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Current tiling path for human chromosome 9

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TPF revision information

Last updated:
December 9, 2013 at 5:52 PM Eastern Time
By:
NCBI(schneiva)
Version:
92

Patches and alternate loci

  • Purple cell with +P icon: patch component
  • Orange cell with +A icon: alt loci component

Join legend

  • Red circleSerious alignment problem, requires review
  • Yellow circleMinor alignment problem
  • Green circleExcellent alignment, meets all defined criteria
  • Black circleCertificate submitted, not yet approved
  • Purple circleCertificate submitted and approved
  • Grey circleValid, contained clone
  • White circleJoin not evaluated due to one accession not being finished
Current tiling path for human chromosome 9 (v. 92):
Accession Name Contig Center Status Join Align length Gaps Percent identical Comments
GAP TELOMERE 10000
AL928970.15 HTY-2039 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL449043.16 RP11-143M1 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL356244.13 RP11-174M15 HSCHR9_CTG1 SC fin joinyellow 1,000 0 99.400 identity < 99.6%; alignment length < 2000
AL158832.13 RP11-59O6 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL161725.13 RP11-165F24 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL392089.7 RP11-31F19 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL136979.16 RP11-130C19 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL136365.9 RP11-143M15 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL358976.11 RP11-147I11 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591474.6 RP11-318K7 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL356498.10 RP11-341G2 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL358934.19 RP11-459D20 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353696.8 RP11-560G8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL358053.31 RP11-415J4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL356284.11 RP11-438E12 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL353590.14 RP11-420P23 HSCHR9_CTG1 SC fin joingreen 1,999 1 99.900 simple sequence in gap
AL591644.14 RP11-443B9 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL359076.16 RP11-264I13 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL138755.13 RP11-48M17 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF458891.1 ? HSCHR9_CTG1 CONTAINED in AL138755.13 unk joinyellow 275 0 99.636 alignment length < 2000
AL353667.10 RP11-125B21 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353614.9 RP11-91N2 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
   KF458890.1 ? HSCHR9_CTG1 CONTAINED in AL353614.9 unk joinyellow 385 0 99.740 alignment length < 2000
AL450467.8 RP11-320E16 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354723.17 RP11-526D20 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL589675.5 RP11-255J3 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL359077.10 RP11-176B4 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL133549.11 RP11-32F11 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354941.10 RP11-62E14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL603631.6 RP11-350P8 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL365202.19 RP11-326A8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354977.10 RP11-509J21 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353577.22 RP11-661K19 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL137071.22 RP11-252M18 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL158012.14 RP11-157A10 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL359095.17 RP11-70J12 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.800
AL133283.9 RP11-31M2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458892.1 ? HSCHR9_CTG1 CONTAINED in AL133283.9 unk joinyellow 233 0 99.571 identity < 99.6%; alignment length < 2000
   KF458894.1 ? HSCHR9_CTG1 CONTAINED in AL133283.9 unk joinyellow 385 0 99.740 alignment length < 2000
AL162419.34 RP11-358M14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162587.20 RP11-280I16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL136231.12 RP11-6J24 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.850 simple sequence in gap
   KF458893.1 ? HSCHR9_CTG1 CONTAINED in AL136231.12 unk joinyellow 383 0 99.739 alignment length < 2000
AL353151.26 RP11-307I14 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL158147.17 RP11-125K10 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL513350.9 RP11-509D8 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL161450.14 RP11-39K24 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL133547.16 RP11-140C18 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL135786.17 RP11-12D24 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL162253.17 RP11-574F11 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF458896.1 ? HSCHR9_CTG1 CONTAINED in AL162253.17 unk joinyellow 384 0 99.740 alignment length < 2000
   KF458895.1 ? HSCHR9_CTG1 CONTAINED in AL162253.17 unk joinyellow 396 0 99.747 alignment length < 2000
AL354744.13 RP11-635N21 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL136980.5 RP11-207C16 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL365360.9 RP11-546N22 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353606.12 RP11-165O14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162384.14 RP11-218I7 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL353741.16 RP11-575C20 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL360221.12 RP11-279E1 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL133480.9 RP11-307L3 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL353718.10 RP11-472F14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162411.23 RP11-106A1 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354707.17 RP11-390F4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL445592.15 RP11-660M15 HSCHR9_CTG1 SC fin joingreen 40,976 0 100
AL513412.3 RP11-403H13 HSCHR9_CTG1 GBF fin joingreen 2,000 0 100
AL137020.14 RP11-146B14 HSCHR9_CTG1 SC fin joinyellow 100 0 100 alignment length < 2000
AL161443.13 RP11-169L18 HSCHR9_CTG1 SC fin joingreen 1,996 2 99.950 simple sequence in gap
AL513313.6 RP11-244O6 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL157703.14 RP11-79K3 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.750 simple sequence in gap
+A AL391872.7 RP11-87M1 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF458900.1 ? HSCHR9_CTG1 CONTAINED in AL391872.7 unk joinyellow 153 0 99.346 identity < 99.6%; alignment length < 2000
AL591509.5 RP11-366I21 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL354694.18 RP11-77E14 HSCHR9_CTG1 SC fin joingreen 99 0 100
AL391983.6 RP11-203F16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL135923.15 RP11-29B9 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF458901.1 ? HSCHR9_CTG1 CONTAINED in AL135923.15 unk joinyellow 385 0 99.740 alignment length < 2000
AL135788.11 RP11-352G21 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL357773.15 RP11-228D23 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL445926.5 RP11-439I6 HSCHR9_CTG1 SC fin joingreen 110,227 0 100
AL590397.7 RP11-376O21 HSCHR9_CTG1 SC fin joingreen 12,416 0 100
AL137125.7 RP11-175E13 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL356584.21 RP11-60C15 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL583805.7 RP11-134K1 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL451130.8 RP11-10G21 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.700 simple sequence in gap
AL669908.2 RP11-13N19 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL596451.4 RP11-75C9 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353638.15 RP11-338L20 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591133.7 RP11-12I16 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591622.6 RP11-141L16 HSCHR9_CTG1 SC fin joingreen 1,999 1 99.650
AL354722.10 RP11-744O14 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353733.14 RP11-143N16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL157826.8 RP11-176P17 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL391864.13 RP11-378H16 HSCHR9_CTG1 SC fin joingreen 26,761 5 99.866 simple sequence in gap
AL513422.2 RP11-527D15 HSCHR9_CTG1 GBF fin joinpurple 100,620 61 99.712 approved certificate; >0 gap of 50bp or more, not simple sequence
AL137851.12 RP11-6H18 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL441884.5 RP11-19A22 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL390723.21 RP11-19G1 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL133479.11 RP11-299F23 HSCHR9_CTG1 SC fin joinyellow 1,994 4 99.549 identity < 99.6%
AL590307.3 RP11-321D10 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL137069.15 RP11-167C5 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458903.1 ? HSCHR9_CTG1 CONTAINED in AL137069.15 unk joinyellow 107 0 99.065 identity < 99.6%; alignment length < 2000
AL356054.25 RP11-50C21 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.700
AL135790.7 RP11-87N24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL513024.9 RP11-555B19 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL161788.13 RP11-421B23 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162413.26 RP11-109M17 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354952.12 RP11-536I1 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354992.7 RP11-293A1 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL451129.6 RP11-23D5 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL355672.12 RP11-165C19 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL445586.6 RP11-352F21 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL592227.4 RP11-32D4 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.750
AL513332.9 RP11-58B8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL512596.6 RP11-158N20 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353595.9 RP11-81P8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL596262.3 RP11-493O12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL589678.9 RP11-74C3 HSCHR9_CTG1 SC fin joingreen 1,998 1 100
AL357772.15 RP11-71E22 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162422.10 RP11-446F13 HSCHR9_CTG1 SC fin joinyellow 1,992 3 99.598 identity < 99.6%
AL353605.12 RP11-364M22 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL139114.12 RP11-328C23 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL138753.8 RP11-3L8 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF511085.1 ? HSCHR9_CTG1 CONTAINED in AL138753.8 fin joinyellow 343 1 100 alignment length < 2000
AL157828.14 RP11-214I20 HSCHR9_CTG1 SC fin joinyellow 1,999 2 99.550 identity < 99.6%
AL353711.13 RP11-187K14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL161449.7 RP11-382H24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458902.1 ? HSCHR9_CTG1 CONTAINED in AL161449.7 unk joinyellow 297 0 99.663 alignment length < 2000
AL353639.10 RP11-664D14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162386.17 RP11-272P10 HSCHR9_CTG1 SC fin joingreen 61,251 8 99.925 simple sequence in gap
