NCBI

Find a TPF

Join Legend: Click on the colored ball in the 'join' column to see alignment details.

tpf view for chr Y (reference)
acc name ctg center status join align length gaps % id comments
GAP TELOMERE 100000  
AC216019.1 RP24-153B17 MmchrY_ctg4 WUGSC top joinwhite 0 0 0 one or more unfinished sequences; no overlap present
AC215919.3 RP24-496J16 MmchrY_ctg4 WUGSC fin joinred 73508 182 99.532 >0 gap of 500bp or more, not simple sequence
AC212383.3 RP24-291C4 MmchrY_ctg4 WUGSC fin
GAP TYPE-3    
AC139318.5 RP24-498K8 MmchrY_ctg1 WUGSC fin joingreen 51921 0 100  
AC134433.3 RP24-405A4 MmchrY_ctg1 WUGSC fin joingreen 62550 0 100  
AC145392.2 RP24-171E5 MmchrY_ctg1 WUGSC fin joingreen 18837 0 100  
AC148319.2 RP24-540G19 MmchrY_ctg1 WUGSC fin joingreen 132013 2 99.999 simple sequence in gap
AC145571.3 RP24-450H18 MmchrY_ctg1 WUGSC fin joingreen 58917 1 100 simple sequence in gap
AC145393.4 RP24-208N6 MmchrY_ctg1 WUGSC fin joingreen 66015 0 100  
AC145592.3 RP24-335F16 MmchrY_ctg1 WUGSC fin joingreen 12314 0 100  
AC147550.5 RP24-173K5 MmchrY_ctg1 WUGSC fin joingreen 58436 21 99.981  
AC213372.3 RP24-249E11 MmchrY_ctg1 WUGSC fin joingreen 29992 6 99.983  
AC145578.5 RP24-108H11 MmchrY_ctg1 WUGSC fin joingreen 48227 3 100 simple sequence in gap
AC174221.4 RP24-237K1 MmchrY_ctg1 WUGSC fin joinred 101020 4 99.999 >0 gap of 500bp or more
AC148974.5 RP24-165K23 MmchrY_ctg1 WUGSC fin joingreen 77877 1 100 simple sequence in gap
AC161751.3 RP24-525E22 MmchrY_ctg1 WUGSC fin joingreen 79960 1 100 simple sequence in gap
AC163622.4 RP24-566G6 MmchrY_ctg1 WUGSC fin joingreen 70100 0 100  
AC151827.5 RP24-453P17 MmchrY_ctg1 WUGSC fin joingreen 96868 3 100 simple sequence in gap
AC142267.3 RP24-131K10 MmchrY_ctg1 WUGSC fin joingreen 57907 1 100 simple sequence in gap
AC154106.2 RP24-312B8 MmchrY_ctg1 WUGSC fin joinred 67643 1 100 certificate rejected; >0 gap of 50bp or more, not simple sequence
AC170870.2 RP24-303O21 MmchrY_ctg1 WUGSC fin joingreen 93185 3 100 simple sequence in gap
AC134524.5 RP24-496E20 MmchrY_ctg1 WUGSC fin joingreen 81138 5 99.999 simple sequence in gap
AC140408.3 RP24-92P14 MmchrY_ctg1 WUGSC fin
GAP TYPE-2    
AC141873.4 RP24-332J21 MmchrY_ctg1 WUGSC fin joinyellow 494 0 100 alignment length < 2000
AC132601.4 RP24-165F4 MmchrY_ctg1 WUGSC fin joinred 84277 57 99.766 >0 gap of 50bp or more, not simple sequence
AC130839.4 RP24-439L9 MmchrY_ctg1 WUGSC fin
GAP TYPE-3    
? RP24-463O5 MmchrY_ctg2  
AC192092.1 RP24-567P17 MmchrY_ctg2 WUGSC top joinwhite 0 0 0 one or more unfinished sequences; no overlap present
AC160968.4 RP24-418C24 MmchrY_ctg2 WUGSC fin joinwhite 0 0 0 alignment exists; one or more unfinished sequences; more than one overlap present
AC160975.2 RP24-84F20 MmchrY_ctg2 WUGSC act joinwhite 0 0 0 one or more unfinished sequences; no overlap present
AC163691.4 RP24-1D8 MmchrY_ctg2 WUGSC fin joinred 0 0 0 more than one overlap present
AC160967.4 RP24-385N6 MmchrY_ctg2 WUGSC fin joingreen 80150 1 100 simple sequence in gap
AC149585.7 RP24-316M20 MmchrY_ctg2 WUGSC fin joingreen 82069 1 99.999 simple sequence in gap
AC160971.4 RP24-567G7 MmchrY_ctg2 WUGSC fin joingreen 35344 0 100  
AC175459.3 RP24-110P17 MmchrY_ctg2 WUGSC fin joingreen 2001 0 100  
AC191597.2 RP24-146P3 MmchrY_ctg2 WUGSC fin joingreen 42024 1 100 simple sequence in gap
AC194787.4 RP24-326C5 MmchrY_ctg2 WUGSC fin joingreen 42940 1 100  
AC213374.4 CH36-396L14 MmchrY_ctg2 WUGSC fin
GAP TELOMERE 100000