Alignment last updated: 08/02/2013 11:14:00
Join Legend
Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Alignment for FO181539.6 and AUXG01000150.1
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FO181539.6 Human DNA sequence from clone ABC12-49055600O16 on chromosome 16, complete sequence [htgs_phase3]
Length: 5,740 bp
AUXG01000150.1 Homo sapiens scaf00244_reg01_ctg01, whole genome shotgun sequence [whole_genome_shotgun]
Length: 56,150 bp
Alignment Summary
Join evaluation: Alignment count: 1
|
(contained sequence)| Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time | Id | Alignment | Releases |
| A | 5740 | 28762 | + | + | chenhc | Taxid 9606 chrom 16 Primary assembly | 2013-08-02 11:14:00.203 | 108365 | 110160 | GRCh38 |
Alignment 1 of 1
FO181539.6 : - : 5740..1 AUXG01000150.1 : - : 28761..23025 Mismatches = 7, Gaps = 2, Length = 5740 Percent identity = 99.88% Score = 1.054e+04 bits (5708), Expect = 0 0 BAC and 0 Fosmid bridging clones. 0 BAC and 0 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. FO181539.6 <5740 ttggagctggaggggctcttggagatgatttgcaaatcctggcgggactgtgaggcccgc 5681 AUXG01000150.1 <28761 ............................................................ 28702 FO181539.6 <5680 cacacccctccttctttctgccccaggtggtcccaaggccgcctgcccttccacaccggc 5621 AUXG01000150.1 <28701 ............................................................ 28642 FO181539.6 <5620 agcctccagcgctccagggctggggaccgcccccgtccatgctgcgtgcgcactccgagc 5561 AUXG01000150.1 <28641 ............................................................ 28582 FO181539.6 <5560 ttttcctcggcgaggaggagggctcagagggtcagctgcgccccggccagagcaggagct 5501 AUXG01000150.1 <28581 ............................................................ 28522 FO181539.6 <5500 gcgggaagaccctggagagcagggctgggagtggggatctggcagtgtggggccaagaaa 5441 AUXG01000150.1 <28521 ............................................................ 28462 FO181539.6 <5440 aagggctggggcggaaatccagagacagaggcagagaggggagcatctgggatcgtgggg 5381 AUXG01000150.1 <28461 ............................................................ 28402 FO181539.6 <5380 agggttcgtggagagtgaggcaggggaatggagggagtaggagtctggggaaagtgagga 5321 AUXG01000150.1 <28401 ............................................................ 28342 FO181539.6 <5320 ttttgaagtgagagagtccgcttgggctgggcgtggagggccgagggtggagtggggctg 5261 AUXG01000150.1 <28341 .........................................................t.. 28282 FO181539.6 <5260 agggacgaggtgggttaaggtgctggtggggaaggactagagcttccaggagggtctgaa 5201 AUXG01000150.1 <28281 ............................................................ 28222 FO181539.6 <5200 ggcggaggtggaggtcggacagcacaagtgagagtgagggggtctgcaggtagagctggc 5141 AUXG01000150.1 <28221 ..............................................t............. 28162 FO181539.6 <5140 attggaggggtgggaacgtggacggcggctgagcggggggcgcgtgcaggtcggagccgg 5081 AUXG01000150.1 <28161 ............................................................ 28102 FO181539.6 <5080 caggtgaggagccagggtctaagctagggcccggggtccaaaggaaaggctttcagatct 5021 AUXG01000150.1 <28101 ............................................................ 28042 FO181539.6 <5020 gagctccgcggctctggcggcggtggagctgggagcccgcggtggccggctggggacggg 4961 AUXG01000150.1 <28041 ............................................................ 27982 FO181539.6 <4960 ggcaggagcagaggggtcgcgccgcggccactggaacccgcggctgctggtcctgggctc 4901 AUXG01000150.1 <27981 ........................................t................... 27922 FO181539.6 <4900 ggcgatgcgggtgcacctgggcgggctggccggcgcggctgcgctgaccggggcgctcag 4841 AUXG01000150.1 <27921 ............................................................ 