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Alignment last updated: 03/15/2013 07:25:53

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.6%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.6%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignments for Z98258.1 and AL031258.12

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Z98258.1 Human DNA sequence from clone LA16c-444G9 on chromosome 16, complete sequence [htgs_phase3]

Length: 28,835 bp

AL031258.12 Human DNA sequence from clone LA16c-335H7 on chromosome 16, complete sequence [htgs_phase3]

Length: 37,307 bp

Alignment Summary

Join evaluation: yellow (alignment length < 2000)

Alignment count: 3

Go to Endhit Table

  • Alignment 1
  • Align ID: 46649
  • Total Length: 104
  • Aligned Length: 104
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • First Tail: 1000000bp
  • Second Tail: 1000000bp
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: false (L)
  • Valid Switchpoint: false (A)
  • Valid Switchpoint: false (A)
  • Valid Switchpoint: false (A)
Overlap Image
  • Alignment 2
  • Align ID: 46650
  • Total Length: 104
  • Aligned Length: 104
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • Preferred: Yes
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (L)
  • Valid Switchpoint: true (A)
  • Valid Switchpoint: true (A)
  • Valid Switchpoint: true (A)
Overlap Image
  • Alignment 3
  • Align ID: 46651
  • Total Length: 104
  • Aligned Length: 104
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (L)
  • Valid Switchpoint: true (A)
  • Valid Switchpoint: true (A)
  • Valid Switchpoint: true (A)
Overlap Image

Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
L28835105++chenhcTaxid 9606 chrom 16 Primary assembly2008-08-08 12:39:06.8562032346651GRCh38, GRCh37, Hs36
A28835105++chenhcTaxid 9606 chrom 16 Primary assembly2008-11-11 11:57:38.9304663046651
A28835105++chenhcTaxid 9606 chrom 16 Primary assembly2010-08-12 04:19:42.9868835546649
A28835105++chenhcTaxid 9606 chrom 16 Primary assembly2010-08-11 14:11:51.1208833346650

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Alignment 1 of 3

 Z98258.1 : + : 28732..28835
 AL031258.12 : + : 1..104
 Mismatches = 0, Gaps = 0, Length = 104
 Percent identity = 100%
 Score = 206.7 bits (104), Expect = 6.624e-54
  0 BAC and 0 Fosmid bridging clones.
  0 BAC and 0 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

Z98258.1    >-1       ------------------------------------------------------------ -1      
AL031258.12 >-1       ............................................................ -1      

Z98258.1    >-1       -------------------------------------------- -1      
AL031258.12 >-1       ............................................ -1

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Alignment 2 of 3

 Z98258.1 : + : 28732..28835
 AL031258.12 : + : 1..104
 Mismatches = 0, Gaps = 0, Length = 104
 Percent identity = 100%
 Score = 206.7 bits (104), Expect = 6.624e-54
  0 BAC and 35 Fosmid bridging clones.
  0 BAC and 35 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

Z98258.1    >28732  gatcatggaggagggtttccacatgctgttctcgtgatggtgagttctcacgggggctgc 28791 
AL031258.12 >1      ............................................................ 60    

Z98258.1    >28792  tggtttataagtggcagctccccctccactctctcgcctcctgc 28835 
AL031258.12 >61     ............................................ 104

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Alignment 3 of 3

 Z98258.1 : + : 28732..28835
 AL031258.12 : + : 1..104
 Mismatches = 0, Gaps = 0, Length = 104
 Percent identity = 100%
 Score = 206.7 bits (104), Expect = 6.624e-54
  0 BAC and 35 Fosmid bridging clones.
  0 BAC and 35 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

Z98258.1    >28732  gatcatggaggagggtttccacatgctgttctcgtgatggtgagttctcacgggggctgc 28791 
AL031258.12 >1      ............................................................ 60    

Z98258.1    >28792  tggtttataagtggcagctccccctccactctctcgcctcctgc 28835 
AL031258.12 >61     ............................................ 104

Events
IdTypeDateWhodidComment
71638InitHasAlign08/30/2006 13:07:01jcherry
find_overlaps run without blast filtering (-F F)
71639CuratedAlign08/30/2006 13:11:31jcherry
find_overlaps run without blast filtering (-F F)
71640ReRunFndOvlp10/02/2006 01:02:47jcherry
blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F F
bandwidths: 501 701 1001 5001
Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730

Running blast for AL031258.12 and Z98258.1
Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F F
131080CreateSwitchPt08/08/2008 12:39:06chenhc
From Hs build 36.1 agp files
71641ReSetShortOvlp09/04/2008 10:31:48dbo


157387CreateSwitchPt11/11/2008 11:57:38chenhc
contig_builder 1.3  Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib


223454CreateSwitchPt08/11/2010 14:11:51chenhc
tpf_m_Builder 1.45 Toolkit wrapper version: built Jul 29 2010 using /netopt/ncbi_tools64/c++.by-date/20100729/GCC401-Release64/lib


223503CreateSwitchPt08/12/2010 04:19:43chenhc
tpf_m_Builder 1.45 Toolkit wrapper version: built Jul 29 2010 using /netopt/ncbi_tools64/c++.by-date/20100729/GCC401-Release64/lib


244263SetPreferId03/15/2013 07:25:53gjt
preferred alignment has been checked(align_id:46650)




