Mouse Join View for chromsome Y

Find a TPF

Join Legend: Click on the colored ball in the 'join' column to see alignment details.

Serious alignment problem, requires review
Minor alignment problem
Excellent alignment

Certificate submitted, not yet approved
Certificate submitted and approved
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Join view for chr Y (reference)
acc1	clone1	clone1 status	clone1 center	acc2	clone2	clone2 status	clone2 center	align len	perc. id	gaps	comments
AC216019.1	RP24-153B17	top	WUGSC	AC215919.3	RP24-496J16	fin	WUGSC	0	0	0	one or more unfinished sequences; no overlap present
AC215919.3	RP24-496J16	fin	WUGSC	AC212383.3	RP24-291C4	fin	WUGSC	73508	99.532	182	>0 gap of 500bp or more, not simple sequence
AC139318.5	RP24-498K8	fin	WUGSC	AC134433.3	RP24-405A4	fin	WUGSC	51921	100	0
AC134433.3	RP24-405A4	fin	WUGSC	AC145392.2	RP24-171E5	fin	WUGSC	62550	100	0
AC145392.2	RP24-171E5	fin	WUGSC	AC148319.2	RP24-540G19	fin	WUGSC	18837	100	0
AC148319.2	RP24-540G19	fin	WUGSC	AC145571.3	RP24-450H18	fin	WUGSC	132013	99.999	2	simple sequence in gap
AC145571.3	RP24-450H18	fin	WUGSC	AC145393.4	RP24-208N6	fin	WUGSC	58917	100	1	simple sequence in gap
AC145393.4	RP24-208N6	fin	WUGSC	AC145592.3	RP24-335F16	fin	WUGSC	66015	100	0
AC145592.3	RP24-335F16	fin	WUGSC	AC147550.5	RP24-173K5	fin	WUGSC	12314	100	0
AC147550.5	RP24-173K5	fin	WUGSC	AC213372.3	RP24-249E11	fin	WUGSC	58436	99.981	21
AC213372.3	RP24-249E11	fin	WUGSC	AC145578.5	RP24-108H11	fin	WUGSC	29992	99.983	6
AC145578.5	RP24-108H11	fin	WUGSC	AC174221.4	RP24-237K1	fin	WUGSC	48227	100	3	simple sequence in gap
AC174221.4	RP24-237K1	fin	WUGSC	AC148974.5	RP24-165K23	fin	WUGSC	101020	99.999	4	>0 gap of 500bp or more
AC148974.5	RP24-165K23	fin	WUGSC	AC161751.3	RP24-525E22	fin	WUGSC	77877	100	1	simple sequence in gap
AC161751.3	RP24-525E22	fin	WUGSC	AC163622.4	RP24-566G6	fin	WUGSC	79960	100	1	simple sequence in gap
AC163622.4	RP24-566G6	fin	WUGSC	AC151827.5	RP24-453P17	fin	WUGSC	70100	100	0
AC151827.5	RP24-453P17	fin	WUGSC	AC142267.3	RP24-131K10	fin	WUGSC	96868	100	3	simple sequence in gap
AC142267.3	RP24-131K10	fin	WUGSC	AC154106.2	RP24-312B8	fin	WUGSC	57907	100	1	simple sequence in gap
AC154106.2	RP24-312B8	fin	WUGSC	AC170870.2	RP24-303O21	fin	WUGSC	67643	100	1	certificate rejected; >0 gap of 50bp or more, not simple sequence
AC170870.2	RP24-303O21	fin	WUGSC	AC134524.5	RP24-496E20	fin	WUGSC	93185	100	3	simple sequence in gap
AC134524.5	RP24-496E20	fin	WUGSC	AC140408.3	RP24-92P14	fin	WUGSC	81138	99.999	5	simple sequence in gap
AC141873.4	RP24-332J21	fin	WUGSC	AC132601.4	RP24-165F4	fin	WUGSC	494	100	0	alignment length < 2000
AC132601.4	RP24-165F4	fin	WUGSC	AC130839.4	RP24-439L9	fin	WUGSC	84277	99.766	57	>0 gap of 50bp or more, not simple sequence
AC192092.1	RP24-567P17	top	WUGSC	AC160968.4	RP24-418C24	fin	WUGSC	0	0	0	one or more unfinished sequences; no overlap present
AC160968.4	RP24-418C24	fin	WUGSC	AC160975.2	RP24-84F20	act	WUGSC	0	0	0	alignment exists; one or more unfinished sequences; more than one overlap present
AC160975.2	RP24-84F20	act	WUGSC	AC163691.4	RP24-1D8	fin	WUGSC	0	0	0	one or more unfinished sequences; no overlap present
AC163691.4	RP24-1D8	fin	WUGSC	AC160967.4	RP24-385N6	fin	WUGSC	0	0	0	more than one overlap present
AC160967.4	RP24-385N6	fin	WUGSC	AC149585.7	RP24-316M20	fin	WUGSC	80150	100	1	simple sequence in gap
AC149585.7	RP24-316M20	fin	WUGSC	AC160971.4	RP24-567G7	fin	WUGSC	82069	99.999	1	simple sequence in gap
AC160971.4	RP24-567G7	fin	WUGSC	AC175459.3	RP24-110P17	fin	WUGSC	35344	100	0
AC175459.3	RP24-110P17	fin	WUGSC	AC191597.2	RP24-146P3	fin	WUGSC	2001	100	0
AC191597.2	RP24-146P3	fin	WUGSC	AC194787.4	RP24-326C5	fin	WUGSC	42024	100	1	simple sequence in gap
AC194787.4	RP24-326C5	fin	WUGSC	AC213374.4	CH36-396L14	fin	WUGSC	42940	100	1

NCBI