27862 FO181539.6 <4840 ctttgtgctcctggcggccgccatcggcacggacttctggtatatcattgacaccgagcg 4781 AUXG01000150.1 <27861 ............................................................ 27802 FO181539.6 <4780 gctggagaggactggcccgggggcgcaggacctgctggggtccatcaatcgcagccagcc 4721 AUXG01000150.1 <27801 ............................................................ 27742 FO181539.6 <4720 cgagcctctgagctcccactccggcctctggcggacctgccggggtaagggtgcaccccg 4661 AUXG01000150.1 <27741 ............................................................ 27682 FO181539.6 <4660 tggctgggagctgtggctgcgaacgccccctgcgcggtgccctgctcccttgggacctgt 4601 AUXG01000150.1 <27681 ............................................................ 27622 FO181539.6 <4600 tgcttggcgcgcactcctcccccaagtccctaaaatacaatgtctagggactcgggggga 4541 AUXG01000150.1 <27621 ............................................................ 27562 FO181539.6 <4540 aggtgagcagaaggccgggactgcgaaaacccttccgagaggcacccggctgcgatccca 4481 AUXG01000150.1 <27561 ............................................................ 27502 FO181539.6 <4480 actgctctagctctccccgcgccctccccgggtggggcacttagggtgagcatgggggca 4421 AUXG01000150.1 <27501 ............................................................ 27442 FO181539.6 <4420 aagccgcagacgagggtgctgcacagaactccggggtcctgcacccatggattcctccgt 4361 AUXG01000150.1 <27441 ............................................................ 27382 FO181539.6 <4360 cctatccagtgcagagcccgtgcacaccgctgatgaaccccttcaggctggagaacgtga 4301 AUXG01000150.1 <27381 ............................................................ 27322 FO181539.6 <4300 cagtcagcgaatcgagccggcaacttctcagtgagtccggggagggtgaggatggaggga 4241 AUXG01000150.1 <27321 ............................................................ 27262 FO181539.6 <4240 gcgccccggtcctagccgtgagttctggagcctttcccaaaacagccgggcttcggggcc 4181 AUXG01000150.1 <27261 ............................................................ 27202 FO181539.6 <4180 tgcggagagggcggctggggtggcctctgacagcccagcctgagaatggagtgggcttaa 4121 AUXG01000150.1 <27201 ............................................................ 27142 FO181539.6 <4120 gaccggggggcagggtctctcctgatccacctgtaacgttttgtggtttagggttcattc 4061 AUXG01000150.1 <27141 ............................................................ 27082 FO181539.6 <4060 agctcacgttgactaatggctttctttgcaccgttttgatggatggttaagacacaggcc 4001 AUXG01000150.1 <27081 ............................................................ 27022 FO181539.6 <4000 atcccctcaaggggctcacagtggtgctgggacaaatgtggagacgcgcagttagagtcc 3941 AUXG01000150.1 <27021 ............................................................ 26962 FO181539.6 <3940 agcagcgtgaggaagggaaggtgggaagcccctgcagggacctaaattagcctcgggagg 3881 AUXG01000150.1 <26961 ............................................................ 26902 FO181539.6 <3880 tgaatggtgaaagagaggtctcattccacagattccatgccagcgttgtttgtattcaca 3821 AUXG01000150.1 <26901 ............................................................ 26842 FO181539.6 <3820 ttgcctagaacaagggctttgcagtagtggggtgcgatagaaatttgcatataaatatat 3761 AUXG01000150.1 <26841 ............................................................ 26782 FO181539.6 <3760 gattggagccaggcaattaggaggtgggaacagcccctcctctcaggtccactgcgtccc 3701 AUXG01000150.1 <26781 ............................................................ 26722 FO181539.6 <3700 tcttattcctggttggttcttagtacccagctcagtgcctggaactcagtaaaagttgtg 3641 AUXG01000150.1 <26721 ............................................................ 26662 FO181539.6 <3640 aggactgaaagcaagaaaggaaatgggatgaatgagcatttgtggagggagggaaataaa 3581 AUXG01000150.1 <26661 ............................................................ 