                        

                        

                        	
                        	

down arrow  BAC Ends



CloneRF


Accession%idPosition (strand) Accession%idPosition (strand)


CH17-214F17 Z98258.198.42%pos 9022 (F+) 
CTD-3128L21AL031258.12100%pos 12814 (R+) AL031258.1299.02%pos 17126 (F-) 
CTD-3208A5Z98258.197.47%pos 23080 (R+)  



down arrow  Fosmid Ends



CloneRF


Accession%idPosition (strand) Accession%idPosition (strand)


ABC10-1622970E6AL031258.1298.67%pos 37234 (R-)  
ABC10-43627200B7 AL031258.1298.72%pos 13102 (F+) 
ABC10-44089400K16 Z98258.198.62%pos 23778 (F-) 
ABC10-44118100H23Z98258.1100%pos 8761 (R+) AL031258.1299.6%pos 21991 (F-) 
ABC10-44137200F8Z98258.1100%pos 23705 (R+)  
ABC10-44420100G13 AL031258.12100%pos 9188 (F-) 
ABC10-44420700N8 AL031258.1299.66%pos 9214 (F-) 
ABC10-44420700P9AL031258.1299.77%pos 37214 (R-) AL031258.12100%pos 4032 (F+) 
ABC10-44446900D6AL031258.1299.73%pos 3487 (R+)  
ABC10-44448000P9 Z98258.199.04%pos 9435 (F-) 
ABC10-44454700G18Z98258.1100%pos 18265 (R+) AL031258.1299.58%pos 30930 (F-) 
ABC10-44537600K23Z98258.1100%pos 10956 (R-)  
ABC10-44540000K22 Z98258.199.85%pos 7473 (F-) 
ABC10-44563800G17 Z98258.1100%pos 5665 (F-) 
ABC10-44585500K24 AL031258.1299.76%pos 9204 (F-) 
ABC10-44585900O7 Z98258.1100%pos 7456 (F-) 
ABC10-44685500D3 AL031258.1299.56%pos 9166 (F-) 
ABC10-44787700G21AL031258.1299.32%pos 37224 (R-) AL031258.1299.57%pos 4027 (F+) 
ABC10-45500000H21AL031258.12100%pos 3836 (R+)  
ABC10-45505800E23 Z98258.1100%pos 20301 (F-) 
ABC10-45508400H6 AL031258.1298.93%pos 875 (F+) 
ABC10-45512500D1 AL031258.1299.71%pos 27671 (F+) 
ABC10-45515200D10Z98258.1100%pos 8509 (R-)  
ABC10-45516800I8AL031258.1299.88%pos 3827 (R+)  
ABC10-45532400F10Z98258.199.61%pos 16055 (R+) AL031258.1299.85%pos 29275 (F-) 
ABC10-45534300A7 Z98258.197.52%pos 26169 (F-) 
ABC10-46300800H23AL031258.1299.15%pos 14002 (R-)  
ABC10-46303400O22 AL031258.1299.42%pos 4918 (F-) 
ABC10-48952900P17 Z98258.199.57%pos 13444 (F-) 
ABC11-47168500P23Z98258.197.77%pos 5031 (R+)  
ABC11-47378500N5 Z98258.1100%pos 7908 (F-) 
ABC11-47399900I13AL031258.1299.82%pos 18529 (R-)  
ABC11-48005200H21Z98258.199.15%pos 12621 (R+) AL031258.1298.82%pos 21822 (F-) 
ABC11-48026300M20AL031258.12100%pos 28377 (R+)  
ABC11-48251100O4 AL031258.12100%pos 33505 (F-) 
ABC11-48259200G10 Z98258.1100%pos 7912 (F-) 
ABC11-48273200H23AL031258.1299.55%pos 661 (R+)  
ABC11-48290000E2AL031258.1299.43%pos 35608 (R-) Z98258.198.89%pos 25355 (F+) 
ABC11-48292800G13Z98258.199.49%pos 4215 (R-)  
ABC11-48294000M17 Z98258.199.84%pos 2664 (F+) 
ABC11-49341000L10AL031258.1299.01%pos 15810 (R+)  
ABC11-49345900A12 AL031258.12100%pos 33510 (F-) 
ABC11-49375400H3AL031258.1299.86%pos 35595 (R-)  
ABC11-49386700D8 AL031258.1298.6%pos 592 (F-) 
ABC11-49405800F22 AL031258.12100%pos 15743 (F+) 
ABC11-49431900K21AL031258.1299.49%pos 1211 (R+)  
ABC11-49466700P23 AL031258.12100%pos 14988 (F+) 
ABC11-49494900M17 AL031258.1299.34%pos 15744 (F+) 
ABC11-49495800I4AL031258.1299.23%pos 1207 (R+)  
ABC11-49539500O8 AL031258.1299.48%pos 14037 (F-) 
ABC11-49644400D12 Z98258.199.84%pos 22196 (F-) 
ABC12-46338700P19Z98258.198.93%pos 3392 (R-)  
ABC12-46343600B10 AL031258.12100%pos 16985 (F+) 
ABC12-46412400M15AL031258.1298.91%pos 19313 (R+)  
ABC12-46657300H24AL031258.1298.64%pos 15565 (R+)  
ABC12-46670700E17 Z98258.199.32%pos 9434 (F-) 
ABC12-46671000A18AL031258.1299.58%pos 35176 (R-) Z98258.1100%pos 24017 (F+) 
ABC12-46727400K12AL031258.1297.79%pos 18894 (R-)  
ABC12-46727900N21AL031258.1299.64%pos 34345 (R+)  