   KF458899.1 ? HSCHR9_CTG1 CONTAINED in AL162386.17 unk joinyellow 383 0 99.739 alignment length < 2000
AL583785.2 RP11-536O18 HSCHR9_CTG1 GBF fin joingreen 77,819 1 100 simple sequence in gap
AL354948.7 RP11-378F20 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458897.1 ? HSCHR9_CTG1 CONTAINED in AL354948.7 unk joinyellow 231 0 99.567 identity < 99.6%; alignment length < 2000
AL138750.12 RP11-311A12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353810.9 RP11-261H15 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL158157.8 RP11-413D24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL691508.8 RP11-549I12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL360089.13 RP11-284P20 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL441963.7 RP11-280O24 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL449443.10 RP11-54D21 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL136366.24 RP11-413C16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL137017.9 RP11-120J1 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF511086.1 ? HSCHR9_CTG1 CONTAINED in AL137017.9 fin joinyellow 387 1 100 alignment length < 2000
AL159169.14 RP11-408A13 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF458906.1 ? HSCHR9_CTG1 CONTAINED in AL159169.14 unk joinyellow 264 0 99.621 alignment length < 2000
AL390732.10 RP11-439N12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL512643.9 RP11-265B7 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL354672.27 RP11-476C9 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL592293.7 RP11-54D18 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.700 simple sequence in gap
AL390958.15 RP11-271D19 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.850
AL591393.10 RP11-224J22 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL390246.17 RP11-490C5 HSCHR9_CTG1 SC fin joingreen 1,996 1 99.649 simple sequence in gap
AL441925.16 RP11-307K19 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL359998.21 RP11-211N10 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL513423.3 RP11-518K17 HSCHR9_CTG1 GBF fin joingreen 2,000 0 99.900
AL662788.7 RP11-778P13 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL359877.12 RP11-179A4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL592153.6 RP11-58K1 HSCHR9_CTG1 SC fin joingreen 52,287 8 99.870 simple sequence in gap
AL160053.15 RP11-536D16 HSCHR9_CTG1 SC fin joingreen 30,621 0 100
AL513424.3 RP11-109M15 HSCHR9_CTG1 GBF fin joingreen 120,880 0 99.999
AL449344.5 RP11-280L17 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.850
AL646003.5 RP11-562J19 HSCHR9_CTG1 SC fin joinyellow 1,999 2 99.900 alignment length < 2000
AL449983.2 RP11-183I6 HSCHR9_CTG1 GBF fin joingreen 18,676 0 99.995
   KF458907.1 ? HSCHR9_CTG1 CONTAINED in AL449983.2 unk joinyellow 392 0 99.745 alignment length < 2000
AL450003.2 RP11-62F24 HSCHR9_CTG1 GBF fin joingreen 2,000 0 100
AL162418.17 RP11-335H2 HSCHR9_CTG1 SC fin joingreen 1,989 1 99.799 simple sequence in gap
AL450105.17 RP11-519C17 HSCHR9_CTG1 SC fin joingreen 2,000 1 100 simple sequence in gap
AL358117.11 RP11-325K2 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL162725.10 RP11-132E11 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354711.24 RP11-340N12 HSCHR9_CTG1 SC fin joingreen 2,000 3 99.650 simple sequence in gap
AL354738.13 RP11-628O6 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL590377.4 RP11-492A12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL133214.12 RP11-163F8 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL139115.5 RP11-335L15 HSCHR9_CTG1 SC fin joingreen 2,000 2 99.950 simple sequence in gap
AL645565.3 RP11-397M22 HSCHR9_CTG1 SC fin joingreen 94,782 0 100
AL513502.3 RP11-123J20 HSCHR9_CTG1 GBF fin joingreen 92,451 19 99.784 simple sequence in gap
AL450004.4 RP11-520K3 HSCHR9_CTG1 GBF fin joingreen 78,417 3 99.992 simple sequence in gap
AL513503.2 RP11-297A17 HSCHR9_CTG1 GBF fin joingreen 68,323 0 100
AL512664.8 RP11-1A10 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL445674.12 RP11-477L5 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL442638.3 RP11-570H19 HSCHR9_CTG1 GBF fin joingreen 62,827 3 99.986 simple sequence in gap
AL449963.2 RP11-399M15 HSCHR9_CTG1 GBF fin joingreen 92,463 16 99.916 simple sequence in gap
AL353895.4 RP11-503K16 HSCHR9_CTG1 SC fin joinyellow 979 0 99.898 alignment length < 2000
AL591423.7 RP11-134P18 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL158150.14 RP11-220B22 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL356000.13 RP11-296P7 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591206.9 RP11-151J10 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.850
AL161909.20 RP11-146N23 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL391834.8 RP11-513M16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL158206.8 RP11-363E7 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL133281.12 RP11-252O2 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.900
AL158077.15 RP11-471J7 HSCHR9_CTG1 SC fin joingreen 33,410 0 100
AL591222.2 RP11-378I6 HSCHR9_CTG1 GBF fin joingreen 2,000 0 100
AL731856.14 RP11-647P3 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL445595.6 RP11-594J14 HSCHR9_CTG1 GBF fin joingreen 53,155 5 99.930 simple sequence in gap
AL512635.8 RP11-15P13 HSCHR9_CTG1 SC fin joingreen 29,126 0 100
AL513498.2 RP11-336O12 HSCHR9_CTG1 GBF fin joingreen 56,286 0 100
AL163193.5 RP11-73E6 HSCHR9_CTG1 GBF fin joingreen 2,000 0 100
   KF510325.1 ? HSCHR9_CTG1 CONTAINED in AL163193.5 unk joinyellow 387 1 100 alignment length < 2000
AL627410.9 RP11-518A6 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354879.12 RP11-4E23 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL445624.3 RP11-512L9 HSCHR9_CTG1 GBF fin joingreen 73,348 0 100
   KF458909.1 ? HSCHR9_CTG1 CONTAINED in AL445624.3 unk joinyellow 148 0 99.324 identity < 99.6%; alignment length < 2000
AL392163.8 RP11-43M11 HSCHR9_CTG1 SC fin joingreen 38,470 12 99.844 simple sequence in gap
AL662879.5 RP11-279F22 HSCHR9_CTG1 GBF fin joingreen 69,997 1 100 simple sequence in gap
AL390882.12 RP11-113D19 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL512606.6 RP11-1P8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162420.13 RP11-380P16 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL353732.14 RP11-354P17 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL137022.8 RP11-344A7 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL355679.20 RP11-473O3 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL359922.10 RP11-70L8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL449423.14 RP11-149I2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354709.15 RP11-145E5 HSCHR9_CTG1 SC fin joingreen 100 0 100
   KF458910.2 ? HSCHR9_CTG1 CONTAINED in AL354709.15 fin joinyellow 404 0 99.752 alignment length < 2000
AL157937.21 RP11-408N14 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL161730.9 RP11-441I5 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL583802.5 RP11-11J1 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL603704.9 RP11-512M18 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.700
AC017067.4 RP11-370B11 HSCHR9_CTG1 WUGSC fin joingreen 2,000 0 99.950
   KF458905.1 ? HSCHR9_CTG1 CONTAINED in AC017067.4 unk joinyellow 331 0 99.698 alignment length < 2000
   KF454916.1 ? HSCHR9_CTG1 CONTAINED in AC017067.4 unk joinyellow 501 0 99.601 alignment length < 2000
AL645734.1 RP11-399D6 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL391117.8 RP11-103B9 HSCHR9_CTG1 SC fin joingreen 32,785 0 100
AL357615.7 RP11-373D10 HSCHR9_CTG1 GBF fin joingreen 29,298 13 99.782 simple sequence in gap
   KF458904.1 ? HSCHR9_CTG1 CONTAINED in AL357615.7 unk joinyellow 387 0 99.742 alignment length < 2000
   KF511087.1 ? HSCHR9_CTG1 CONTAINED in AL357615.7 fin joinyellow 150 1 100 alignment length < 2000
AL357614.5 RP11-367B10 HSCHR9_CTG1 GBF fin joingreen 55,645 0 99.996
AL163528.8 RP11-109K15 HSCHR9_CTG1 GBF fin joingreen 85,183 5 99.996 simple sequence in gap
   KF458908.1 ? HSCHR9_CTG1 CONTAINED in AL163528.8 unk joinyellow 387 0 99.742 alignment length < 2000
AL442637.4 RP11-495L19 HSCHR9_CTG1 GBF fin joingreen 43,300 0 100
AL445623.2 RP11-315I14 HSCHR9_CTG1 GBF fin joingreen 73,044 2 100 simple sequence in gap
   KF458912.1 ? HSCHR9_CTG1 CONTAINED in AL445623.2 unk joinyellow 382 0 99.738 alignment length < 2000
   KF458911.1 ? HSCHR9_CTG1 CONTAINED in AL445623.2 unk joinyellow 385 0 99.740 alignment length < 2000
AL161628.9 RP11-31K16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL365204.11 RP11-321L2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458913.1 ? HSCHR9_CTG1 CONTAINED in AL365204.11 unk joinyellow 379 0 99.736 alignment length < 2000
AL513317.11 RP11-393P6 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458914.1 ? HSCHR9_CTG1 CONTAINED in AL513317.11 unk joinyellow 410 0 99.756 alignment length < 2000
AL354777.16 RP11-33K8 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL161724.10 RP11-114E4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL445241.8 RP11-217O24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL441928.12 RP11-509A6 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162232.14 RP11-20A20 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL353811.12 RP11-482I10 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL513333.10 RP11-326P5 HSCHR9_CTG1 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL157830.10 RP11-332M12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF458918.1 ? HSCHR9_CTG1 CONTAINED in AL157830.10 unk joinyellow 387 0 99.742 alignment length < 2000
AL355975.10 RP11-468C2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL627260.7 RP11-153E4 HSCHR9_CTG1 SC fin joinyellow 1,940 6 99.536 identity < 99.6%
AL353772.14 RP11-465H8 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL158074.18 RP11-330J23 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353730.13 RP11-55P9 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL590322.4 RP11-536F2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL391475.7 RP11-33G16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL391649.8 RP11-202E10 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353753.6 RP11-477G9 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL356791.9 RP11-80I3 HSCHR9_CTG1 SC fin joingreen 1,998 1 99.900 simple sequence in gap
AL592226.8 RP11-16P12 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL356156.14 RP11-351L5 HSCHR9_CTG1 SC fin joingreen 65,600 11 99.913 simple sequence in gap
AL590078.2 RP11-381K22 HSCHR9_CTG1 GBF fin joingreen 39,400 2 100
AL442639.2 RP11-5P15 HSCHR9_CTG1 GBF fin joingreen 56,107 0 99.998
AL451137.8 RP11-18A15 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL356133.17 RP11-337A23 HSCHR9_CTG1 SC fin joingreen 35,373 0 100
AL355432.7 RP11-56F10 HSCHR9_CTG1 GBF fin joingreen 91,392 26 99.905 simple sequence in gap
AL355433.6 RP11-179D22 HSCHR9_CTG1 GBF fin joinyellow 2,000 1 99.550 identity < 99.6%