26602 FO181539.6 <3580 cctaacagttcaattcattgaggcttgagataagccagacgtggagcgaactgcttttca 3521 AUXG01000150.1 <26601 ............................................................ 26542 FO181539.6 <3520 tctatgtcttcatttgattcccacagccacaccctatgaagttattagtatcgtcatttc 3461 AUXG01000150.1 <26541 ............................................................ 26482 FO181539.6 <3460 tgccttcatttttccaatgaggaggcccagagaggttctgtaggaggatctgatgaggaa 3401 AUXG01000150.1 <26481 ............................................................ 26422 FO181539.6 <3400 atgaagactgagtttcatagactttgaaaatgtgggcaggttttttttttttttttgaga 3341 AUXG01000150.1 <26421 ......................................................--.... 26364 FO181539.6 <3340 cagggtcttgctctgttgcccaggctggagtacagtggcataatcttggctcactgcaac 3281 AUXG01000150.1 <26363 ............................................................ 26304 FO181539.6 <3280 ctcctcctcccaggttcaagcgattctcctgtctcagcctcctgagtagctgaaactaca 3221 AUXG01000150.1 <26303 ............................................................ 26244 FO181539.6 <3220 ggtgcctgcctccacgtcgggctaatttttcatatttctagtacaaatggagtttcacaa 3161 AUXG01000150.1 <26243 ............................................................ 26184 FO181539.6 <3160 tgttagccaggctggtctcgaactcctgacctcaagtgatctgcccatctcagccttcca 3101 AUXG01000150.1 <26183 ............................................................ 26124 FO181539.6 <3100 aagtgctgggattacaggtgtgagccactgcattggtatcagtttttttttaatagtgat 3041 AUXG01000150.1 <26123 ............................................................ 26064 FO181539.6 <3040 aggaaacatagttactatgtttcccaggctggtcttgaactcctgggtcaagtgatgttc 2981 AUXG01000150.1 <26063 ............................................................ 26004 FO181539.6 <2980 ctgccttggcctcccaaagtcttgggatttcaggtgtgagccactgtgcctggccttctc 2921 AUXG01000150.1 <26003 ............................................................ 25944 FO181539.6 <2920 cctccactcaaccctacccagagacagggtcttgttctgttgcccaggctggaatgcagt 2861 AUXG01000150.1 <25943 ............................................................ 25884 FO181539.6 <2860 ggcacggtcttagctcactgcagcctcaaactcctaagctcaagcaatcttcctgcctta 2801 AUXG01000150.1 <25883 ............................................................ 25824 FO181539.6 <2800 gtctctcaaaagtgctgagattataggcatgagcagtttttgatagacttactgaggctg 2741 AUXG01000150.1 <25823 ............................................................ 25764 FO181539.6 <2740 gggataaaaaaataaagacaagtgcctagcatggcccacaaggcttggtagggtccctct 2681 AUXG01000150.1 <25763 ............................................................ 25704 FO181539.6 <2680 ccagccccattctccgctttactcctttctttccagctgtgctggccttggccagttctt 2621 AUXG01000150.1 <25703 ............................................................ 25644 FO181539.6 <2620 ggaacatgctaagtttcctcctgccacaaatattttgcacatgctgttccctccacctgg 2561 AUXG01000150.1 <25643 .........c...........................................t...... 25584 FO181539.6 <2560 aatctccctgcttttatcccaccaacttgacttggctaactgctaagtgcaaattgtatg 2501 AUXG01000150.1 <25583 ............................................................ 25524 FO181539.6 <2500 acttttttgtggggtggggtttaaatctgactccctcattagattgaaagctccatgggg 2441 AUXG01000150.1 <25523 ............................................................ 25464 FO181539.6 <2440 acaaggaccatgtctatcttgccactgctgaattcccaatatttagcatagaacctggca 2381 AUXG01000150.1 <25463 ............................................................ 25404 FO181539.6 <2380 catagtagcccatgagtcaaagtttgctgaacaaacatgttagtgaatgcaaattatatt 2321 AUXG01000150.1 <25403 ............................................................ 