL22NC01-140F8 fin SC Z73421.1 LL22NC03-37D7 fin SC 104 100 0 green  
Z73421.1 LL22NC03-37D7 fin SC AL133451.1 LL22NC03-120B6 fin SC 104 100 0 green  
AL133451.1 LL22NC03-120B6 fin SC Z69943.3 LL22NC03-4F11 fin SC 101 100 0 green  
Z69943.3 LL22NC03-4F11 fin SC AL008640.1 SC22CB-33D11 fin SC 103 100 0 green  
AL008640.1 SC22CB-33D11 fin SC Z70288.1 LL22NC01-78G1 fin SC 104 100 0 green  
Z70288.1 LL22NC01-78G1 fin SC Z97354.1 LL22NC03-117F11 fin SC 103 100 0 green  
Z97354.1 LL22NC03-117F11 fin SC Z69042.1 LL22NC01-95B1 fin SC 104 100 0 green  
Z69042.1 LL22NC01-95B1 fin SC Z68287.1 LL22NC03-38E12 fin SC 104 100 0 green  
Z68287.1 LL22NC03-38E12 fin SC Z76736.1 RP1-75E8 fin SC 103 100 0 green  
Z76736.1 RP1-75E8 fin SC Z69713.2 LL22NC03-20A6 fin SC 101 100 0 green  
Z69713.2 LL22NC03-20A6 fin SC Z68324.1 LL22NC03-7A10 fin SC 101 100 0 green  
Z68324.1 LL22NC03-7A10 fin SC AL096754.1 LL22NC03-2E9 fin SC 101 100 0 green  
AL096754.1 LL22NC03-2E9 fin SC Z49866.2 LL22NC03-73A10 fin SC 100 100 0 green  
Z49866.2 LL22NC03-73A10 fin SC Z54073.2 LL22NC03-13E1 fin SC 104 100 0 green  
Z54073.2 LL22NC03-13E1 fin SC Z77853.1 LL22NC03-53F3 fin SC 101 100 0 green  
Z77853.1 LL22NC03-53F3 fin SC Z69715.2 LL22NC03-74G7 fin SC 103 100 0 green  
Z69715.2 LL22NC03-74G7 fin SC Z73429.1 LL22NC03-32F9 fin SC 101 100 0 green  
Z73429.1 LL22NC03-32F9 fin SC Z69925.2 LL22NC03-116A5 fin SC 104 100 0 green  
Z69925.2 LL22NC03-116A5 fin SC Z68223.1 LL22NC01-110C7 fin SC 106 100 0 green  
Z68223.1 LL22NC01-110C7 fin SC Z83852.1 SC22CB-49C12 fin SC 102 100 0 green  
Z83852.1 SC22CB-49C12 fin SC Z82182.2 LL22NC01-90C2 fin SC 105 100 0 green  
Z82182.2 LL22NC01-90C2 fin SC Z99704.1 LL22NC01-75B8 fin SC 104 100 0 green  
Z99704.1 LL22NC01-75B8 fin SC Z74581.1 LL22NC01-127C11 fin SC 104 100 0 green  
Z74581.1 LL22NC01-127C11 fin SC AL008641.1 LL22NC03-100B10 fin SC 104 100 0 green  
AL008641.1 LL22NC03-100B10 fin SC Z69707.1 LL22NC01-95B9 fin SC 104 100 0 green  
Z69707.1 LL22NC01-95B9 fin SC Z68285.2 LL22NC03-11D4 fin SC 100 100 0 green  
Z68285.2 LL22NC03-11D4 fin SC AL022338.1 LL22NC01-82F7 fin SC 100 99.000 1 yellow identity < 99.6%; alignment length < 2000
AL022338.1 LL22NC01-82F7 fin SC Z82250.1 LL22NC03-86D4 fin SC 100 100 0 green  
Z82250.1 LL22NC03-86D4 fin SC AL008717.1 CTA-221H1 fin SC 100 100 0 green  
AL008717.1 CTA-221H1 fin SC Z68323.2 LL22NC03-13G6 fin SC 100 100 0 green  
Z68323.2 LL22NC03-13G6 fin SC Z68288.2 LL22NC03-5E4 fin SC 104 100 0 green  
Z68288.2 LL22NC03-5E4 fin SC Z68325.1 LL22NC03-98E6 fin SC 101 100 0 green  
Z68325.1 LL22NC03-98E6 fin SC Z69712.2 LL22NC03-12G10 fin SC 101 100 0 green  
Z69712.2 LL22NC03-12G10 fin SC Z68754.1 LL22NC01-78H10 fin SC 100 100 0 green  
Z68754.1 LL22NC01-78H10 fin SC Z68758.1 LL22NC03-85E10 fin SC 101 100 0 green  
Z68758.1 LL22NC03-85E10 fin SC Z50860.1 LL22NC03-76A1 fin SC 100 100 0 green  
Z50860.1 LL22NC03-76A1 fin SC AL020992.1 CTA-363A12 fin SC 92 100 0 yellow half-dovetail of >0bp and <=50bp
AL020992.1 CTA-363A12 fin SC Z68224.1 LL22NC01-129H9 fin SC 100 100 0 green  
Z68224.1 LL22NC01-129H9 fin SC AL049750.1 LL22NC01-141E2 fin SC 100 99.000 0 yellow identity < 99.6%