ABC12-46852600E11 Z98258.199.67%pos 4444 (F-) 
ABC12-46901600N6AL031258.12100%pos 19289 (R+)  
ABC12-46906700A17Z98258.1100%pos 12902 (R-)  
ABC12-46970100H19AL031258.1298.88%pos 35628 (R-) Z98258.199.72%pos 25875 (F+) 
ABC12-46991800I2AL031258.1298.65%pos 19288 (R+)  
ABC12-46993100C6 AL031258.1299.4%pos 4262 (F-) 
ABC12-47838400O11AL031258.1299.06%pos 236 (R+)  
ABC12-47956000E8Z98258.199.68%pos 21856 (R-)  
ABC12-47983900G21 Z98258.199.58%pos 11294 (F-) 
ABC12-47986200I9 AL031258.12100%pos 90 (F+) 
ABC12-47986300K16 Z98258.198.66%pos 11301 (F-) 
ABC12-49021200M10 AL031258.1299.61%pos 16983 (F+) 
ABC12-49021800E10Z98258.199.11%pos 14512 (R-)  
ABC12-49025500J6 AL031258.1298.75%pos 5750 (F+) 
ABC12-49038200L8 Z98258.1100%pos 14280 (F+) 
ABC12-49043000F11AL031258.12100%pos 15558 (R+)  
ABC12-49071300L10 AL031258.1299.25%pos 19711 (F-) 
ABC12-49071900D13 AL031258.1299.38%pos 19439 (F+) 
ABC12-49077700J24AL031258.12100%pos 15555 (R+)  
ABC12-49081300M8AL031258.12100%pos 15558 (R+)  
ABC12-49095800A5AL031258.1298.49%pos 26852 (R+)  
ABC12-49169300K4Z98258.199.67%pos 5699 (R-)  
ABC12-49206900E23AL031258.1298.6%pos 1836 (R-)  
ABC12-49212100M12AL031258.1299.56%pos 18929 (R-)  
ABC12-49212700A5 AL031258.12100%pos 26055 (F-) 
ABC12-49222000H13 AL031258.1297.73%pos 3225 (F+) 
ABC12-49225400N15 AL031258.1299.12%pos 3215 (F+) 
ABC12-49227400E13 AL031258.1299.37%pos 31407 (F+) 
ABC12-49237800N20AL031258.1298.83%pos 35160 (R-) Z98258.199.53%pos 24014 (F+) 
ABC12-7155449N6Z98258.198.98%pos 10568 (R+) AL031258.1298.68%pos 22086 (F-) 
ABC12-7919049M3 AL031258.1299.86%pos 19400 (F+) 
ABC13-1015822D20AL031258.1299.07%pos 35856 (R+)  
ABC13-1044822B16Z98258.199.3%pos 7810 (R+) AL031258.1298.43%pos 22698 (F-) 
ABC13-47488800N11 AL031258.1298.07%pos 32204 (F+) 
ABC13-47490200L7 Z98258.199.84%pos 19441 (F-) 
ABC13-47490200M5Z98258.199.41%pos 18380 (R-)  
ABC13-47617200E21 Z98258.199.31%pos 5030 (F-) 
ABC13-47629600G1 AL031258.12100%pos 15587 (F+) 
ABC13-47638800D17 AL031258.1298.14%pos 23430 (F+) 
ABC13-47641100J14AL031258.1297.75%pos 8903 (R+)  
ABC13-47659200E1AL031258.12100%pos 16777 (R-) Z98258.199.64%pos 6072 (F+) 
ABC13-47671900J8Z98258.1100%pos 14058 (R+) AL031258.12100%pos 24473 (F-) 
ABC13-47674000A20 AL031258.1298.04%pos 15588 (F+) 
ABC13-48553000C14AL031258.12100%pos 9418 (R+)  
ABC13-48563200O22 Z98258.199.78%pos 10768 (F-) 
ABC13-48591500P18AL031258.1298.51%pos 1772 (R+)  
ABC13-48609600P19 AL031258.1299.74%pos 26983 (F+) 
ABC13-48644500J5AL031258.12100%pos 29354 (R-) Z98258.198.64%pos 18148 (F+) 
ABC13-48646200I16AL031258.12100%pos 30786 (R+)  
ABC13-48735300F24 AL031258.1299.4%pos 32071 (F-) 
ABC13-48744900K9AL031258.1299.85%pos 19703 (R-) Z98258.199.22%pos 9421 (F+) 
ABC13-48827600C1AL031258.1299.84%pos 8869 (R+)  
ABC13-48845900H14 AL031258.12100%pos 33790 (F+) 
ABC13-48904000E23 AL031258.1299.86%pos 27451 (F-) 
ABC13-49739500I5Z98258.199.47%pos 396 (R+)  
ABC13-49741700K1 Z98258.199.85%pos 8239 (F-) 
ABC13-49745700B10Z98258.199.74%pos 387 (R+)  
ABC13-49755600K16AL031258.12100%pos 33212 (R-) Z98258.199.16%pos 23139 (F+) 
ABC13-49763900J17AL031258.1299.14%pos 20304 (R+)  
ABC13-49782300N24AL031258.1299.63%pos 30929 (R+)  
ABC13-700423C20AL031258.1298.61%pos 15606 (R+)  
ABC13-700442O12 Z98258.198.82%pos 21785 (F+) 
ABC13-926922O16 AL031258.1299.85%pos 27452 (F-) 
ABC13-986722M9 AL031258.1299.62%pos 13977 (F+) 
ABC14-1016814B4AL031258.12100%pos 22756 (R-)  
ABC14-1016914I6 AL031258.1299.81%pos 2757 (F-) 
ABC14-1018414L5Z98258.1100%pos 22571 (R-)  
ABC14-1019114B16AL031258.12100%pos 26982 (R+)  