25344 FO181539.6 <2320 atattgtaggtggagctcaatatatgtatttattgtatgaatatatgggtttatggtgaa 2261 AUXG01000150.1 <25343 ............................................................ 25284 FO181539.6 <2260 ccagaactgtttctctaaagtccagaggcatgctgggaaatattgaacaactggatctct 2201 AUXG01000150.1 <25283 ............................................................ 25224 FO181539.6 <2200 gcaaaattaaaagaaaaaaaaaagccctggtttgtagcatttgcctatttctgtggtgca 2141 AUXG01000150.1 <25223 ............................................................ 25164 FO181539.6 <2140 aatacttccaccatggccaatttcaagacaccaacatgatgttacctggctcacaaaatt 2081 AUXG01000150.1 <25163 ............................................................ 25104 FO181539.6 <2080 ctcaaaagcttaactggctcttgtgagttgatatgagtcagctccagcacaccactgagt 2021 AUXG01000150.1 <25103 ............................................................ 25044 FO181539.6 <2020 taagttccaccaaaggagacataccctagacacctggaatgtgtgggagttgaggaaagg 1961 AUXG01000150.1 <25043 ............................................................ 24984 FO181539.6 <1960 tggaggtaccgtgtgctctgttctgagccccaaactgcacaaggggaaactgtgagtgtc 1901 AUXG01000150.1 <24983 ...................................................t........ 24924 FO181539.6 <1900 tttgaagcactgtttcaagaattataagaattcggccaggcgtggtggctcatgtctgta 1841 AUXG01000150.1 <24923 ............................................................ 24864 FO181539.6 <1840 atcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagtttgagacca 1781 AUXG01000150.1 <24863 ............................................................ 24804 FO181539.6 <1780 gcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagcccggtgtgg 1721 AUXG01000150.1 <24803 ............................................................ 24744 FO181539.6 <1720 tgccacctgcctgtagtcccagctactcaggaggctgagttatgagaatcgcttgaacct 1661 AUXG01000150.1 <24743 ............................................................ 24684 FO181539.6 <1660 gggaggcagaggttgcagtgagctgagattgcaccactgcactccagtctgggcaacaga 1601 AUXG01000150.1 <24683 ............................................................ 24624 FO181539.6 <1600 gtgagactctctcaaaaaaaaaacaaaaaaaaagaatgataagaattccggtcatggaag 1541 AUXG01000150.1 <24623 ............................................................ 24564 FO181539.6 <1540 tgagggagatgagggtcatgtcccaggtaaaacccctacaaaacagaggccttctgtgat 1481 AUXG01000150.1 <24563 ............................................................ 24504 FO181539.6 <1480 cctgggataggtgtcttaacctctctgagcctcaatgttcacatccgtcaaaatgagatg 1421 AUXG01000150.1 <24503 ............................................................ 24444 FO181539.6 <1420 tggacaccatcaagggatatggttagacttccatgagagggaataaaaatggataaacaa 1361 AUXG01000150.1 <24443 ............................................................ 24384 FO181539.6 <1360 aacggaccttgcctaggaccagtcataaaggaatgaccagacttgtcagaaaggaatgac 1301 AUXG01000150.1 <24383 ............................................................ 24324 FO181539.6 <1300 ttgacatcgagtttccagacatatggtaagtgctcagtaagcatgagctctccctttgcc 1241 AUXG01000150.1 <24323 ............................................................ 24264 FO181539.6 <1240 cctccttccagcctccttctagaggtagtaacatcaatggagtgctgatcctttgccaag 1181 AUXG01000150.1 <24263 ............................................................ 24204 FO181539.6 <1180 ctgggtgtgcacattcagctgacttatcacatccatgggtcaattggatggctaaccaca 1121 AUXG01000150.1 <24203 ............................................................ 24144 FO181539.6 <1120 ataggcactgggctggcttcctcttcaatcttgacagtgcaacaaccatgcttgtttcag 1061 AUXG01000150.1 <24143 ............................................................ 