AL049750.1 LL22NC01-141E2 fin SC Z69907.2 LL22NC03-22D1 fin SC 100 100 0 green  
Z69907.2 LL22NC03-22D1 fin SC AL031001.1 RP1-281O16 fin SC 100 100 0 green  
AL031001.1 RP1-281O16 fin SC AL021877.1 RP1-101G11 fin SC 100 100 0 green  
AL021877.1 RP1-101G11 fin SC Z82196.2 RP1-288L1 fin SC 104 100 0 green  
Z82196.2 RP1-288L1 fin SC AL024495.1 RP3-404L14 fin SC 104 100 0 green  
AL024495.1 RP3-404L14 fin SC Z82194.1 RP1-272J12 fin SC 104 100 0 green  
Z82194.1 RP1-272J12 fin SC Z83853.2 SC22CB-109E1 fin SC 104 100 0 green  
Z83853.2 SC22CB-109E1 fin SC AL024494.1 RP1-215F16 fin SC 100 99.000 0 yellow identity < 99.6%
AL024494.1 RP1-215F16 fin SC Z99755.1 CTA-714B7 fin SC 100 100 0 green  
Z99755.1 CTA-714B7 fin SC AL031300.1 RP3-323A16 fin SC 106 100 0 green  
AL031300.1 RP3-323A16 fin SC AL008635.1 RP3-510H16 fin SC 104 100 0 green  
AL008635.1 RP3-510H16 fin SC Z82244.1 CTA-286B10 fin SC 113 100 0 green  
Z82244.1 CTA-286B10 fin SC CR381707.2 ? fin SC 100 100 0 green  
CR381707.2 ? fin SC BX936361.4 CITF22-91B8 fin SC 1000 100 0 yellow half-dovetail of >0bp and <=50bp
BX936361.4 CITF22-91B8 fin SC BX927085.4 CITF22-37A6 fin SC 2000 100 0 yellow half-dovetail of >0bp and <=50bp
BX927085.4 CITF22-37A6 fin SC CR381709.1 ? fin SC 1946 99.897 2 yellow half-dovetail of >0bp and <=50bp; alignment length < 2000
CR381709.1 ? fin SC AL022334.1 RP4-569D19 fin SC 100 100 0 green  
AL022334.1 RP4-569D19 fin SC AL049747.1 CITF22-62D4 fin SC 100 100 0 green  
AL049747.1 CITF22-62D4 fin SC Z79996.2 SC22CB-33F2 fin SC 94 100 0 green  
Z79996.2 SC22CB-33F2 fin SC AL049748.2 RP1-41P2 fin SC 100 100 0 green  
AL049748.2 RP1-41P2 fin SC AL079295.1 RP1-106I20 fin SC 100 100 0 green  
AL079295.1 RP1-106I20 fin SC Z82217.1 RP1-78B3 fin SC 104 100 0 green  
Z82217.1 RP1-78B3 fin SC Z95114.19 CTA-212A2 fin SC 104 99.038 0 yellow identity < 99.6%
Z95114.19 CTA-212A2 fin SC AL031426.1 CTA-191D12 fin SC 100 100 0 green  
AL031426.1 CTA-191D12 fin SC Z82215.1 RP1-68O2 fin SC 101 100 0 green  
Z82215.1 RP1-68O2 fin SC CR383703.1 RP4-633O19__A fin SC 100 100 0 green  
CR383703.1 RP4-633O19__A fin SC BX470187.9 WI2-80423F1 fin SC 1994 99.749 2 green simple sequence in gap
BX470187.9 WI2-80423F1 fin SC CR383704.1 RP4-633O19__B fin SC 1995 99.749 1 green simple sequence in gap
CR383704.1 RP4-633O19__B fin SC AL022313.1 RP5-1119A7 fin SC 100 100 0 green  
AL022313.1 RP5-1119A7 fin SC AL031845.7 CTA-566H6 fin SC 2000 100 1 green simple sequence in gap
AL031845.7 CTA-566H6 fin SC Z70289.1 CITF22-4G12 fin SC 100 100 0 green  
Z70289.1 CITF22-4G12 fin SC AL049749.2 RP1-293L6 fin SC 100 100 0 green  
AL049749.2 RP1-293L6 fin SC Z80897.2 LL22NC01-132D12 fin SC 100 100 0 green  
Z80897.2 LL22NC01-132D12 fin SC Z82184.1 CITF22-126G10 fin SC 104 100 0 green  
Z82184.1 CITF22-126G10 fin SC Z82185.1 CITF22-24E5 fin SC 104 100 0 green  
Z82185.1 CITF22-24E5 fin SC AL008637.1 CTA-833B7 fin SC 100 100 0 green  
AL008637.1 CTA-833B7 fin SC AL133392.1 CITF22-45C1 fin SC 100 100 0 green  
AL133392.1 CITF22-45C1 fin SC Z82180.19 LL22NC01-81G9 fin SC 100 100 0 green  