AL133411.9 RP11-57P14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL163192.6 RP11-298E2 HSCHR9_CTG1 GBF fin joingreen 2,000 0 100
AL451123.12 RP11-27J8 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL355585.15 RP11-535I8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162396.18 RP11-82P9 HSCHR9_CTG1 SC fin joinyellow 2,000 1 99.500 identity < 99.6%
AL360014.30 RP11-575I8 HSCHR9_CTG1 SC fin joingreen 1,999 1 99.850 simple sequence in gap
AL353746.6 RP11-438B23 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.900
AL451124.13 RP11-20P5 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL596323.10 RP11-83O12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353683.7 RP11-450P11 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL445526.9 RP11-32I2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL592206.5 RP11-301H18 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL450428.6 RP11-264J11 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL158072.9 RP11-30O14 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL354758.14 RP11-29P12 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL360180.7 RP11-262O11 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL162388.8 RP11-373A6 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353684.8 RP11-275A14 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL138893.5 RP11-159L16 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL354676.10 RP11-48L13 HSCHR9_CTG1 SC fin joingreen 1,597 0 99.937
AL513132.6 RP11-460C6 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL590672.14 CTD-2609B1 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.700 simple sequence in gap
AL451045.14 RP11-549E17 HSCHR9_CTG1 SC fin joingreen 1,999 2 99.850 simple sequence in gap
AL392110.12 RP11-29M23 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL390883.13 RP11-230N22 HSCHR9_CTG1 SC fin joinyellow 1,999 1 99.600 identity < 99.6%
AL159995.8 RP11-2G13 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353808.14 RP11-152M16 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354704.17 RP11-630H9 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL390844.12 RP11-255N24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL590726.9 RP11-441F11 HSCHR9_CTG1 SC fin joingreen 1,980 2 99.849 simple sequence in gap
AL353735.12 RP11-98O11 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353745.7 RP11-560D2 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL355582.8 RP11-69L15 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354854.8 RP11-572H4 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL353783.14 RP11-271O3 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL162728.20 RP11-206B24 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.700
AL590676.11 RP11-291J9 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL731815.4 RP11-198O10 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353728.8 RP11-402B2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL160407.12 RP11-572G24 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL161444.18 RP11-312C2 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL451138.5 RP11-152H3 HSCHR9_CTG1 SC fin joinyellow 2,000 0 99.500 identity < 99.6%
AL589825.8 RP11-12K1 HSCHR9_CTG1 SC fin joingreen 1,997 1 99.800
AL513167.18 RP11-79E21 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353573.10 RP11-550E18 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL161783.20 RP11-334P12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353671.6 RP11-205M20 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL589642.6 RP11-555J4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL157884.9 RP11-462B18 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353717.13 RP11-562M8 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.950 simple sequence in gap
AL162590.15 RP11-54K16 HSCHR9_CTG1 SC fin joingreen 1,994 2 99.950 simple sequence in gap
AL161445.10 RP11-326F20 HSCHR9_CTG1 SC fin joingreen 1,995 3 100 simple sequence in gap
AL356472.17 RP11-344B24 HSCHR9_CTG1 SC fin joingreen 2,000 1 100 simple sequence in gap
AL356218.22 RP11-311H10 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.850
AL139008.10 RP11-255A11 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL356489.14 RP11-384P7 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL358573.25 RP11-133O22 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.800
AL139113.21 RP11-176F3 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.950 simple sequence in gap
AL354989.13 RP11-537H15 HSCHR9_CTG1 SC fin joingreen 1,000 0 100
AL160051.22 RP11-499G9 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.750
AL353662.19 RP11-571F15 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL356494.13 RP11-573M23 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   AMYH02019445.1 ? HSCHR9_CTG1 CONTAINED in AL356494.13 wgs joinyellow 40,225 9 99.925 >0 gap of 25bp or more, not simple sequence
AL160270.19 RP11-296L22 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
   KF511089.1 ? HSCHR9_CTG1 CONTAINED in AL160270.19 fin joinyellow 367 1 100 alignment length < 2000
AL450283.16 RP11-443P11 HSCHR9_CTG1 SC fin joingreen 1,996 2 99.850 simple sequence in gap
AL162231.20 RP11-195F19 HSCHR9_CTG1 SC fin joinyellow 1,992 0 99.900 half-dovetail of >0bp and <=50bp
AL589645.10 RP11-251H13 HSCHR9_CTG1 SC fin joingreen 1,984 1 99.849 simple sequence in gap
AL355377.25 RP11-392A14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL353795.13 RP11-182N22 HSCHR9_CTG1 SC fin joingreen 71,909 0 100
AL354669.12 RP11-201P13 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL160274.9 RP11-395N21 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL592145.4 RP11-55D5 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL133476.17 RP11-156G14 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL357874.13 RP11-331F9 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL133410.32 RP11-112J3 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL135841.11 RP11-327L3 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL138834.28 RP11-113A10 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL158830.17 RP11-421H8 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL161792.29 RP11-84P7 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL354935.23 RP11-117L14 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL354932.26 RP11-117L21 HSCHR9_CTG1 SC fin joingreen 2,000 2 99.850 simple sequence in gap
   KF458917.1 ? HSCHR9_CTG1 CONTAINED in AL354932.26 unk joinyellow 387 0 99.742 alignment length < 2000
AL442063.8 RP11-8N6 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.800
   KF458916.1 ? HSCHR9_CTG1 CONTAINED in AL442063.8 unk joinyellow 367 0 99.728 alignment length < 2000
AL450267.10 RP11-344B23 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL161781.12 RP11-297B17 HSCHR9_CTG1 SC fin joingreen 2,000 2 99.750 simple sequence in gap
AL603912.6 RP11-465M18 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL512604.14 RP11-220I1 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL358118.11 RP11-558N17 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL158155.24 RP11-397D12 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL158156.7 RP11-405L18 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL513165.12 RP11-613M10 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591470.12 RP11-263I4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL138752.5 RP11-3J10 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
   KF459922.1 ? HSCHR9_CTG1 CONTAINED in AL138752.5 unk joinyellow 337 0 99.703 alignment length < 2000
AL583849.10 RP11-376F21 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.650
AL161448.16 RP11-381H12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL445986.14 RP11-310F24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL135785.10 RP11-113O24 HSCHR9_CTG1 SC fin joingreen 100 0 100
AL390794.14 RP11-403F21 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.800
AL390726.19 RP11-392E22 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591543.22 RP13-198D9 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.900 simple sequence in gap
   KF458915.1 ? HSCHR9_CTG1 CONTAINED in AL591543.22 unk joinyellow 369 0 99.729 alignment length < 2000
AL845311.9 RP11-402N8 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL953883.5 RP11-246P17 HSCHR9_CTG1 SC fin joinyellow 1,995 2 98.396 identity < 99.6%; alignment length < 2000
AL353729.17 RP11-290L7 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.950
AL162501.11 RP11-138L21 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
BX005214.7 RP11-347J14 HSCHR9_CTG1 SC fin joinred 91,716 41 99.775 >2 gap of 25bp or more, not simple sequence
AL954139.7 RP11-100J16 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
BX005209.7 RP11-448C16 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
BX296545.5 RP11-45O22 HSCHR9_CTG1 SC fin joingreen 16,252 0 100
BX664615.10 RP11-104G3 HSCHR9_CTG1 SC fin joingreen 41,850 0 100
CR769767.5 RP11-204M4 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL772307.16 RP11-416B15 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.700
AL773545.13 RP11-216M21 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
BX664727.7 RP11-146D12 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL591471.8 RP11-341A11 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.800
FP885919.2 ABC12-47964100C23 HSCHR9_CTG1 SC fin joinred 10,790 13 99.222 half-dovetail of >50bp
AMYH02020865.1 ? HSCHR9_CTG1 None wgs
   GAP TYPE-2 10 PAIRED ENDS
AMYH02020866.1 ? HSCHR9_CTG1 None wgs
   GAP TYPE-2 82 PAIRED ENDS
AMYH02020867.1 ? HSCHR9_CTG1 None wgs
   GAP TYPE-2 10 PAIRED ENDS
AMYH02020868.1 ? HSCHR9_CTG1 None wgs
   GAP TYPE-2 10 PAIRED ENDS
FP325318.4 CH17-80A12 HSCHR9_CTG1 SC fin joingreen 21,547 2 99.916
AL353626.5 RP11-318K12 HSCHR9_CTG1 SC fin joinyellow 1,536 0 99.674 alignment length < 2000
   KF458920.1 ? HSCHR9_CTG1 CONTAINED in AL353626.5 unk joinyellow 392 0 99.745 alignment length < 2000
FP565210.13 CH17-358L14 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.800
AL353763.14 RP11-87H9 HSCHR9_CTG1 SC fin joingreen 47,169 0 100
BX255923.13 RP11-115J7 HSCHR9_CTG1 SC fin joingreen 2,000 1 99.750
FQ976904.3 WI2-2880P18 HSCHR9_CTG1 SC fin
   GAP TYPE-2 3392 ALIGN GENUS
ABBA01008941.1 ? HSCHR9_CTG1 None wgs
   GAP TYPE-2 752 PAIRED ENDS
ABBA01008942.1 ? HSCHR9_CTG1 None wgs
   FP325320.5 CH17-63E20 HSCHR9_CTG1 CONTAINED_TURNOUT in ABBA01008942.1 fin joinred 442 0 97.511 identity < 98%
AL845472.3 RP11-4L24 HSCHR9_CTG1 SC fin joingreen 2,000 0 100
AL354718.10 RP11-187C18 HSCHR9_CTG1 SC fin joingreen 86,726 38 99.887
CR788264.3 RP11-436G20 HSCHR9_CTG1 SC fin joingreen 2,558 0 100
AL591926.8 RP11-157L3 HSCHR9_CTG1 SC fin joinred 151,653 59 99.757 >0 gap of 500bp or more, not simple sequence
AL162731.33 RP11-292F9 HSCHR9_CTG1 SC fin joinyellow 13,865 32 98.796 identity < 99.6%
AL953854.21 RP11-211P14 HSCHR9_CTG1 SC fin joingreen 44,246 29 99.656
CR788268.5 RP11-24B13 HSCHR9_CTG1 SC fin joingreen 23,962 0 100
BX649569.5 RP11-204I2 HSCHR9_CTG1 SC fin joingreen 14,813 0 100