24084 FO181539.6 <1060 gattttgagacagagcagaactcacatccacagtctattcactcgttcaccctcagtcct 1001 AUXG01000150.1 <24083 ..........a................................................. 24024 FO181539.6 <1000 agggctaacccgcagtttcaccaccaagtaggcatgtggccatgggcctttccttatttc 941 AUXG01000150.1 <24023 ............................................................ 23964 FO181539.6 <940 cttatacctctctgagcctcagttccctcctgtgcaaaatgaggataattgtcatctctt 881 AUXG01000150.1 <23963 ............................................................ 23904 FO181539.6 <880 tttgtaaggttattgtgaggctaaaacaggacagtgtatttaaagagcctaatgtggtgt 821 AUXG01000150.1 <23903 ............................................................ 23844 FO181539.6 <820 ctggcctccggaagtgtgctgtaagtggtagctgctattattcccattatatcctccatg 761 AUXG01000150.1 <23843 ............................................................ 23784 FO181539.6 <760 aaaaaggacaagctgccccttcataccatgtactccttgcaaatcacccccagaaagagc 701 AUXG01000150.1 <23783 ............................................................ 23724 FO181539.6 <700 ttttttttttttctccgcataatgtctttttcttccaaaatgaattttgagtttggtcca 641 AUXG01000150.1 <23723 ...........-................................................ 23665 FO181539.6 <640 agctcttctattatatgaagatgtttcattcctttaaggacctgctgcagaggccataga 581 AUXG01000150.1 <23664 ............................................................ 23605 FO181539.6 <580 ggagaagctagctgacaagcagcacgttcgacaagcagcatgttctctaagttcagcctc 521 AUXG01000150.1 <23604 ............................................................ 23545 FO181539.6 <520 ctagataaatcctggtgggggtgtatgggaagaaaccttgatttttcctctaagaaaacc 461 AUXG01000150.1 <23544 ............................................................ 23485 FO181539.6 <460 ctcacagagagaccacttcagtgccaagtaatttactgtaatcacctggcagatggagga 401 AUXG01000150.1 <23484 ............................................................ 23425 FO181539.6 <400 ctgttagggaagtcccatgatctaacttgcctcctgatgtgatttggctgtgcccccacc 341 AUXG01000150.1 <23424 ............................................................ 23365 FO181539.6 <340 caaatgtcatcttgaattgtagcttccttaattcccatgtgttgtgggagggatctggtg 281 AUXG01000150.1 <23364 ............................................................ 23305 FO181539.6 <280 ggaggtaattgaatcattggggcaggtctttcccatactgttcttgtgatagtgaacaag 221 AUXG01000150.1 <23304 ............................................................ 23245 FO181539.6 <220 tctcctgagatctgatggttttataaagggggttcccctgcacaaaccctcctgcctgcc 161 AUXG01000150.1 <23244 ............................................................ 23185 FO181539.6 <160 gccatgtaagacgtgactttgctcctcattcaccttcagccaggattgtgaggcctcccc 101 AUXG01000150.1 <23184 ............................................................ 23125 FO181539.6 <100 agccatgtggaactgtgagtccattaaacctctttcctttataaattacccagtctcagg 41 AUXG01000150.1 <23124 ............................................................ 23065 FO181539.6 <40 tgtgtctttttctttttcttttcttttcttcttcttcttc 1 AUXG01000150.1 <23064 ........................................ 23025
Events
| Id | Type | Date | Whodid | Comment |
| 277868 | InitHasAlign | 08/02/2013 10:21:44 | cgi_chen | find_overlap 1.35 2010/07/22 15:00:43 boukn Exp $ built Apr 29 2013. Toolkit wrapper using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib Info: Blast Including ID: 528165218 Info: Running Blast Filter: 0 Info: Determined ID: gi|528165218 needs Merging. Info: Blast Warning: Empty Query Set Info: Determined ID: gi|528165218 needs Merging. Info: Blast Warning: Empty Query Set Info: Determined ID: gi|528165218 needs Merging. Info: Best Rank: 2 in for 528165218 of 1 Info: NG returned 1 alignments from TPF submission |