ABC14-1145922D24 AL031258.1299.29%pos 5666 (F-) 
ABC14-50079500O12Z98258.198.54%pos 7951 (R+) AL031258.12100%pos 19765 (F-) 
ABC14-50080500C16AL031258.1299.41%pos 18192 (R+)  
ABC14-50099600K23 AL031258.1299.83%pos 5095 (F+) 
ABC14-50107900B14Z98258.1100%pos 21576 (R-)  
ABC14-50135400C14 AL031258.12100%pos 26721 (F+) 
ABC14-50145100O8AL031258.1299.71%pos 22337 (R-)  
ABC14-50149000H3AL031258.12100%pos 28217 (R-) Z98258.1100%pos 18712 (F+) 
ABC14-50155100P15Z98258.199.83%pos 7675 (R+)  
ABC14-50163900C14AL031258.12100%pos 24843 (R-)  
ABC14-50164300H24 AL031258.1299.81%pos 390 (F+) 
ABC14-50189000C24 Z98258.199.07%pos 27144 (F+) 
ABC14-50415000C3 AL031258.12100%pos 24353 (F+) 
ABC14-50415000H4 AL031258.1299.68%pos 24353 (F+) 
ABC14-50930700P6AL031258.1298.41%pos 32423 (R+)  
ABC14-50974200C16 AL031258.12100%pos 17359 (F+) 
ABC14-50977200O12 AL031258.12100%pos 17359 (F+) 
ABC14-50994200I20 AL031258.12100%pos 26719 (F+) 
ABC14-50997400E2AL031258.12100%pos 32648 (R-)  
ABC14-954614N22AL031258.12100%pos 22758 (R-)  
ABC14-955714M20Z98258.1100%pos 21489 (R+) AL031258.12100%pos 29728 (F-) 
ABC14-973414K13 AL031258.1299.8%pos 12927 (F+) 
ABC14-974814O2 AL031258.1298.95%pos 3581 (F-) 
ABC14-986214M1 AL031258.1299.83%pos 5094 (F+) 
ABC7-40266400G5AL031258.1299.29%pos 26666 (R-)  
ABC7-42054800H21 AL031258.1298.77%pos 25660 (F+) 
ABC7-42055600F18 AL031258.1297.71%pos 7880 (F+) 
ABC7-42369700E2Z98258.1100%pos 25297 (R+) AL031258.1298.41%pos 22756 (F-) 
ABC7-42401800P12Z98258.197.44%pos 2256 (R+) AL031258.12100%pos 9171 (F-) 
ABC7-42464500J15AL031258.1299.61%pos 4511 (R+)  
ABC7-42481100J17AL031258.1299.75%pos 7160 (R+)  
ABC7-42485900N8Z98258.1100%pos 8415 (R-)  
ABC7-42492500N10 AL031258.1299.32%pos 1517 (F-) 
ABC7-42501900A11AL031258.1299.58%pos 16129 (R+)  
ABC7-43044300O6Z98258.199.18%pos 27074 (R+) AL031258.12100%pos 36067 (F-) 
ABC7-43044900I21 AL031258.1299.84%pos 3559 (F+) 
ABC7-43047300K3 Z98258.198.45%pos 3138 (F-) 
ABC7-43069300A14Z98258.199.56%pos 7729 (R-)  
ABC7-43083500D14AL031258.12100%pos 29068 (R-)  
ABC7-43085200F22AL031258.1299.43%pos 17920 (R+)  
ABC7-43085500F8AL031258.1299.4%pos 17927 (R+)  
ABC7-43085800H5 Z98258.199.49%pos 22151 (F-) 
ABC7-498722C7AL031258.12100%pos 8896 (R-)  
ABC7-609622M16 AL031258.12100%pos 21633 (F+) 
ABC7-612022N11 AL031258.1299.35%pos 23583 (F-) 
ABC8-2137540L21 Z98258.1100%pos 19080 (F-) 
ABC8-40965900M10Z98258.199.6%pos 15069 (R+) AL031258.1299.02%pos 22062 (F-) 
ABC8-40971400D6 AL031258.1299.84%pos 17485 (F+) 
ABC8-41064800N18 AL031258.1299.86%pos 27508 (F+) 
ABC8-41096600O13 Z98258.199.8%pos 27745 (F-) 
ABC8-41118700A23AL031258.1299.43%pos 34315 (R-) Z98258.199.84%pos 25703 (F+) 
ABC8-41142100N10 AL031258.1299.85%pos 36619 (F-) 
ABC8-41144600J1AL031258.1299.24%pos 21954 (R-)  
ABC8-41152400M12AL031258.1298.38%pos 28438 (R-) Z98258.199.85%pos 20736 (F+) 
ABC8-41153300P22AL031258.1299.15%pos 28978 (R-) Z98258.1100%pos 19226 (F+) 
ABC8-41160700J17 Z98258.199.29%pos 4678 (F-) 
ABC8-41178100L10Z98258.199.56%pos 26062 (R-)  
ABC8-41184700E20AL031258.1299.48%pos 8646 (R-)  
ABC8-41186600G9AL031258.1299.35%pos 29953 (R+)  
ABC8-41198000B18 Z98258.198.38%pos 15887 (F+) 
ABC8-41198000P9AL031258.1298.1%pos 23361 (R-)  
ABC8-41199700M16AL031258.1299.86%pos 25759 (R-)  
ABC8-41210400B12 AL031258.1299.52%pos 31461 (F+) 
ABC8-41793500M18 Z98258.199.86%pos 5053 (F-) 
ABC8-42110100G11AL031258.1297.87%pos 23240 (R+)  
ABC8-42559000C7 AL031258.1297.45%pos 14293 (F-) 
ABC8-42998400H21 Z98258.199.26%pos 14498 (F+) 
ABC8-43009800J24 Z98258.1100%pos 22673 (F-) 