AL445584.16 RP11-366N18 HSCHR9_CTG1 SC fin joinred 45,134 87 98.950 >0 gap of 500bp or more, not simple sequence
AL162415.16 RP11-286O1 HSCHR9_CTG1 SC fin joingreen 1,535 0 100
BX088651.9 RP11-475I24 HSCHR9_CTG1 SC fin joingreen 3,133 0 100
BX664718.7 RP11-175I6 HSCHR9_CTG1 SC fin joingreen 5,350 0 99.981
CR848007.6 RP11-115C9 HSCHR9_CTG1 SC fin joingreen 60,633 5 99.937
AL591441.11 RP11-459O16 HSCHR9_CTG1 SC fin joingreen 2,000 0 99.900
FP325317.7 CH17-469D17 HSCHR9_CTG1 SC fin
   GAP type-3 14000 ALIGN GENUS
GAP CENTROMERE_DATA_START
   ABBA01045075.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 20 PAIRED ENDS
   ABBA01045074.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 20 PAIRED ENDS
   ABBA01045073.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 530 PAIRED ENDS
   ABBA01045072.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 20 PAIRED ENDS
   ABBA01045071.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 3991 PAIRED ENDS
   ABBA01045070.1 ? CEN9_1 PLUS wgs
   GAP TYPE-2 209 PAIRED ENDS
   ABBA01045069.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 1633 PAIRED ENDS
   ABBA01045068.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 1095 PAIRED ENDS
   ABBA01045067.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 920 PAIRED ENDS
   ABBA01045066.1 ? CEN9_1 MINUS wgs
   GAP TYPE-2 4826 PAIRED ENDS
   ABBA01045065.1 ? CEN9_1 MINUS wgs
   GAP TYPE-3 100 ALIGN GENUS
GJ211929.1 ? CEN9_2 None wgs
GAP CENTROMERE_DATA_END
GAP HETEROCHROMATIN 15000000
BX088702.10 RP11-49E18 HSCHR9_CTG5 SC fin
GAP type-3
FO082812.5 ABC13-48714300I24 HSCHR9_CTG6 SC fin
GAP type-3
AL590491.13 RP11-144A16 HSCHR9_CTG7 SC fin
GAP TYPE-3
FQ976901.4 WI2-2226I24 HSCHR9_CTG9 SC fin joingreen 2,000 0 100
BX005040.12 RP11-101E5 HSCHR9_CTG9 SC fin
GAP type-3
BX088645.7 RP11-74L19 HSCHR9_CTG10 SC fin joingreen 2,000 0 99.950
FP700059.5 CH17-296N19 HSCHR9_CTG10 SC fin
GAP TYPE-3
AL935212.11 RP11-160N1 HSCHR9_CTG10_2 SC fin joinyellow 1,997 2 99.900 alignment length < 2000
FQ976897.3 WI2-1691N7 HSCHR9_CTG10_2 SC fin
GAP TYPE-3
FQ976905.3 WI2-3033F22 HSCHR9_CTG10_1 SC fin joingreen 2,000 0 99.600
AL391987.15 RP11-374M1 HSCHR9_CTG10_1 SC fin joingreen 79,601 1 100 simple sequence in gap
CR769775.11 RP11-449H15 HSCHR9_CTG10_1 SC fin joingreen 2,000 0 99.950
FP885912.2 ABC9-44043700N4 HSCHR9_CTG10_1 SC fin
GAP type-3
FO082824.2 RP11-119F15 HSCHR9_CTG17 SC pre joinwhite 0 0 0 one or more unfinished sequences; no overlap present
AL590399.4 RP11-111F5 HSCHR9_CTG17 SC fin joingreen 2,000 0 100
BX664725.10 RP11-96J15 HSCHR9_CTG17 SC fin joingreen 17,699 0 100
BX005266.6 RP11-211N8 HSCHR9_CTG17 SC fin joingreen 16,061 0 100
BX664724.8 RP11-259A5 HSCHR9_CTG17 SC fin
GAP TYPE-3
AL512625.10 RP11-262H14 HSCHR9_CTG21_2 SC fin
GAP type-3
AL591379.18 RP11-381O7 HSCHR9_CTG21_3 SC fin
GAP TYPE-2
AL845321.4 RP11-236F9 HSCHR9_CTG21_3 SC fin joinred 64,273 285 99.476 >0 gap of 500bp or more
FO203515.7 RP11-366F14 HSCHR9_CTG21_3 SC fin
GAP type-3
AL591438.6 RP11-452D2 HSCHR9_CTG28 SC fin joingreen 105,130 13 99.952 simple sequence in gap
AL772155.6 RP11-149F8 HSCHR9_CTG28 SC fin joingreen 50,310 0 100
CR786580.6 RP11-764K9 HSCHR9_CTG28 SC fin
GAP TYPE-3
AL163540.11 RP11-348N17 HSCHR9_CTG29 SC fin
GAP TYPE-2
FO082826.2 RP11-318L1 HSCHR9_CTG29 SC pre joinwhite 0 0 0 one or more unfinished sequences; no overlap present
FO082860.6 CH17-137D14 HSCHR9_CTG29 SC top
GAP type-3
FP565169.3 RP11-137I8 HSCHR9_CTG30_1 SC fin joingreen 2,000 0 100
CR769776.8 RP11-793G16 HSCHR9_CTG30_1 SC fin joingreen 46,349 0 100
AL773524.13 RP11-250H24 HSCHR9_CTG30_1 SC fin joingreen 2,000 0 100
AL445665.21 RP11-574E24 HSCHR9_CTG30_1 SC fin joingreen 33,096 0 100
AL359955.25 RP11-460N11 HSCHR9_CTG30_1 SC fin joingreen 18,830 0 100
AC125634.1 RP11-512E23 HSCHR9_CTG30_1 BCM fin
GAP type-2
FQ976906.16 WI2-3174M15 HSCHR9_CTG30_1 SC pre
GAP type-3
FO082814.2 ABC13-48845200J1 HSCHR9_CTG30_2 SC fin joinwhite 886 1 99.661 alignment exists; one or more unfinished sequences; alignment length < 2000
AL512605.13 RP11-15J10 HSCHR9_CTG30_2 SC fin
GAP type-3
   FP326651.17 CH17-322D16 HSCHR9_CTG32 MINUS fin
GAP type-3
FP928979.4 ABC14-1080714F14 HSCHR9_CTG33 SC fin joinyellow 1,999 2 99.900 alignment length < 2000
BX284632.11 RP11-460E7 HSCHR9_CTG33 SC fin joinred 163,936 16 99.979 >0 gap of 50bp or more, not simple sequence
AC129778.5 RP11-1221G12 HSCHR9_CTG33 WUGSC fin joingreen 46,731 1 100 simple sequence in gap
AL136317.5 RP11-15E1 HSCHR9_CTG33 SC fin joingreen 71,768 0 100
AL669942.7 RP11-399F4 HSCHR9_CTG33 SC fin joingreen 1,999 1 100
AL513478.10 RP11-327I22 HSCHR9_CTG33 SC fin joinred 51,887 72 99.530 >0 gap of 50bp or more, not simple sequence
AL591479.3 RP11-154P18 HSCHR9_CTG33 SC fin joingreen 2,000 0 99.950
FP885858.2 ABC12-46759700H8 HSCHR9_CTG33 SC fin
   GAP TYPE-3 200000 OPTICAL MAP
FP885918.3 ABC11-49405500P20 HSCHR9_CTG34 SC fin joinwhite 1,215 0 100 alignment exists; one or more unfinished sequences; alignment length < 2000
CR788267.4 RP11-120E5 HSCHR9_CTG34 SC fin joingreen 102,247 1 100 simple sequence in gap
CR788261.6 RP11-93P10 HSCHR9_CTG34 SC fin joingreen 102,175 56 99.820
BX664608.6 RP11-1082I11 HSCHR9_CTG34 SC fin joingreen 12,333 6 99.846 simple sequence in gap
AL353770.18 RP11-395E19 HSCHR9_CTG34 SC fin joingreen 2,001 0 100
AL162233.14 RP11-292B8 HSCHR9_CTG34 SC fin joinred 1,173 3 98.977 half-dovetail of >50bp
BX005195.5 RP11-203I2 HSCHR9_CTG34 SC fin joingreen 70,018 0 100
AL954685.6 RP11-237M21 HSCHR9_CTG34 SC fin joingreen 71,914 0 100
BX664730.2 RP11-118H15 HSCHR9_CTG34 SC fin joinred 14,158 7 99.788 >0 gap of 50bp or more, not simple sequence
AL355151.11 RP11-288C24 HSCHR9_CTG34 SC fin joingreen 2,000 0 100
AL627230.15 RP11-12A20 HSCHR9_CTG34 SC fin joingreen 2,000 0 100
BX649567.3 RP11-195B21 HSCHR9_CTG34 SC fin
   GAP type-3 300000 OPTICAL MAP
AL353608.20 RP11-561O23 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
   FQ976557.1 PCR_RP11_AL353608_1 HSCHR9_CTG35 CONTAINED in AL353608.20 unk joinyellow 256 0 99.219 identity < 99.6%; alignment length < 2000
AL161457.13 RP11-88I18 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL353616.14 RP11-274B18 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354794.16 RP11-203L2 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL356219.12 RP11-430C15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162730.26 RP11-265B8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590238.9 RP13-432J6 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL358113.21 RP11-16N10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
+A AL355140.25 RP11-548B3 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.700
AL353693.19 RP11-470P21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162421.17 RP11-415N7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162412.11 RP11-109D9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458921.1 ? HSCHR9_CTG35 CONTAINED in AL162412.11 unk joinyellow 259 0 99.614 alignment length < 2000
AL603625.11 RP11-385E2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591215.12 RP11-20D12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL606666.6 RP11-44J18 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
+A AL392044.7 RP11-195E11 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158153.10 RP11-373A9 HSCHR9_CTG35 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL162390.9 RP11-386J22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL442645.8 RP11-348N20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL358786.21 RP11-286M8 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458923.1 ? HSCHR9_CTG35 CONTAINED in AL358786.21 unk joinyellow 57 0 98.246 identity < 99.6%; alignment length < 2000
AL159990.12 RP11-141J10 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL356318.7 RP11-161E22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592438.7 RP11-187G6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161913.11 RP11-64P11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160273.9 RP11-366I5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL391819.6 RP11-8L13 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL392106.4 RP11-563H8 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161732.7 RP11-52I12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL671309.6 RP11-409O11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL138751.18 RP11-346E17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL583829.7 RP11-61E5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590311.5 RP11-20F16 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL135924.11 RP11-63P12 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL445646.11 RP11-217F16 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL596448.5 RP11-313E4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL449323.19 RP11-429L21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591662.6 RP11-28P17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590662.5 RP11-528M21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162416.13 RP11-296H15 HSCHR9_CTG35 SC fin joingreen 1,998 1 100 simple sequence in gap
AL591031.3 RP11-151D14 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.900 simple sequence in gap
AL359997.8 RP11-71A24 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AL449083.23 RP11-434N3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355604.11 RP11-404E6 HSCHR9_CTG35 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL451127.6 RP11-128I7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL512594.7 RP11-549A6 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.800
AL627324.12 RP11-47F23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL513124.9 RP11-401G5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL512644.10 RP11-726B11 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL603652.7 RP11-238D24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL357872.23 RP11-308P9 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL355152.8 RP11-725M24 HSCHR9_CTG35 SC fin joinyellow 100 0 99.000 identity < 99.6%
AL355674.10 RP11-171A24 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458922.1 ? HSCHR9_CTG35 CONTAINED in AL355674.10 unk joinyellow 392 0 99.745 alignment length < 2000
AL137018.9 RP11-133M9 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158833.13 RP11-64C9 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354795.17 RP11-174B4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL390874.19 RP11-238K16 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158825.12 RP11-197P3 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL133548.6 RP11-235O14 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.950 simple sequence in gap
AL353756.5 RP11-415D9 HSCHR9_CTG35 SC fin joingreen 1,999 2 99.950 simple sequence in gap
AL158073.10 RP11-323A7 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL353780.15 RP11-470F18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160280.10 RP11-66O21 HSCHR9_CTG35 SC fin joingreen 1,992 1 99.749