Z82180.19 LL22NC01-81G9 fin SC Z73420.1 LL22NC01-146D10 fin SC 100 100 0 green  
Z73420.1 LL22NC01-146D10 fin SC AL022314.1 RP5-1170K4 fin SC 104 100 0 green  
AL022314.1 RP5-1170K4 fin SC Z82188.2 RP1-151B14 fin SC 104 100 0 green  
Z82188.2 RP1-151B14 fin SC Z94160.1 RP1-63G5 fin SC 101 100 0 green  
Z94160.1 RP1-63G5 fin SC FP325335.1 RP5-889J22 fin SC 104 100 0 yellow alignment length < 2000
FP325335.1 RP5-889J22 fin SC AL022315.1 RP5-1177I5 fin SC 104 100 0 yellow alignment length < 2000
AL022315.1 RP5-1177I5 fin SC AL109980.1 RP4-697G8 fin SC 104 100 0 green  
AL109980.1 RP4-697G8 fin SC AL035496.6 RP3-437O22 fin SC 104 100 0 green  
AL035496.6 RP3-437O22 fin SC Z83844.5 RP1-37E16 fin SC 104 100 0 green  
Z83844.5 RP1-37E16 fin SC Z97630.11 RP3-466N1 fin SC 100 100 0 green  
Z97630.11 RP3-466N1 fin SC AL022311.5 RP5-1014D13 fin SC 100 99.000 0 yellow identity < 99.6%
AL022311.5 RP5-1014D13 fin SC AL031587.3 RP5-1039K5 fin SC 100 100 0 green  
AL031587.3 RP5-1039K5 fin SC AL022322.1 CTA-228A9 fin SC 101 100 0 green  
AL022322.1 CTA-228A9 fin SC AL021977.10 CTA-447C4 fin SC 94 100 0 green  
AL021977.10 CTA-447C4 fin SC AL020993.1 RP1-5O6 fin SC 100 100 0 green  
AL020993.1 RP1-5O6 fin SC Z98749.11 RP3-449O17 fin SC 100 100 1 green simple sequence in gap
Z98749.11 RP3-449O17 fin SC Z97056.1 RP3-434P1 fin SC 100 100 0 green  
Z97056.1 RP3-434P1 fin SC AL022320.23 RP1-199H16 fin SC 104 100 0 green  
AL022320.23 RP1-199H16 fin SC AL035495.13 RP1-319F24 fin SC 100 100 0 green  
AL035495.13 RP1-319F24 fin SC AL021707.2 RP3-508I15 fin SC 100 100 0 green  
AL021707.2 RP3-508I15 fin SC AL021806.1 RP4-779B17 fin SC 100 100 0 green  
AL021806.1 RP4-779B17 fin SC AL008583.1 RP3-327J16 fin SC 100 100 0 green  
AL008583.1 RP3-327J16 fin SC AL022318.2 CTA-150C2 fin SC 100 100 0 green  
AL022318.2 CTA-150C2 fin SC AL078641.2 RP3-494G10 fin SC 100 100 0 green  
AL078641.2 RP3-494G10 fin SC AL031846.2 RP4-742C19 fin SC 100 100 0 green  
AL031846.2 RP4-742C19 fin SC Z81010.2 LL22NC03-10C3 fin SC 100 100 0 green  
Z81010.2 LL22NC03-10C3 fin SC AL031590.2 CTA-232D4 fin SC 100 100 0 green  
AL031590.2 CTA-232D4 fin SC AL022326.1 RP3-333H23 fin SC 100 100 0 green  
AL022326.1 RP3-333H23 fin SC Z83845.14 RP3-407F17 fin SC 100 100 0 green  
Z83845.14 RP3-407F17 fin SC AL022312.7 RP5-1104E15 fin SC 100 100 0 green  
AL022312.7 RP5-1104E15 fin SC AL008716.1 CTA-206C7 fin SC 105 100 0 green  
AL008716.1 CTA-206C7 fin SC AL022319.2 RP1-172B20 fin SC 100 100 0 green  
AL022319.2 RP1-172B20 fin SC AL022353.1 CTA-352E11 fin SC 100 100 0 green  
AL022353.1 CTA-352E11 fin SC Z82206.1 RP3-370M22 fin SC 100 100 0 green  
Z82206.1 RP3-370M22 fin SC Z83847.1 RP3-496C20 fin SC 104 100 0 green  
Z83847.1 RP3-496C20 fin SC AL033547.8 RP3-340K22 fin SC 104 100 0 green  
AL033547.8 RP3-340K22 fin SC AL031589.10 RP6-11O7 fin SC 104 100 0 green  
AL031589.10 RP6-11O7 fin SC Z93783.6 RP3-377F16 fin SC 100 100 0 green  
Z93783.6 RP3-377F16 fin SC AL022238.1 RP5-1042K10 fin SC 100 100 0 green  
AL022238.1 RP5-1042K10 fin SC AL031594.9 RP4-591N18 fin SC 100 100 0 green  
AL031594.9 RP4-591N18 fin SC Z86090.10 CTA-229A8 fin SC 106 100 0 green  