ABC8-43036400N15AL031258.1298.55%pos 17771 (R-)  
ABC8-43743600A9Z98258.199.85%pos 11323 (R+)  
ABC8-43758800N9 AL031258.1299.24%pos 11783 (F+) 
ABC8-43776300B18 AL031258.1299.85%pos 27456 (F+) 
ABC8-43783700J17 AL031258.1299.74%pos 6550 (F+) 
ABC8-43786900M8 Z98258.199.36%pos 6828 (F-) 
ABC8-683522A6Z98258.198.75%pos 13874 (R+) AL031258.1299.18%pos 21884 (F-) 
ABC8-773822B22Z98258.1100%pos 25431 (R-)  
ABC8-788422F12 AL031258.1299.17%pos 36627 (F-) 
ABC8-791522J13 Z98258.1100%pos 1221 (F-) 
ABC9-1268202O22 Z98258.1100%pos 22217 (F-) 
ABC9-41298700C14AL031258.1299.45%pos 18580 (R-)  
ABC9-43350500L17Z98258.1100%pos 17901 (R+) AL031258.1299.74%pos 25409 (F-) 
ABC9-43351800B3AL031258.12100%pos 17281 (R-) AL031258.1297.74%pos 17281 (F-) 
ABC9-43813600L13AL031258.1298.49%pos 30250 (R+)  
ABC9-43831700B14AL031258.1298.78%pos 15831 (R+)  
ABC9-43838100D21AL031258.1297.72%pos 30276 (R+)  
ABC9-43841100M17Z98258.199.71%pos 1004 (R-)  
ABC9-43876100G4 Z98258.1100%pos 10535 (F+) 
ABC9-43905300H5 AL031258.1299.2%pos 8572 (F+) 
ABC9-43906400E17AL031258.1299.72%pos 10583 (R-) Z98258.1100%pos 87 (F+) 
ABC9-43917700M1Z98258.1100%pos 22642 (R+)  
ABC9-43927100L21 AL031258.12100%pos 28298 (F-) 
ABC9-43944100E24AL031258.1299.72%pos 6475 (R+)  
ABC9-43950300I4AL031258.12100%pos 35347 (R-) Z98258.1100%pos 23198 (F+) 
ABC9-43956100M19 Z98258.1100%pos 7759 (F-) 
ABC9-43985800K24 Z98258.1100%pos 7770 (F-) 
ABC9-43991600A23 AL031258.1298.79%pos 30681 (F+) 
ABC9-44002900K23Z98258.1100%pos 22651 (R+)  
ABC9-44004800D4AL031258.1299.86%pos 14677 (R-)  
ABC9-44012700G16AL031258.1299.46%pos 5194 (R-)  
ABC9-44016700N4 AL031258.12100%pos 8612 (F+) 
ABC9-44032400B9AL031258.1299.83%pos 35336 (R-) Z98258.1100%pos 23205 (F+) 
ABC9-45238700D12AL031258.1298.57%pos 19558 (R-) Z98258.197.06%pos 9524 (F+) 
ABC9-45366600E12AL031258.1299.05%pos 34317 (R-)  
ABC9-45429600D12AL031258.1299.84%pos 17527 (R-) Z98258.197.99%pos 8187 (F+) 
ABC9-46005200L7AL031258.1299.86%pos 20231 (R-)  
WI2-0426N12AL031258.12100%pos 19668 (R+)  
WI2-0608N05 Z98258.1100%pos 24575 (F-) 
WI2-0785G02 Z98258.199.01%pos 25319 (F+) 
WI2-0904L13Z98258.198.36%pos 25474 (R+) AL031258.1299.54%pos 30978 (F-) 
Z98258.199.53%pos 25470 (R+) AL031258.1299.82%pos 30945 (F-) 
WI2-0904M14Z98258.199.69%pos 25470 (R+) AL031258.1299.83%pos 30979 (F-) 
Z98258.1100%pos 25470 (R+) AL031258.1299.7%pos 30976 (F-) 
WI2-0954G14AL031258.12100%pos 23228 (R+)  
WI2-1053F12Z98258.199.27%pos 14143 (R-)  
WI2-1268B14AL031258.12100%pos 34106 (R+)  
WI2-1430B12 Z98258.198.29%pos 11133 (F+) 
WI2-1430M22AL031258.1297.04%pos 22395 (R-) Z98258.198.88%pos 11133 (F+) 
WI2-1430M24 Z98258.198.22%pos 11166 (F+) 
WI2-1488G24AL031258.1299.62%pos 9634 (R+)  
WI2-1488O10AL031258.12100%pos 9622 (R+)  
WI2-1718G24 AL031258.1298.82%pos 36205 (F+) 
WI2-1719P03Z98258.197.27%pos 28316 (R-)  
WI2-1719P08Z98258.197.45%pos 28341 (R-)  
WI2-1761L09 AL031258.12100%pos 36232 (F+) 
WI2-1859A17Z98258.197.36%pos 25445 (R+)  
WI2-1940K23Z98258.199.19%pos 27166 (R+)  
WI2-1974N21Z98258.199.59%pos 12685 (R-)  
WI2-2044H06AL031258.12100%pos 24000 (R+)  
WI2-2174A22 AL031258.1299.78%pos 16612 (F-) 
WI2-2449P17 AL031258.1298.2%pos 462 (F+) 
WI2-2642F13Z98258.1100%pos 10484 (R-)  
WI2-2877L01AL031258.1298.94%pos 4421 (R+)  
WI2-3153H18AL031258.1299.47%pos 35242 (R-)  
WI2-3175B14 Z98258.198.11%pos 22535 (F-) 
WI2-3227C20 AL031258.12100%pos 36820 (F-) 
WI2-3398A02 AL031258.12100%pos 16181 (F+) 
WI2-3453P07AL031258.1299.7%pos 24531 (R+)  
WI2-3709C07 AL031258.1299.64%pos 16144 (F+) 
WI2-3779K24AL031258.1299.64%pos 16025 (R+)  