AL157883.15 RP11-360J12 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL359253.17 RP11-428L19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353607.20 RP11-652B19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL589653.9 RP11-468J21 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
AL391868.16 RP11-422N19 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL590664.8 RP11-66C24 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL161626.20 RP11-214N16 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458919.1 ? HSCHR9_CTG35 CONTAINED in AL161626.20 unk joinyellow 400 0 99.750 alignment length < 2000
AL359314.14 RP11-108L4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL390239.16 RP11-58J3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458927.1 ? HSCHR9_CTG35 CONTAINED in AL390239.16 unk joinyellow 393 0 99.746 alignment length < 2000
AL353637.21 RP11-159H20 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AL161789.29 RP11-490H9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353710.7 RP11-470P4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359204.10 RP11-147H13 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158159.14 RP11-498N2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL353794.10 RP11-466A17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359849.12 RP11-111E2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355535.14 RP11-494N1 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL160268.14 RP11-141P7 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL160278.24 RP11-574G7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354700.12 RP11-545E20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353705.23 RP11-336N8 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353594.13 RP11-83O16 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL592448.4 RP13-342J6 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL445684.8 RP11-45D15 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
AL592221.6 RP11-216F5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592047.10 RP11-506C15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354675.20 RP11-217F15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359642.12 RP11-507F17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF511088.1 ? HSCHR9_CTG35 CONTAINED in AL359642.12 fin joinyellow 357 1 100 alignment length < 2000
AL512634.9 RP11-165H23 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.900
AL160166.10 RP11-159N19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL450243.13 RP11-567E16 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL358975.8 RP11-375O18 HSCHR9_CTG35 SC fin joingreen 2,001 0 99.950
AL445252.13 RP11-362L2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353813.12 RP11-79D8 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161912.15 RP11-403N16 HSCHR9_CTG35 SC fin joingreen 1,996 1 99.800 simple sequence in gap
AL161782.14 RP11-327L9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160168.11 RP11-394O9 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161780.8 RP11-187K16 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354937.12 RP11-50K12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL390788.15 RP11-384P5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160267.17 RP11-117O7 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353707.14 RP11-553J6 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL138749.13 RP11-289F5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354682.22 RP11-282L14 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL353666.11 RP11-363O16 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL445672.15 RP11-66D1 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162397.14 RP11-86C4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161727.15 RP11-232A1 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458925.1 ? HSCHR9_CTG35 CONTAINED in AL161727.15 unk joinyellow 384 0 99.740 alignment length < 2000
AL353682.11 RP11-203D19 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL365190.16 RP11-512H14 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.750 simple sequence in gap
AL591368.6 RP11-154D17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158154.28 RP11-383M4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355985.18 RP11-98O17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158047.9 RP11-388B24 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
   KF458926.1 ? HSCHR9_CTG35 CONTAINED in AL158047.9 unk joinyellow 284 0 99.648 alignment length < 2000
AL357032.13 RP11-432M2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL162726.16 RP11-15B24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL356490.14 RP11-333B6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353774.11 RP11-267O11 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.700
AL133391.5 RP11-22C13 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458924.1 ? HSCHR9_CTG35 CONTAINED in AL133391.5 unk joinyellow 382 0 99.738 alignment length < 2000
AL359202.16 RP11-541F16 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL499602.6 RP11-158H18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL671136.3 RP11-434D13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL137847.12 RP11-439K3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161786.12 RP11-344L17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353641.9 RP11-142P12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL450026.10 RP11-439A18 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354920.21 RP11-522I20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL662787.6 RP11-162J2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL354733.15 RP11-575L7 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL732446.4 RP11-346I8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL390838.26 RP11-158D2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL356134.14 RP11-380F14 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353787.21 RP11-667H17 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL157886.13 RP11-59M22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354692.23 RP11-361M4 HSCHR9_CTG35 SC fin joingreen 1,999 2 99.850 simple sequence in gap
AL390777.13 RP11-301F14 HSCHR9_CTG35 SC fin joingreen 2,000 2 99.750 simple sequence in gap
   KF458928.1 ? HSCHR9_CTG35 CONTAINED in AL390777.13 unk joinyellow 337 0 99.703 alignment length < 2000
AL596132.7 RP11-30A1 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL445532.8 RP11-263K15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354897.11 RP11-323N23 HSCHR9_CTG35 SC fin joingreen 2,007 0 100
AL159991.14 RP11-14C18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL583827.7 RP11-172F7 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL451132.9 RP11-7N10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL451131.5 RP11-30C23 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL157882.5 RP11-202I11 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353743.22 RP11-213G2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL161453.11 RP11-65C15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161447.20 RP11-379P1 HSCHR9_CTG35 SC fin joingreen 1,998 1 100 simple sequence in gap
AL450106.11 RP11-280P22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL137849.13 RP11-507D14 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353678.11 RP11-229M1 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158828.14 RP11-359J6 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353613.10 RP11-395D3 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL159996.7 RP11-401F12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158149.14 RP11-208G24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL513318.8 RP11-276H19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158205.12 RP11-177F4 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL136367.10 RP11-58O2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353752.6 RP11-497K15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161787.13 RP11-40C6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591852.10 RP11-249H20 HSCHR9_CTG35 SC fin joingreen 1,755 0 100
AL160279.21 RP11-65B23 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL772337.17 ICI-21GA2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL353572.13 RP11-350E12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353726.22 RP11-345K9 HSCHR9_CTG35 SC fin joinyellow 1,996 2 99.349 identity < 99.6%
+A AL451142.7 RP11-1E11 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158076.20 RP11-350G13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353748.13 RP11-317B17 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162729.8 RP11-215O15 HSCHR9_CTG35 SC fin joingreen 1,996 1 100 simple sequence in gap
AL592486.9 RP13-60M5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX537321.14 678B8 HSCHR9_CTG35 SC fin joinyellow 1,982 2 99.445 identity < 99.6%
AL390791.15 RP11-204A14 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL512591.6 RP11-176L21 HSCHR9_CTG35 SC fin joingreen 1,996 1 99.749
AL772202.14 RP11-791O21 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL353150.25 RP11-82L18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160054.14 RP11-8C21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX000356.6 RP11-89K14 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL929575.24 ICRF4X-68G7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590233.23 RP13-93L13 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL161910.19 RP11-260L6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL606807.34 RP11-316P17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
FO680661.2 RP11-432A9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
FP565589.4 ABC8-41088700H5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX470209.3 RP5-1050E16 HSCHR9_CTG35 SC fin joinpurple 1,676 1 100 approved certificate; >0 gap of 50bp or more, not simple sequence
FP671130.2 ABC10-44539500D13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   FO681505.2 ABC10-45509200N16 HSCHR9_CTG35 CONTAINED_TURNOUT in AEKP01166227.1 fin joingray 18,205 4 99.885 contained sequence
AEKP01166227.1 ? HSCHR9_CTG35 None wgs joinwhite 9,872 4 99.727 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
FO681513.2 ABC8-42546500O8 HSCHR9_CTG35 SC pre joinwhite 11,660 1 99.974 alignment exists; one or more unfinished sequences
FP671131.2 ABC10-44560800J4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL451122.7 RP11-8B23 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL161629.10 RP11-406A20 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353649.12 RP11-30P16 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL389888.8 RP11-389K14 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161632.21 RP11-85P23 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354853.12 RP11-555F9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458929.1 ? HSCHR9_CTG35 CONTAINED in AL354853.12 unk joinyellow 311 0 99.678 alignment length < 2000
AL353619.9 RP11-563G12 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL446024.12 RP11-61N16 HSCHR9_CTG35 SC fin joingreen 2,000 1 100