Z86090.10 CTA-229A8 fin SC AL096703.14 RP4-735G18 fin SC 100 100 0 green  
AL096703.14 RP4-735G18 fin SC AL049764.4 RP3-362J20 fin SC 100 100 0 green  
AL049764.4 RP3-362J20 fin SC Z98048.1 RP3-408N23 fin SC 100 100 0 green  
Z98048.1 RP3-408N23 fin SC AL035450.1 RP5-1057D18 fin SC 104 100 0 green  
AL035450.1 RP5-1057D18 fin SC AL080242.11 RP11-554C12 fin SC 104 100 0 green  
AL080242.11 RP11-554C12 fin SC AL080243.21 RP11-12M9 fin SC 101 100 0 green  
AL080243.21 RP11-12M9 fin SC AL096765.12 RP11-422A16 fin SC 100 100 0 green  
AL096765.12 RP11-422A16 fin SC AL035658.7 RP1-85F18 fin SC 101 100 0 green  
AL035658.7 RP1-85F18 fin SC AL035681.13 RP4-756G23 fin SC 100 100 0 green  
AL035681.13 RP4-756G23 fin SC AL035659.22 RP5-979N1 fin SC 100 100 0 green  
AL035659.22 RP5-979N1 fin SC AL008582.11 CTA-223H9 fin SC 100 100 0 green  
AL008582.11 CTA-223H9 fin SC AL023553.5 RP3-347H13 fin SC 100 100 0 green  
AL023553.5 RP3-347H13 fin SC Z83840.7 CTA-216E10 fin SC 104 100 0 green  
Z83840.7 CTA-216E10 fin SC AL023879.1 CTA-109G6 fin SC 99 100 0 green  
AL023879.1 CTA-109G6 fin SC AL021453.1 RP5-821D11 fin SC 100 100 0 green  
AL021453.1 RP5-821D11 fin SC Z99716.4 CTA-250D10 fin SC 101 100 0 green  
Z99716.4 CTA-250D10 fin SC Z82192.1 RP1-186O1 fin SC 100 99.000 0 yellow identity < 99.6%
Z82192.1 RP1-186O1 fin SC AL021878.4 RP1-257I20 fin SC 100 100 0 yellow alignment length < 2000
AL021878.4 RP1-257I20 fin SC BX247885.11 RP4-669P10 fin SC 76241 99.904 24 red >0 gap of 500bp or more, not simple sequence
BX247885.11 RP4-669P10 fin SC Z83851.17 CTA-989H11 fin SC 1295 100 0 green  
Z83851.17 CTA-989H11 fin SC AL022316.2 CTA-126B4 fin SC 100 100 0 green  
AL022316.2 CTA-126B4 fin SC AL035418.6 RP1-141I3 fin SC 100 100 0 green  
AL035418.6 RP1-141I3 fin SC Z93241.11 RP1-222E13 fin SC 100 99.000 0 yellow identity < 99.6%
Z93241.11 RP1-222E13 fin SC Z82176.1 SC22CB-33B7 fin SC 100 100 0 green  
Z82176.1 SC22CB-33B7 fin SC AL049757.14 RP1-47A17 fin SC 104 100 0 green  
AL049757.14 RP1-47A17 fin SC AL049758.11 RP3-437M21 fin SC 104 100 0 green  
AL049758.11 RP3-437M21 fin SC AL022476.2 RP3-323M22 fin SC 100 100 0 green  
AL022476.2 RP3-323M22 fin SC AL022237.1 CTB-191B2 fin SC 102 99.020 0 yellow identity < 99.6%; alignment length < 2000
AL022237.1 CTB-191B2 fin SC Z82214.23 RP3-526I14 fin SC 100 100 0 green  
Z82214.23 RP3-526I14 fin SC Z99756.7 RP1-100N22 fin SC 100 99.000 0 yellow identity < 99.6%
Z99756.7 RP1-100N22 fin SC FP325334.1 RP4-754E20 fin SC 100 99.000 0 yellow identity < 99.6%; alignment length < 2000
FP325334.1 RP4-754E20 fin SC AL049708.9 PRYM736A3A fin SC 100 100 0 yellow alignment length < 2000
AL049708.9 PRYM736A3A fin SC BX890592.4 C005500511 fin SC 2399 99.917 0 green  
BX890592.4 C005500511 fin SC CU137653.1 C0511C0695L fin SC 1325 99.774 0 yellow alignment length < 2000
CU137653.1 C0511C0695L fin SC CR377231.3 C008600695RC fin SC 1263 99.842 0 yellow alignment length < 2000
CR377231.3 C008600695RC fin SC BX546033.2 FW80414D10L fin SC 732 100 0 green  
BX546033.2 FW80414D10L fin SC AL929420.9 CITF22-123F2 fin SC 3213 99.938 1 green simple sequence in gap