                        

                        

                        	

down arrow  Repeats




acc
start
stop
repeat id
strand
name
family
class




Z98258.1
24724
24893
10620310
+
AluSx
Alu
SINE




Z98258.1
24899
25210
10620312
+
AluY
Alu
SINE




Z98258.1
25446
25517
10620313
-
L2b

L2




Z98258.1
25831
25999
10620314
-
MLT1C
ERVL-MaLR
LTR




Z98258.1
26039
26196
10620315
-
AluJb
Alu
SINE




Z98258.1
26197
26227
10620316
+
(TTA)n






Z98258.1
26229
26501
10620317
-
AluY
Alu
SINE




Z98258.1
26504
26795
10620318
-
AluSx
Alu
SINE




Z98258.1
26796
26988
10620319
-
AluSx
Alu
SINE




Z98258.1
26989
27284
10620320
+
AluY
Alu
SINE




Z98258.1
27285
27393
10620319
-
AluSx
Alu
SINE




Z98258.1
28654
28831
10620321
+
THE1D
ERVL-MaLR
LTR




Z98258.1
24430
24723
10620311
+
AluSx
Alu
SINE




Z98258.1
24307
24429
10620310
+
AluSx
Alu
SINE




Z98258.1
23546
23845
10620309
-
AluSx
Alu
SINE




Z98258.1
23235
23536
10620308
-
AluY
Alu
SINE




Z98258.1
23006
23070
10620307
+
L2b

L2




Z98258.1
22188
22212
10620306
+
GC_rich

Low_complexity




Z98258.1
20964
20991
10620305
+
(CAAA)n

Simple_repeat




Z98258.1
20682
20961
10620304
+
AluY
Alu
SINE




Z98258.1
20321
20609
10620303
-
AluSx
Alu
SINE




Z98258.1
20012
20317
10620302
-
AluY
Alu
SINE




Z98258.1
18342
18627
10620301
-
AluSx
Alu
SINE




Z98258.1
9756
9779
101643143
N
DUST






Z98258.1
10108
10167
101643144
N
DUST






Z98258.1
10590
10628
101643145
N
DUST






Z98258.1
11591
11598
101643146
N
DUST






Z98258.1
13312
13330
101643147
N
DUST






Z98258.1
13542
13552
101643148
N
DUST






Z98258.1
14311
14320
101643149
N
DUST






Z98258.1
17935
17941
101643150
N
DUST






Z98258.1
18185
18198
101643151
N
DUST






Z98258.1
18342
18350
101643152
N
DUST






Z98258.1
19364
19448
101643153
N
DUST






Z98258.1
20016
20032
101643154
N
DUST






Z98258.1
20181
20191
101643155
N
DUST






Z98258.1
20329
20335
101643156
N
DUST






Z98258.1
20549
20555
101643157
N
DUST






Z98258.1
20964
20992
101643158
N
DUST






Z98258.1
23235
23255
101643159
N
DUST






Z98258.1
23546
23564
101643160
N
DUST






Z98258.1
24712
24723
101643161
N
DUST






Z98258.1
25025
25037
101643162
N
DUST






Z98258.1
25187
25210
101643163
N
DUST






Z98258.1
26039
26048
101643164
N
DUST






Z98258.1
26208
26227
101643165
N
DUST






Z98258.1
26382
26388
101643166
N
DUST






Z98258.1
26806
26814
101643167
N
DUST






Z98258.1
27270
27282
101643168
N
DUST






Z98258.1
27499
27563
101643169
N
DUST






Z98258.1
28642
28648
101643170
N
DUST






Z98258.1
18183
18333
10620300
-
AluSx
Alu
SINE




Z98258.1
17082
17567
10620299
+
MER54B
ERVL
LTR




Z98258.1
16739
17089
10620298
+
MER54A
ERVL
LTR




Z98258.1
14306
14601
10620297
-
AluSx
Alu
SINE




Z98258.1
13536
13842
10620296
-
AluSx
Alu
SINE




Z98258.1
10112
10167
10620295
+
(CCCCG)n

Simple_repeat




Z98258.1
9753
9778
10620294
+
GC_rich

Low_complexity




Z98258.1
8910
8947
10620293
+
(CTGGGG)n






Z98258.1
8854
8943
10620292
+
G-rich






Z98258.1
8659
8678
10620291
+
(CGGGGG)n

Simple_repeat




Z98258.1
8512
8559
10620290
-
L2b

L2




Z98258.1
1184
1492
10620289
+