AL354862.12 RP11-83L6 HSCHR9_CTG35 SC fin joinyellow 100 0 100 alignment length < 2000
   KF458931.1 ? HSCHR9_CTG35 CONTAINED in AL354862.12 unk joinyellow 204 0 99.510 identity < 99.6%; alignment length < 2000
AL162585.15 RP11-148I22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355607.10 RP11-367F23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158071.23 RP11-305L7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL513353.7 RP11-309N12 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL353645.16 RP11-446A5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353764.9 RP11-440G5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL159999.15 RP11-8I8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591214.8 RP11-18I23 HSCHR9_CTG35 SC fin joingreen 1,995 2 99.850 simple sequence in gap
AL928802.7 RP13-338G2 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL583841.16 RP11-556L2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL391219.12 RP11-118F2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354751.7 RP11-100G15 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL136097.10 RP11-62C3 HSCHR9_CTG35 SC fin joingreen 1,985 1 99.899 simple sequence in gap
AL137848.5 RP11-77D6 HSCHR9_CTG35 SC fin joingreen 29,226 0 100
AL157827.17 RP11-19J3 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL137074.17 RP11-476B13 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL136981.22 RP11-526D8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL389924.17 RP11-544N10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL451065.13 RP11-274J16 HSCHR9_CTG35 SC fin joingreen 45,730 0 100
AL390760.25 RP11-370F5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354991.11 RP11-480F4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL583839.12 RP11-165J3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353629.22 RP11-30L4 HSCHR9_CTG35 SC fin joingreen 1,999 2 99.800 simple sequence in gap
AL359181.28 RP11-392N11 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
AL442224.17 RP11-53B5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL357073.19 RP11-231K24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL360020.15 RP11-490F3 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.950 simple sequence in gap
AL158152.18 RP11-2B6 HSCHR9_CTG35 SC fin joingreen 3,368 2 99.911 simple sequence in gap
AL691447.18 RP11-307E17 HSCHR9_CTG35 SC fin joingreen 11,958 11 99.816 simple sequence in gap
AL358232.19 RP11-533K9 HSCHR9_CTG35 SC fin joinyellow 1,995 4 99.148 half-dovetail of >0bp and <=50bp; identity < 99.6%
   KF458932.1 ? HSCHR9_CTG35 CONTAINED in AL358232.19 unk joinyellow 385 0 99.740 alignment length < 2000
AL161728.25 RP11-342C23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL157936.12 RP11-279I21 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL807757.9 RP11-49O14 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353768.28 RP11-54O15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354893.14 RP11-80I15 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL157384.8 RP11-173G21 HSCHR9_CTG35 SC fin joingreen 1,998 1 100 simple sequence in gap
AL446023.12 RP11-346O18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161729.27 RP11-435O5 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL929564.7 RP11-426M7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX322800.3 RP11-762K23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL392185.10 RP11-332M4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL355536.13 RP11-160D19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354861.11 RP11-180I4 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL161454.10 RP11-72B4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458935.1 ? HSCHR9_CTG35 CONTAINED in AL161454.10 unk joinyellow 387 0 99.742 alignment length < 2000
AL159167.23 RP11-346B7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL449403.11 RP11-569G13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL138754.13 RP11-115O23 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.900 simple sequence in gap
AL160269.14 RP11-240L7 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL133477.16 RP11-172F4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353578.18 RP11-392G7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL589843.9 RP11-535M15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158827.27 RP11-330M2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445670.19 RP11-520B13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590705.9 RP11-498P14 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
AL512590.2 RP11-23J9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458933.1 ? HSCHR9_CTG35 CONTAINED in AL512590.2 unk joinyellow 211 0 99.526 identity < 99.6%; alignment length < 2000
   KF459923.1 ? HSCHR9_CTG35 CONTAINED in AL512590.2 unk joinyellow 389 0 99.743 alignment length < 2000
AL449464.12 RP11-508D10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162385.16 RP11-244N9 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL445531.10 RP11-546O6 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL499604.9 RP11-23B15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354726.17 RP11-535C21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL137073.13 RP11-404F11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL360081.6 RP11-270F18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591502.10 RP11-199C17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL356282.13 RP11-303E19 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.750 simple sequence in gap
AL445495.5 RP11-349P17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353782.23 RP11-207C11 HSCHR9_CTG35 SC fin joingreen 1,996 2 100 simple sequence in gap
AL807776.1 RP11-105G5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL136084.11 RP11-92C4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354923.12 RP11-192E23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162427.24 RP11-96L7 HSCHR9_CTG35 SC fin joingreen 1,977 2 100 simple sequence in gap
AL137067.7 RP11-13B9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL589846.5 RP11-199O16 HSCHR9_CTG35 SC fin joingreen 1,998 1 99.950 simple sequence in gap
AL162394.14 RP11-547C13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL138835.9 RP11-554F20 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359710.15 RP11-30L7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL358937.16 RP11-60I3 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AL360084.11 RP11-124M17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL137072.8 RP11-29B11 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
AL356798.18 RP11-467B11 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL445214.7 RP11-208F1 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353805.20 RP11-190I13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354917.8 RP11-61P7 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL390876.19 RP11-394D2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL357293.16 RP11-418K10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162395.15 RP11-62L10 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
+A AL357935.14 RP11-80H12 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.750 simple sequence in gap
+A AL161631.20 RP11-70K10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
+A AL359893.16 RP11-35N6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353621.19 RP11-490D19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591377.4 RP11-102M4 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL356516.12 RP11-75J9 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL133413.5 RP11-54K22 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.950
AL360018.13 RP11-386L12 HSCHR9_CTG35 SC fin joingreen 2,002 0 99.600
AL596454.8 RP11-177I8 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
AL355588.8 RP11-515J13 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL391867.5 RP11-402M4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL137021.15 RP11-202A15 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL442644.7 RP11-342F21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354701.7 RP11-785H23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL450312.10 RP11-138L24 HSCHR9_CTG35 SC fin joingreen 1,994 2 99.649 simple sequence in gap
AL365396.10 RP11-338N12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL449304.19 RP11-366H6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359679.8 RP11-298D22 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL589823.10 RP11-341A22 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL589844.4 RP11-436F21 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL390962.11 RP11-84G24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL356576.16 RP11-318L4 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL662794.5 RP11-726G19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590386.5 RP11-721G21 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL512639.8 RP11-346G21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF511084.1 ? HSCHR9_CTG35 CONTAINED in AL512639.8 fin joinyellow 394 1 100 alignment length < 2000
   KF458940.1 ? HSCHR9_CTG35 CONTAINED in AL512639.8 unk joinyellow 393 0 99.746 alignment length < 2000
AL590381.4 RP11-373O10 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL161791.15 RP11-82L2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354938.12 RP11-86L19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL596402.5 RP11-384D5 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AL512646.11 RP11-217O12 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL450426.7 RP11-317C20 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359846.11 RP11-413C10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353685.23 RP11-31J20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359182.20 RP11-217B7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL669893.4 RP11-122F10 HSCHR9_CTG35 SC fin joinyellow 2,000 1 98.700 identity < 99.6%
AL591506.24 RP11-112N13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590368.11 RP11-3K19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL450265.11 RP11-477A7 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161627.13 RP11-287A8 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158070.11 RP11-235C23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL627247.7 RP11-169B16 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592437.7 RP11-18B3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592488.7 RP11-219P18 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL392084.6 RP11-576E23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL732323.5 RP11-6F6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL611922.7 RP11-633N4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL512601.18 RP11-500B3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL669899.4 RP11-207F6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL451140.15 RP11-540H22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458930.1 ? HSCHR9_CTG35 CONTAINED in AL451140.15 unk joinyellow 379 0 99.736 alignment length < 2000