AL929420.9 CITF22-123F2 fin SC AL118498.9 RP1-185D5 fin SC 2000 99.900 3 green simple sequence in gap
AL118498.9 RP1-185D5 fin SC AL031843.2 RP1-246D7 fin SC 100 100 0 green  
AL031843.2 RP1-246D7 fin SC Z82201.1 RP3-345P10 fin SC 100 100 0 green  
Z82201.1 RP3-345P10 fin SC AL023801.1 RP4-786D3 fin SC 100 100 0 green  
AL023801.1 RP4-786D3 fin SC Z97055.1 RP3-388M5 fin SC 100 100 0 green  
Z97055.1 RP3-388M5 fin SC AL023654.2 RP4-549K18 fin SC 100 100 0 green  
AL023654.2 RP4-549K18 fin SC AL035398.19 RP4-796I17 fin SC 101 100 0 green  
AL035398.19 RP4-796I17 fin SC Z82178.2 SC22CB-79B4 fin SC 104 100 0 green  
Z82178.2 SC22CB-79B4 fin SC Z82174.2 SC22CB-20F6 fin SC 105 100 0 green  
Z82174.2 SC22CB-20F6 fin SC AL033543.6 CTA-414D7 fin SC 103 100 0 green  
AL033543.6 CTA-414D7 fin SC AL031595.4 RP4-671O14 fin SC 107 100 0 green  
AL031595.4 RP4-671O14 fin SC AL022339.1 LL22NC03-75B3 fin SC 104 100 0 green  
AL022339.1 LL22NC03-75B3 fin SC AL591914.3 CITF22-4H11 fin SC 2000 100 0 green  
AL591914.3 CITF22-4H11 fin SC AL671760.9 CITF22-11D1 fin SC 2000 100 0 green  
AL671760.9 CITF22-11D1 fin SC CR933566.2 C017600455L fin SC 2245 99.822 0 green  
CR933566.2 C017600455L fin SC CR936470.4 C455C658L fin SC 793 99.874 0 green  
CR936470.4 C455C658L fin SC CR936488.2 C009500658L fin SC 345 100 0 green  
CR936488.2 C009500658L fin SC CU210860.2 AA-58C926RCL fin SC 744 100 0 yellow alignment length < 2000
CU210860.2 AA-58C926RCL fin SC CT009695.1 AA-26RCL fin SC 220 100 0 yellow alignment length < 2000
CT009695.1 AA-26RCL fin SC CR954960.1 CHIMPC702L fin SC 113 100 0 yellow alignment length < 2000
CR954960.1 CHIMPC702L fin SC BX890582.2 C024501702 fin SC 307 100 0 green  
BX890582.2 C024501702 fin SC AL929500.4 CITF22-57B10 fin SC 901 99.889 0 green  
AL929500.4 CITF22-57B10 fin SC Z85994.1 RP1-32I10 fin SC 2000 99.800 0 green  
Z85994.1 RP1-32I10 fin SC Z81308.2 CTA-397C4 fin SC 104 100 0 green  
Z81308.2 CTA-397C4 fin SC AL023973.1 RP5-1033E15 fin SC 100 100 0 green  
AL023973.1 RP5-1033E15 fin SC Z75407.2 LL22NC03-128A12 fin SC 100 100 0 green  
Z75407.2 LL22NC03-128A12 fin SC AL022317.1 RP1-140L1 fin SC 100 100 0 green  
AL022317.1 RP1-140L1 fin SC AL022333.1 RP3-474I12 fin SC 100 100 0 green  
AL022333.1 RP3-474I12 fin SC Z98743.1 RP1-181C9 fin SC 100 100 0 green  
Z98743.1 RP1-181C9 fin SC Z93244.1 CTA-116F5 fin SC 111 100 0 green  
Z93244.1 CTA-116F5 fin SC Z83838.2 RP1-127B20 fin SC 100 100 0 green  
Z83838.2 RP1-127B20 fin SC AL079301.14 RP4-753M9 fin SC 100 98.000 0 yellow identity < 99.6%; alignment length < 2000
AL079301.14 RP4-753M9 fin SC AL049760.26 PRYR7CC1 fin SC 100 100 0 green  
AL049760.26 PRYR7CC1 fin SC Z82243.1 CTA-217C2 fin SC 100 99.000 0 yellow identity < 99.6%
Z82243.1 CTA-217C2 fin SC AL008718.23 CTA-268H5 fin SC 101 100 0 green  
AL008718.23 CTA-268H5 fin SC AL021391.2 RP1-102D24 fin SC 100 100 0 green  
AL021391.2 RP1-102D24 fin SC Z98047.1 RP1-162H14 fin SC 100 100 0 green  
Z98047.1 RP1-162H14 fin SC Z95331.2 CTA-941F9 fin SC 104 100 0 green  
Z95331.2 CTA-941F9 fin SC Z93784.1 RP3-398C22 fin SC 104 100 0 green  
Z93784.1 RP3-398C22 fin SC Z84478.1 RP1-37M3 fin SC 100 100 0 green  