AluSx
Alu
SINE




Z98258.1
521
589
10620288
+
L2
L2
LINE




Z98258.1
1463
1496
101643132
N
DUST






Z98258.1
2964
3038
101643133
N
DUST






Z98258.1
3934
3949
101643134
N
DUST






Z98258.1
4958
4965
101643135
N
DUST






Z98258.1
4980
4987
101643136
N
DUST






Z98258.1
5700
5758
101643137
N
DUST






Z98258.1
6206
6242
101643138
N
DUST






Z98258.1
7415
7427
101643139
N
DUST






Z98258.1
8653
8707
101643140
N
DUST






Z98258.1
8811
8963
101643141
N
DUST






Z98258.1
9319
9361
101643142
N
DUST






AL031258.12
7591
7602
10543385
+
MER4D
ERV1
LTR




AL031258.12
7625
7885
10543382
-
L1MB4

L1




AL031258.12
7895
7994
10543388
-
L1M3

L1




AL031258.12
8004
8297
10543389
-
AluSx
Alu
SINE




AL031258.12
8298
8432
10543390
-
AluSx
Alu
SINE




AL031258.12
8442
8510
10543391
-
L1ME1

L1




AL031258.12
8511
8796
10543392
+
AluJb
Alu
SINE




AL031258.12
8797
9569
10543391
-
L1ME1

L1




AL031258.12
9570
9678
10543393
-
L1M5

L1




AL031258.12
9679
9969
10543394
-
AluJb
Alu
SINE




AL031258.12
9970
10029
10543393
-
L1M5

L1




AL031258.12
10021
10076
10543395
-
L1MB7

L1




AL031258.12
10097
10230
10543396
+
AluSx
Alu
SINE




AL031258.12
10231
10530
10543397
+
AluSx
Alu
SINE




AL031258.12
10531
10679
10543398
-
L1MB8

L1




AL031258.12
10709
11025
10543398
-
L1MB8

L1




AL031258.12
11048
11336
10543399
+
AluY
Alu
SINE




AL031258.12
11372
11497
10543400
-
AluY
Alu
SINE




AL031258.12
11500
11803
10543401
-
AluY
Alu
SINE




AL031258.12
11805
12112
10543402
-
AluSx
Alu
SINE




AL031258.12
12123
12232
10543403
-
AluJb
Alu
SINE




AL031258.12
12554
12745
10543398
-
L1MB8

L1




AL031258.12
13670
13775
10543404
-
MIRc
MIR
SINE




AL031258.12
13934
14241
10543405
+
MER54B
ERVL
LTR




AL031258.12
18858
18989
10543406
-
MIR
MIR
SINE




AL031258.12
20417
20824
10543407
+
G-rich






AL031258.12
22099
22204
10543408
+
(CCCCAG)n

Simple_repeat




AL031258.12
23416
23448
10543409
+
(CCCCCA)n






AL031258.12
24035
24161
10543410
+
MLT1C
ERVL-MaLR
LTR




AL031258.12
24162
24472
10543411
+
AluSx
Alu
SINE




AL031258.12
24478
24609
10543412
+
FLAM_C
Alu
SINE




AL031258.12
24610
24845
10543410
+
MLT1C
ERVL-MaLR
LTR




AL031258.12
24846
25139
10543413
+
AluSx
Alu
SINE




AL031258.12
7303
7590
10543387
+
AluSx
Alu
SINE




AL031258.12
7097
7302
10543385
+
MER4D
ERV1
LTR




AL031258.12
6795
7096
10543386
+
AluSx
Alu
SINE




AL031258.12
6658
6794
10543385
+
MER4D
ERV1
LTR




AL031258.12
6317
6589
10543384
+
MER49
ERV1
LTR




AL031258.12
6201
6316
10543382
-
L1MB4

L1




AL031258.12
5906
6200
10543383
-
AluSx
Alu
SINE




AL031258.12
5668
5905
10543382
-
L1MB4

L1




AL031258.12
5415
5667
10543381
-
AluSx
Alu
SINE




AL031258.12
4269
4331
10543380
-
L2b

L2




AL031258.12
4098
4195
10543379
+
MIRb
MIR
SINE




AL031258.12
3125
3419
10543378
+
AluY
Alu
SINE




AL031258.12
2961
3124
10543377
+
AluSx
Alu
SINE




AL031258.12
2638
2929
10543376
-
AluSx
Alu
SINE




AL031258.12
2332
2626
10543375
-
AluSx
Alu
SINE




AL031258.12
2129
2331
10543372
-
Ricksha_0
MULE-MuDR
DNA




AL031258.12
1991
2128
10543374
+
FLAM_C
Alu
SINE




AL031258.12
1932
1990
10543372
-
Ricksha_0