AL512649.6 RP11-308N19 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL590362.12 RP11-214G2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL512593.9 RP11-508N12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458934.1 ? HSCHR9_CTG35 CONTAINED in AL512593.9 unk joinyellow 387 0 99.742 alignment length < 2000
AL807761.8 RP11-196I18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445487.8 RP11-417L14 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL137852.15 RP11-131A5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359552.16 RP11-363D24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL360218.22 RP11-150J11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL389915.19 RP11-438P9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162389.21 RP11-380I20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353137.7 RP11-272G11 HSCHR9_CTG35 SC fin joingreen 20,587 4 99.874 simple sequence in gap
AC068050.6 RP11-240E2 HSCHR9_CTG35 WUGSC fin joingreen 2,000 0 100
   KF511082.1 ? HSCHR9_CTG35 CONTAINED in AC068050.6 fin joinyellow 389 1 100 alignment length < 2000
AL353742.23 RP11-505C13 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL137019.6 RP11-143P10 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL353766.8 RP11-400A24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL669983.2 RP11-220D10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL358779.13 RP11-339N8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359692.9 RP11-3J11 HSCHR9_CTG35 SC fin joingreen 1,994 1 99.850
AL354797.16 RP11-115J22 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.900
AL669894.3 RP11-312G2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL358815.12 RP11-526J3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359963.29 RP11-18A3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL450025.10 RP11-388N6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162733.9 RP11-397F23 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
AL135789.18 RP11-412H14 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.850 simple sequence in gap
AL158829.14 RP11-406O23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL627225.11 RP11-100N5 HSCHR9_CTG35 SC fin joinyellow 1,998 1 99.600 identity < 99.6%
AL353806.9 RP11-174A8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158823.11 RP11-151F5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353598.12 RP11-470J20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158158.14 RP11-427L11 HSCHR9_CTG35 SC fin joingreen 1,997 3 99.950 simple sequence in gap
AL354982.12 RP11-473H13 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
   KF458937.1 ? HSCHR9_CTG35 CONTAINED in AL354982.12 unk joinyellow 270 0 99.630 alignment length < 2000
AL592463.10 RP11-410K21 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.600
AL513328.12 RP13-461N9 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL157881.14 RP11-104M22 HSCHR9_CTG35 SC fin joingreen 79,314 21 99.834 simple sequence in gap
AL442064.10 RP11-272D1 HSCHR9_CTG35 SC fin joingreen 68,452 0 100
AC007157.6 RP11-78A1 HSCHR9_CTG35 WIBR fin joingreen 4,550 5 99.890 simple sequence in gap
AL365231.11 RP11-278D5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162414.11 RP11-202G18 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354661.14 RP11-386D8 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL159168.15 RP11-401H23 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL135787.13 RP11-16L21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL356491.12 RP11-310C13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354877.25 RP11-430K21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL442066.11 RP11-570D4 HSCHR9_CTG35 SC fin joingreen 1,987 4 99.849 simple sequence in gap
AL138756.23 RP11-4O1 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158824.11 RP11-165N19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359073.25 RP11-432F4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162732.43 RP11-32M23 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458939.1 ? HSCHR9_CTG35 CONTAINED in AL162732.43 unk joinyellow 111 0 99.099 identity < 99.6%; alignment length < 2000
AL445187.7 RP11-576C12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL390067.19 RP11-276E15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL360235.12 RP11-88M9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL139041.17 RP11-408O19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162588.22 RP11-349F12 HSCHR9_CTG35 SC fin joinyellow 98 0 100 half-dovetail of >0bp and <=50bp
AL449105.22 RP11-9H12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL449305.4 RP11-110L1 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL137066.15 RP11-10I9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359455.22 RP11-444K11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162727.20 RP11-168K11 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL157702.10 RP11-18B16 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162393.15 RP11-534I8 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL137850.12 RP11-56P10 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL445543.20 RP11-4H20 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL356796.16 RP11-82I1 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL138895.16 RP11-9M16 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF459656.1 ? HSCHR9_CTG35 CONTAINED in AL138895.16 unk joinyellow 367 0 99.728 alignment length < 2000
   KF459658.1 ? HSCHR9_CTG35 CONTAINED in AL138895.16 unk joinyellow 391 0 99.744 alignment length < 2000
AL160275.14 RP11-402G3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL390240.18 RP11-428F18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL133412.7 RP11-78H18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162425.15 RP11-523L1 HSCHR9_CTG35 SC fin joingreen 1,999 0 100
   KF511083.1 ? HSCHR9_CTG35 CONTAINED in AL162425.15 fin joinyellow 358 1 100 alignment length < 2000
AL355601.19 RP11-445L6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL731824.5 RP11-382H18 HSCHR9_CTG35 SC fin joinyellow 1,974 2 99.341 identity < 99.6%
AL714001.13 RP11-763I5 HSCHR9_CTG35 SC fin joingreen 1,988 1 99.698 simple sequence in gap
AL691420.13 RP11-352C6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL731897.12 RP11-284G10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL731813.23 RP11-354N9 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL732367.3 RP11-81L14 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL691426.9 RP11-787B4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353141.13 RP11-58C3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL137024.27 RP11-45A16 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL669963.4 RP11-44C14 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL133282.15 RP11-264C15 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458941.1 ? HSCHR9_CTG35 CONTAINED in AL133282.15 unk joinyellow 368 0 99.728 alignment length < 2000
AL133284.13 RP11-67K19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL157829.24 RP11-305F14 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL392085.12 RP11-225L6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354981.41 RP11-696J10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355608.11 RP11-567J2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL358792.24 RP11-280M4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF511081.1 ? HSCHR9_CTG35 CONTAINED in AL358792.24 fin joinyellow 394 1 100 alignment length < 2000
AL445644.6 RP11-388N2 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161630.12 RP11-500B12 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL160272.16 RP11-336A17 HSCHR9_CTG35 SC fin joingreen 1,998 1 99.950 simple sequence in gap
AL354754.9 RP11-281A20 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL445663.10 RP11-442A13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158831.15 RP11-564A4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL365195.17 RP11-451E16 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445440.9 RP11-185G1 HSCHR9_CTG35 SC fin joingreen 1,995 1 99.799
AL355592.11 RP11-349E4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL589703.6 RP11-127L21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL157780.12 RP11-98E22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL512602.8 RP11-111M7 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
   KF458936.1 ? HSCHR9_CTG35 CONTAINED in AL512602.8 unk joinyellow 386 0 99.741 alignment length < 2000
AL445310.9 RP11-61P11 HSCHR9_CTG35 SC fin joingreen 101 0 100
AL353773.9 RP11-574M5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL138894.11 RP11-28O4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL353630.12 RP11-37K5 HSCHR9_CTG35 SC fin joingreen 100 0 100
AC006288.1 RP11-295D22 HSCHR9_CTG35 WIBR fin joingreen 52,731 1 100 simple sequence in gap
AL445683.11 RP11-57K1 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.600
AL354931.13 RP11-535B18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL441989.13 RP11-360A18 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL355589.8 RP11-168F17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592549.7 RP11-374B16 HSCHR9_CTG35 SC fin joingreen 1,999 2 100 simple sequence in gap
AL353736.11 RP11-412P1 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL391870.16 RP11-491C24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590642.9 RP11-164D15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL138836.15 RP11-88M19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161911.17 RP11-27I1 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354792.27 RP11-556L12 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AC006430.22 RP11-525G7 HSCHR9_CTG35 WIBR fin joingreen 100 0 100
AL137068.10 RP11-165P4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL513122.7 RP11-477J21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161784.13 RP11-342H3 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL359644.10 RP11-162D16 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF510322.1 ? HSCHR9_CTG35 CONTAINED in AL359644.10 unk joinyellow 384 1 100 alignment length < 2000
AL357936.25 RP11-524G24 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL365274.17 RP11-298A17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL450285.13 RP11-358F24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL596244.9 RP11-244O19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445587.10 RP11-429D3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL442634.13 RP11-297L11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162423.18 RP11-456D21 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162424.20 RP11-498E2 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359636.17 RP11-542K23 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL162254.17 RP11-64P14 HSCHR9_CTG35 SC fin joingreen 78,450 7 99.983 simple sequence in gap
AC006313.1 RP11-465F21 HSCHR9_CTG35 WIBR fin joingreen 2,000 0 99.950