Z84478.1 RP1-37M3 fin SC BX324167.9 WI2--85898F10 fin SC 1998 99.700 1 green simple sequence in gap
BX324167.9 WI2--85898F10 fin SC BX511035.7 RP11-435J19 fin SC 1999 99.900 0 green  
BX511035.7 RP11-435J19 fin SC CR536603.4 WI2-2439F13 fin SC 2000 100 0 green  
CR536603.4 WI2-2439F13 fin SC CR956437.2 FW2439FW1777L fin SC 683 99.707 0 green  
CR956437.2 FW2439FW1777L fin SC CR933557.2 FW1777B19L fin SC 18 N/A 0 black initial certificate; half-dovetail of >50bp; alignment length < 100
CR933557.2 FW1777B19L fin SC BX537318.11 CITF22-92A6 fin SC 783 100 0 green  
BX537318.11 CITF22-92A6 fin SC AL929387.7 RP11-398F12 fin SC 2000 100 0 green  
AL929387.7 RP11-398F12 fin SC AL121672.30 RP6-109B7 fin SC 2000 100 0 green  
AL121672.30 RP6-109B7 fin SC FP325332.1 RP4-695O20 fin SC 2000 100 0 green  
FP325332.1 RP4-695O20 fin SC AL078611.1 5E3 fin SC 100 100 0 yellow alignment length < 2000
AL078611.1 5E3 fin SC AL031034.1 LL22NC03-98G1 fin SC 100 100 0 green  
AL031034.1 LL22NC03-98G1 fin SC Z93024.1 LL22NC03-5H6 fin SC 100 100 0 green  
Z93024.1 LL22NC03-5H6 fin SC AL031844.1 RP3-361H15 fin SC 100 100 0 green  
AL031844.1 RP3-361H15 fin SC AL031588.1 RP5-1163J1 fin SC 100 100 0 green  
AL031588.1 RP5-1163J1 fin SC AL031597.7 RP5-996D20 fin SC 104 100 0 green  
AL031597.7 RP5-996D20 fin SC AL021392.5 RP3-439F8 fin SC 100 100 0 green  
AL021392.5 RP3-439F8 fin SC AL096766.12 RP6-59H18 fin SC 100 100 0 green  
AL096766.12 RP6-59H18 fin SC AL118516.10 CTA-29F11 fin SC 104 100 0 green  
AL118516.10 CTA-29F11 fin SC AL078642.12 RP5-917C11 fin SC 104 100 0 green  
AL078642.12 RP5-917C11 fin SC Z97351.1 RP1-116M15 fin SC 100 100 0 green  
Z97351.1 RP1-116M15 fin SC Z82187.1 CITF22-64F4 fin SC 105 100 0 green  
Z82187.1 CITF22-64F4 fin SC U51561.1 79E2 fin 104 100 0 green  
U51561.1 79E2 fin AL023576.1 CTA-358H9 fin SC 100 100 0 green  
AL023576.1 CTA-358H9 fin SC Z80896.2 RP1-67C13 fin SC 100 100 0 green  
Z80896.2 RP1-67C13 fin SC Z79999.2 CITF22-111A3 fin SC 104 100 0 green  
Z79999.2 CITF22-111A3 fin SC AL023733.1 58F5 fin SC 100 100 0 green  
AL023733.1 58F5 fin SC Z81000.2 CITF22-67D6 fin SC 100 99.000 0 yellow identity < 99.6%
Z81000.2 CITF22-67D6 fin SC FP325331.1 RP3-477J10 fin SC 100 100 0 yellow alignment length < 2000
FP325331.1 RP3-477J10 fin SC Z82183.1 LL22NC01-98F6 fin SC 100 99.000 0 yellow identity < 99.6%; alignment length < 2000
Z82183.1 LL22NC01-98F6 fin SC Z83836.2 RP1-111J24 fin SC 102 100 0 green  
Z83836.2 RP1-111J24 fin SC Z82186.1 CITF22-49D8 fin SC 104 100 0 green  
Z82186.1 CITF22-49D8 fin SC AL035069.5 RP3-404P13 fin SC 100 100 0 green  
AL035069.5 RP3-404P13 fin SC Z84496.1 LL22NC03-75H12 fin SC 100 100 0 green  
Z84496.1 LL22NC03-75H12 fin SC AL021306.1 CTB-109B5 fin SC 104 100 0 green  
AL021306.1 CTB-109B5 fin SC Z80999.1 LL22NC01-140G5 fin SC 104 100 0 green  
Z80999.1 LL22NC01-140G5 fin SC Z73416.2 LL22NC03-114B2 fin SC 101 100 0 green  
Z73416.2 LL22NC03-114B2 fin SC AL033544.15 LL22NC01-107C5 fin SC 100 100 0 green  
AL033544.15 LL22NC01-107C5 fin SC AL049568.8 SC22CB-23F1 fin SC 1994 99.549 2 yellow identity < 99.6%; alignment length < 2000