MULE-MuDR
DNA




AL031258.12
1620
1931
10543373
+
AluSx
Alu
SINE




AL031258.12
1591
1619
10543372
-
Ricksha_0
MULE-MuDR
DNA




AL031258.12
741
1033
10543371
+
AluJb
Alu
SINE




AL031258.12
511
581
10543369
+
THE1D
ERVL-MaLR
LTR




AL031258.12
200
510
10543370
-
AluSx
Alu
SINE




AL031258.12
1
199
10543369
+
THE1D
ERVL-MaLR
LTR




AL031258.12
25142
25436
10543414
+
AluY
Alu
SINE




AL031258.12
25437
25460
10543415
+
MLT1B
ERVL-MaLR
LTR




AL031258.12
26322
26644
10543416
-
AluSx
Alu
SINE




AL031258.12
26648
26950
10543417
-
AluSx
Alu
SINE




AL031258.12
29356
29492
10543418
+
AluJb
Alu
SINE




AL031258.12
29493
29794
10543419
+
AluSx
Alu
SINE




AL031258.12
29795
29924
10543418
+
AluJb
Alu
SINE




AL031258.12
29964
30261
10543420
+
AluSx
Alu
SINE




AL031258.12
30264
30592
10543421
+
AluY
Alu
SINE




AL031258.12
30594
30648
10543422
+
MER49
ERV1
LTR




AL031258.12
30691
30996
10543423
+
MER4D
ERV1
LTR




AL031258.12
31884
32119
10543424
+
(CTCA)n






AL031258.12
32121
32279
10543425
+
(TTCA)n






AL031258.12
37209
37248
10543426
-
MIR3
MIR
SINE




AL031258.12
204
228
103391269
N
DUST






AL031258.12
1746
1752
103391270
N
DUST






AL031258.12
1902
1984
103391271
N
DUST






AL031258.12
2114
2130
103391272
N
DUST






AL031258.12
2332
2343
103391273
N
DUST






AL031258.12
3108
3114
103391274
N
DUST






AL031258.12
3406
3416
103391275
N
DUST






AL031258.12
4616
4625
103391276
N
DUST






AL031258.12
5415
5432
103391277
N
DUST






AL031258.12
5906
5925
103391278
N
DUST






AL031258.12
7076
7094
103391279
N
DUST






AL031258.12
7583
7598
103391280
N
DUST






AL031258.12
7609
7615
103391281
N
DUST






AL031258.12
8004
8015
103391282
N
DUST






AL031258.12
9101
9107
103391283
N
DUST






AL031258.12
9203
9228
103391284
N
DUST






AL031258.12
9983
9994
103391285
N
DUST






AL031258.12
10511
10530
103391286
N
DUST






AL031258.12
11167
11176
103391287
N
DUST






AL031258.12
11325
11336
103391288
N
DUST






AL031258.12
11348
11385
103391289
N
DUST






AL031258.12
11500
11523
103391290
N
DUST






AL031258.12
11805
11830
103391291
N
DUST






AL031258.12
13335
13341
103391292
N
DUST






AL031258.12
14565
14572
103391293
N
DUST






AL031258.12
14930
14973
103391294
N
DUST






AL031258.12
16699
16724
103391295
N
DUST






AL031258.12
16831
16923
103391296
N
DUST






AL031258.12
17666
17737
103391297
N
DUST






AL031258.12
20409
21014
103391298
N
DUST






AL031258.12
21502
21557
103391299
N
DUST






AL031258.12
22098
22204
103391300
N
DUST






AL031258.12
23026
23090
103391301
N
DUST






AL031258.12
23416
23466
103391302
N
DUST






AL031258.12
23552
23741
103391303
N
DUST






AL031258.12
24598
24606
103391304
N
DUST






AL031258.12
26322
26345
103391305
N
DUST






AL031258.12
26648
26668
103391306
N
DUST






AL031258.12
28023
28118
103391307
N
DUST






AL031258.12
29774
29795
103391308
N
DUST






AL031258.12
30545
30590
103391309
N
DUST






AL031258.12
31678
31761
103391310
N
DUST






AL031258.12
31883
32302
103391311
N
DUST






AL031258.12
32891
32954
103391312
N
DUST






AL031258.12
33682
33739
103391313
N
DUST