   KF458938.1 ? HSCHR9_CTG35 CONTAINED in AC006313.1 unk joinyellow 376 0 99.734 alignment length < 2000
AL359512.15 RP11-163B6 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
AC007066.4 RP11-355O1 HSCHR9_CTG35 WIBR fin joingreen 2,000 1 99.800 simple sequence in gap
AL358946.15 RP11-137O6 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL365338.17 RP11-123N4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL365504.33 RP11-524I9 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL445489.10 RP11-230L22 HSCHR9_CTG35 SC fin joingreen 1,988 1 99.950
AL161790.23 RP11-558L8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL390774.10 RP11-417B4 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL158208.14 RP11-55P21 HSCHR9_CTG35 SC fin joingreen 100 0 100
AC006450.13 RP11-85O21 HSCHR9_CTG35 WIBR fin joingreen 51,270 0 100
AL158052.10 RP11-570J20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445284.11 RP11-277P3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162724.16 RP11-121A14 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL137846.24 RP11-101K10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL354979.17 RP11-10J18 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL669818.11 RP11-164H5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL158075.11 RP11-348K2 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354928.9 RP11-175D17 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL451125.7 RP11-474P12 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL445930.11 RP11-366O20 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL354710.17 RP11-65N13 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL627223.23 RP11-184B22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359632.9 RP11-269P11 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL162584.9 RP11-12A16 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
AL358074.22 RP11-423C15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458944.1 ? HSCHR9_CTG35 CONTAINED in AL358074.22 unk joinyellow 391 0 99.744 alignment length < 2000
AL627303.17 RP11-770B5 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL445186.4 RP11-336P12 HSCHR9_CTG35 SC fin joingreen 1,992 1 100 simple sequence in gap
AL589923.11 RP11-374O2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445664.14 RP11-343J18 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.850 simple sequence in gap
AL162391.15 RP11-438L3 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AC006443.1 RP11-494N15 HSCHR9_CTG35 WIBR fin joingreen 2,000 0 100
AL356309.23 RP11-205K6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161908.13 RP11-123K19 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL161731.20 RP11-489N22 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
AL354944.22 RP11-106H5 HSCHR9_CTG35 SC fin joingreen 1,996 1 99.900
AL160169.12 RP11-405C6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL356862.10 RP11-1M19 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL357623.14 RP11-342E24 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.950 simple sequence in gap
AL450263.15 RP13-225O21 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL445222.9 RP11-356B19 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.800 simple sequence in gap
AL390116.26 RP11-373J8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL162426.20 RP11-56D16 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL162586.26 RP11-228B15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL157935.28 RP11-203J24 HSCHR9_CTG35 SC fin joingreen 303 0 100
AL360268.14 RP11-379C10 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL590708.18 RP11-395P17 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AL590722.15 RP11-57J6 HSCHR9_CTG35 SC fin joingreen 2,000 1 100
AL359091.10 RP11-339B21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL445287.16 RP11-187B3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL356481.16 RP11-216B9 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL359678.15 RP11-550J21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL441992.17 RP11-545E17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL672142.9 RP11-101E3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592211.27 RP11-167N5 HSCHR9_CTG35 SC fin joingreen 2,000 2 99.850 simple sequence in gap
AL158151.16 RP11-247A12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161785.16 RP11-344B5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353803.23 RP11-65J3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL391056.25 RP11-492E3 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
AL590369.18 RP11-483H20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL592219.16 RP11-5J2 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL158207.15 RP11-409K20 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL136141.13 RP11-138E2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL392105.13 RP11-202H3 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL360004.22 RP11-88G17 HSCHR9_CTG35 SC fin joinyellow 1,999 1 99.850 alignment length < 2000
FP565345.4 ABC7-40618900G22 HSCHR9_CTG35 SC fin joinyellow 26,480 19 99.811 half-dovetail of >0bp and <=50bp
   ABBA01043973.1 ? HSCHR9_CTG35 CONTAINED_TURNOUT in AUXG01000072.1 wgs joingray 29,328 26 99.884 contained sequence
AUXG01000072.1 ? HSCHR9_CTG35 None wgs
   ABBA01012042.1 ? HSCHR9_CTG35 CONTAINED_TURNOUT in AUXG01000072.1 wgs joingray 3,252 0 99.969 contained sequence
AL354898.10 RP11-618A20 HSCHR9_CTG35 SC fin joingreen 100 0 100
   KF458942.1 ? HSCHR9_CTG35 CONTAINED in AL354898.10 unk joinyellow 339 0 99.705 alignment length < 2000
AL353695.7 RP11-17L7 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL359092.14 RP11-57C19 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161733.20 RP11-83J21 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL583807.20 RP11-105C7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355872.15 RP11-143H20 HSCHR9_CTG35 SC fin joingreen 1,997 3 99.800 simple sequence in gap
AL157938.22 RP11-544A12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
   KF458943.1 ? HSCHR9_CTG35 CONTAINED in AL157938.22 unk joinyellow 152 0 99.342 identity < 99.6%; alignment length < 2000
AL354855.26 RP11-643E14 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL358781.19 RP11-334J6 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160276.21 RP11-40A7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL160271.19 RP11-323H21 HSCHR9_CTG35 SC fin joingreen 1,988 1 99.950 simple sequence in gap
AL603649.9 RP11-326N3 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL713892.10 RP13-195B13 HSCHR9_CTG35 SC fin joingreen 329 0 100
AL691506.13 RP13-220H23 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL513102.8 RP11-32B11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353631.17 RP11-5N16 HSCHR9_CTG35 SC fin joingreen 2,000 1 100 simple sequence in gap
AL159997.14 RP11-479K20 HSCHR9_CTG35 SC fin joinyellow 100 0 98.000 identity < 99.6%; alignment length < 2000
AL353701.15 RP11-203M2 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354735.14 RP11-738I14 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL160165.17 RP11-143F18 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL445645.10 RP11-295G24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL593851.6 RP11-415H23 HSCHR9_CTG35 SC fin joingreen 1,998 3 99.750 simple sequence in gap
AL162417.23 RP11-326L24 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
AL732364.10 RP11-430N14 HSCHR9_CTG35 SC fin joingreen 58,774 33 99.862
AL772161.10 CTD-2612A24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL593848.15 RP13-100B2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX324209.11 RP13-388O5 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX649571.6 LL09NC01-124H8 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
BX629352.5 WI2-686J12 HSCHR9_CTG35 SC fin joinpurple 1,996 7 99.299 approved certificate; half-dovetail of >50bp
AC002101.1 ? HSCHR9_CTG35 WIBR fin joingreen 7,092 3 99.901 simple sequence in gap
AL365494.17 RP11-317B10 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.800
AL590710.14 RP11-153P4 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL357934.29 RP11-565P9 HSCHR9_CTG35 SC fin joingreen 2,000 1 99.950
AL445931.29 RP11-374P20 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591386.19 RP11-349K21 HSCHR9_CTG35 SC fin joingreen 1,998 1 99.850 simple sequence in gap
BX649632.2 LL09NC01-251B2 HSCHR9_CTG35 SC fin joingreen 1,999 1 100 simple sequence in gap
   KF458945.1 ? HSCHR9_CTG35 CONTAINED in BX649632.2 unk joinyellow 372 0 99.731 alignment length < 2000
BX649601.2 LL09NC01-139C3 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
   FP885866.2 ABC14-50138400P6 HSCHR9_CTG35 CONTAINED_TURNOUT in AEKP01009072.1 fin joingreen 5,478 4 99.617
AEKP01009072.1 ? HSCHR9_CTG35 None wgs
   GAP TYPE-2 2444 PAIRED ENDS
AEKP01009073.1 ? HSCHR9_CTG35 None wgs
   ABBA01017187.1 ? HSCHR9_CTG35 CONTAINED_TURNOUT in AEKP01009073.1 wgs joinyellow 1,156 1 99.913 alignment length < 2000
   FP565578.2 ABC10-44484300O12 HSCHR9_CTG35 CONTAINED_TURNOUT in ABBA01017187.1 fin joingray 14,933 7 99.859 contained sequence
AL354796.21 RP11-145E17 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL683798.22 RP11-205O8 HSCHR9_CTG35 SC fin joingreen 6,652 0 99.759
AC156789.1 WI2-2903G16 HSCHR9_CTG35 UWGC fin joingreen 7,653 1 99.961 simple sequence in gap
AL669970.10 RP11-473E2 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591890.31 RP11-54A22 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.600
AL645768.7 RP13-129E14 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL603650.10 RP11-263F14 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.850
AL353611.19 RP11-447M12 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL159992.13 RP11-166H7 HSCHR9_CTG35 SC fin joinyellow 100 0 99.000 identity < 99.6%
   KF458946.1 ? HSCHR9_CTG35 CONTAINED in AL159992.13 unk joinyellow 336 0 99.702 alignment length < 2000
AL390778.32 RP11-399H11 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353615.37 RP11-555H7 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL161452.19 RP11-426A6 HSCHR9_CTG35 SC fin joingreen 100 0 100
AL354761.17 RP11-98L5 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.900
AL158822.19 RP11-100C15 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL353636.16 RP11-469E24 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL355574.27 RP11-432J22 HSCHR9_CTG35 SC fin joingreen 2,000 0 100
AL591038.9 RP11-120E1 HSCHR9_CTG35 SC fin joingreen 1,999 1 99.800
AL138781.13 RP11-83N9 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.950
CR392000.2 WI2-1959D15 HSCHR9_CTG35 SC fin joingreen 6,579 0 100
   FP326719.4 WI2-2610K16 HSCHR9_CTG35 CONTAINED_TURNOUT in AUXG01000076.1 fin joingray 38,813 26 99.809 contained sequence
AUXG01000076.1 ? HSCHR9_CTG35 None wgs joingreen 38,427 26 99.867
AC174065.2 WI2-2942J8 HSCHR9_CTG35 UWGC fin joingreen 28,510 5 99.919
BX649589.3 RP5-1175C6 HSCHR9_CTG35 SC fin joingreen 2,000 0 99.750
AL592301.14 RP11-413M3 HSCHR9_CTG35 SC fin