AL049568.8 SC22CB-23F1 fin SC Z80901.1 LL22NC03-119A7 fin SC 100 100 0 yellow alignment length < 2000
Z80901.1 LL22NC03-119A7 fin SC AC000034.3 ? fin UOKNOR 39520 99.884 15 green simple sequence in gap
AC000034.3 ? fin UOKNOR Z83854.2 SC22CB-44H3 fin SC 141 99.291 0 yellow identity < 99.6%
Z83854.2 SC22CB-44H3 fin SC AL117329.8 RP11-191L9 fin SC 104 99.038 0 yellow identity < 99.6%
AL117329.8 RP11-191L9 fin SC AL121580.9 RP13-455A7 fin SC 100 100 0 yellow alignment length < 2000
AL121580.9 RP13-455A7 fin SC FP325330.1 CTA-280A3 fin SC 100 100 0 yellow alignment length < 2000
FP325330.1 CTA-280A3 fin SC Z70688.1 LL22NC03-27C5 fin SC 100 100 0 yellow alignment length < 2000
Z70688.1 LL22NC03-27C5 fin SC Z81002.2 LL22NC03-53A9 fin SC 101 100 0 green  
Z81002.2 LL22NC03-53A9 fin SC Z80772.1 CITF22-37F6 fin SC 101 100 0 green  
Z80772.1 CITF22-37F6 fin SC BX284656.2 CITF22-91B7 fin SC 101 100 0 yellow alignment length < 2000
BX284656.2 CITF22-91B7 fin SC AL050314.3 RP1-100G10 fin SC 100 100 0 yellow alignment length < 2000
AL050314.3 RP1-100G10 fin SC AL008720.1 CTA-343C1 fin SC 100 100 0 green  
AL008720.1 CTA-343C1 fin SC Z72006.1 LL22NC03-69F4 fin SC 104 99.038 0 yellow identity < 99.6%
Z72006.1 LL22NC03-69F4 fin SC Z82249.1 LL22NC03-4D6 fin SC 104 100 0 green  
Z82249.1 LL22NC03-4D6 fin SC AL078640.7 RP11-536P6 fin SC 104 100 0 green  
AL078640.7 RP11-536P6 fin SC Z84468.1 CTA-299D3 fin SC 101 100 0 green  
Z84468.1 CTA-299D3 fin SC AL096853.13 CITF22-96H12 fin SC 100 100 0 green  
AL096853.13 CITF22-96H12 fin SC CR391954.2 C010900614RC fin SC 1020 99.902 0 green  
CR391954.2 C010900614RC fin SC CR450365.4 F96S22 fin SC 518 100 0 yellow alignment length < 2000
CR450365.4 F96S22 fin SC CR456636.2 F96F65 fin SC 1979 99.950 0 green  
CR456636.2 F96F65 fin SC AL954745.16 CITF22-65C6 fin SC 689 100 0 yellow alignment length < 2000
AL954745.16 CITF22-65C6 fin SC AL096843.12 RP11-262A13 fin SC 1996 100 1 yellow alignment length < 2000
AL096843.12 RP11-262A13 fin SC Z83837.1 CITF22-113D11 fin SC 104 99.038 0 yellow identity < 99.6%; alignment length < 2000
Z83837.1 CITF22-113D11 fin SC Z83855.2 LL22NC03-104C4 fin SC 104 100 0 green  
Z83855.2 LL22NC03-104C4 fin SC AL078607.5 RP4-619N21 fin SC 100 100 0 green  
AL078607.5 RP4-619N21 fin SC AL954742.7 CITF22-114E11 fin SC 1999 99.850 1 green simple sequence in gap
AL954742.7 CITF22-114E11 fin SC BX324183.9 83857E1 fin SC 2000 99.850 0 green  
BX324183.9 83857E1 fin SC BX927063.6 CITF22-118E8 fin SC 2000 99.700 1 green  
BX927063.6 CITF22-118E8 fin SC BX324178.9 81516E3 fin SC 2000 99.800 1 green  
BX324178.9 81516E3 fin SC AL078613.11 RP11-354I12 fin SC 2000 99.950 0 green  
AL078613.11 RP11-354I12 fin SC AL078622.7 RP5-925J7 fin SC 100 100 0 yellow alignment length < 2000
AL078622.7 RP5-925J7 fin SC AL078632.6 RP11-255N20 fin SC 104 100 0 green  
AL078632.6 RP11-255N20 fin SC FP340309.1 RP5-1061O18 fin SC 104 100 0 yellow alignment length < 2000
FP340309.1 RP5-1061O18 fin SC Z94162.1 LL22NC03-21F1 fin SC 104 100 0 yellow alignment length < 2000
Z82202.1 RP1-34P24 fin SC Z82189.1 RP1-170A21 fin SC 100 100 0 green  
Z82189.1 RP1-170A21 fin SC AL008636.1 CTA-722E9 fin SC 104 100 0 green  
AL008636.1 CTA-722E9 fin SC AL031593.1 RP4-566L20 fin SC 100 100 0 green  
AL031593.1 RP4-566L20 fin SC Z97192.2 RP1-29C18 fin SC 100 100 0 green  
Z97192.2 RP1-29C18 fin SC AL023802.1 RP5-983L19 fin SC 100 100 0 green  
AL023802.1 RP5-983L19 fin SC Z98885.1 RP3-522J7 fin SC 100 100 0 green  
Z98885.1 RP3-522J7 fin SC AL117328.5 RP11-494O16 fin SC 100 100 0 green  
AL117328.5 RP11-494O16 fin SC AL671710.13 CITF22-1A6 fin SC 2976 99.731 2 green simple sequence in gap
AL671710.13 CITF22-1A6 fin SC BX539320.10 CITF22-49E9 fin SC 2000 100 0 green  
BX539320.10 CITF22-49E9 fin SC CR536608.3 CITF22-5B3 fin SC 2000 100 0 green  
CR536608.3 CITF22-5B3 fin SC CT009694.2 AA-70L fin SC 935 99.893 0 yellow alignment length < 2000
CT025869.2 AADA652C669L fin SC CT025559.1 AADA731B232L fin SC 164 100 0 yellow alignment length < 2000
CT025559.1 AADA731B232L fin SC AL022327.17 RP3-355C18 fin SC 310 99.677 0 yellow alignment length < 2000
AL022327.17 RP3-355C18 fin SC AL034546.5 RP5-898I4 fin SC 100 100 0 green  
AL034546.5 RP5-898I4 fin SC AL022328.21 RP3-402G11 fin SC 100 100 0 green  
AL022328.21 RP3-402G11 fin SC BX649592.2 80131G2 fin SC 841 98.692 0 yellow identity < 99.6%
BX649592.2 80131G2 fin SC CR790389.2 C004201334L fin SC 296 100 0 green  
CR790389.2 C004201334L fin SC CT010163.2 36887L fin SC 248 100 0 yellow alignment length < 2000
CT010163.2 36887L fin SC CR932344.3 C024601283L fin SC 163 100 0 yellow alignment length < 2000
CR932344.3 C024601283L fin SC CR559946.2 C283C717 fin SC 826 100 0 yellow alignment length < 2000
CR559946.2 C283C717 fin SC CR932343.3 C00717C00720L fin SC 597 99.832 0 yellow alignment length < 2000
CR932343.3 C00717C00720L fin SC CR759740.2 C018300720L fin SC 1296 99.846 0 green  
CR759740.2 C018300720L fin SC CT009622.1 AA-20C749L fin SC 1047 100 0 yellow alignment length < 2000
CT009622.1 AA-20C749L fin SC CU041238.2 AA-49AADD513L fin SC 103 100 0 yellow alignment length < 2000
CU041238.2 AA-49AADD513L fin SC CU074331.2 AA-DD513F116L fin SC 641 100 0 yellow alignment length < 2000
CU074331.2 AA-DD513F116L fin SC BX545851.6 CITF22-116F7 fin SC 1147 100 0 yellow alignment length < 2000
BX545851.6 CITF22-116F7 fin SC AL954743.9 CITF22-49G11 fin SC 2000 100 0 green  
AL954743.9 CITF22-49G11 fin SC AL671545.13 CITF22-53E7 fin SC 2000 100 0 green  
AL671545.13 CITF22-53E7 fin SC AL096767.14 RP4-579N16 fin SC 1999 99.950 1 green simple sequence in gap
AL096767.14 RP4-579N16 fin SC Z94802.1 CTA-999D10 fin SC 100 99.000 0 yellow identity < 99.6%
Z94802.1 CTA-999D10 fin SC U62317.2 CTA-384D8 unk TIGR 102 99.020 0 yellow identity < 99.6%; alignment length < 2000
U62317.2 CTA-384D8 unk TIGR Z82168.2 RP1-104C13 fin SC 100 100 0 yellow alignment length < 2000
Z82168.2 RP1-104C13 fin SC Z82245.1 CTA-799F10 fin SC 100 100 0 yellow alignment length < 2000
Z82245.1 CTA-799F10 fin SC AC000050.22 ? fin 97 100 0 green  
AC000050.22 ? fin AC000036.5 ? fin UOKNOR 8225 99.976 2 green  
AC000036.5 ? fin UOKNOR AC002056.1 ? fin UOKNOR 18417 100 0 green  
AC002056.1 ? fin UOKNOR AC002055.2 ? fin UOKNOR 1709 100 1 green