| 277885 | CreateSwitchPt | 08/02/2013 11:14:00 | chenhc | tpf_m_BuilderId: t Toolkit wrapper version: built Aug 1 2013 using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib |
BAC Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| CH17-171B14 | AUXG01000150.1 | 98.4% | pos 9759 (F-) | |||
| CTD-2532M14 | AUXG01000150.1 | 100% | pos 43713 (R+) | |||
Fosmid Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| ABC10-1584270D3 | AUXG01000150.1 | 100% | pos 47332 (F+) | |||
| ABC10-44078500M11 | AUXG01000150.1 | 99.88% | pos 42949 (R+) | |||
| ABC10-44117500H23 | AUXG01000150.1 | 100% | pos 9722 (F-) | |||
| ABC10-44455000D9 | AUXG01000150.1 | 100% | pos 9742 (F-) | |||
| ABC10-44476900O20 | FO181539.6 | 99.72% | pos 3966 (F-) | |||
| AUXG01000150.1 | 99.72% | pos 26987 (F-) | ||||
| ABC10-44502800A2 | AUXG01000150.1 | 100% | pos 41672 (R+) | |||
| ABC10-44559100E22 | AUXG01000150.1 | 100% | pos 47310 (F+) | |||
| ABC10-44575700P8 | AUXG01000150.1 | 100% | pos 42735 (F+) | |||
| ABC10-44659800K16 | AUXG01000150.1 | 100% | pos 51273 (R+) | |||
| ABC10-44705900L16 | AUXG01000150.1 | 100% | pos 42855 (F+) | |||
| ABC10-44709100K2 | FO181539.6 | 100% | pos 3451 (F-) | |||
| AUXG01000150.1 | 100% | pos 26472 (F-) | ||||
| ABC10-45506600N9 | AUXG01000150.1 | 99.7% | pos 36022 (F+) | |||
| ABC11-47160800K13 | FO181539.6 | 100% | pos 1240 (F-) | |||
| ABC11-47249500N8 | AUXG01000150.1 | 100% | pos 32905 (F+) | |||
| ABC11-47409000L9 | AUXG01000150.1 | 100% | pos 21959 (R-) | |||
| ABC11-48288600A10 | FO181539.6 | 100% | pos 3966 (F-) | |||
| AUXG01000150.1 | 100% | pos 26987 (F-) | ||||
| ABC11-48377100A2 | FO181539.6 | 99.87% | pos 3720 (F-) | |||
| AUXG01000150.1 | 99.87% | pos 26741 (F-) | ||||
| ABC11-48431900J9 | FO181539.6 | 99.87% | pos 3716 (F-) | |||
| AUXG01000150.1 | 99.87% | pos 26737 (F-) | ||||
| ABC11-49300200J23 | AUXG01000150.1 | 99.15% | pos 283 (F-) | |||
| ABC11-49381800K15 | AUXG01000150.1 | 100% | pos 22189 (R-) | |||
| ABC11-49386800P6 | AUXG01000150.1 | 99.87% | pos 21896 (R-) | |||
| ABC12-46336200J22 | AUXG01000150.1 | 99.53% | pos 53879 (R+) | |||
| ABC12-46339800A2 | AUXG01000150.1 | 100% | pos 42531 (R+) | |||
| ABC12-46455300H21 | AUXG01000150.1 | 99.78% | pos 14817 (F-) | |||
| ABC12-46906400H3 | AUXG01000150.1 | 99.62% | pos 29941 (F+) | |||
| ABC12-47963200D1 | AUXG01000150.1 | 99.86% | pos 35991 (R+) | |||
| ABC12-49055600O16 | FO181539.6 | 100% | pos 4999 (F-) | |||
| ABC12-49134200K23 | AUXG01000150.1 | 98.37% | pos 50693 (R+) | |||
| ABC12-7921149L4 | AUXG01000150.1 | 99.87% | pos 49673 (F+) | |||
| ABC13-47474200H20 | AUXG01000150.1 | 99.86% | pos 55277 (R+) | |||
| ABC13-47546800N8 | AUXG01000150.1 | 100% | pos 6414 (R-) | |||
| ABC13-47547900O12 | AUXG01000150.1 | 99.75% | pos 48876 (F+) | |||
| ABC13-48054300H8 | AUXG01000150.1 | 99.87% | pos 51939 (R+) | |||
| ABC13-48839200K23 | AUXG01000150.1 | 99.87% | pos 8947 (F-) | |||
| ABC13-49749500E3 | AUXG01000150.1 | 99.56% | pos 5257 (F-) | |||
| ABC14-1080622M18 | AUXG01000150.1 | 100% | pos 37989 (R+) | |||
| ABC14-50107300L8 | AUXG01000150.1 | 100% | pos 6833 (R-) | |||
| ABC14-50129900K15 | AUXG01000150.1 | 100% | pos 40124 (F+) | |||
| ABC14-50203800E8 | FO181539.6 | 100% | pos 5120 (F-) | |||
| ABC7-40278200E15 | AUXG01000150.1 | 100% | pos 6699 (F-) | |||
| ABC7-42493100A7 | AUXG01000150.1 | 100% | pos 46407 (F+) | |||
| ABC7-5788549K7 | AUXG01000150.1 | 100% | pos 49535 (F+) | |||
| ABC7-614222K14 | AUXG01000150.1 | 100% | pos 22324 (F-) | |||
| ABC8-2680240I8 | AUXG01000150.1 | 100% | pos 41408 (R+) | |||
| ABC8-40298100B1 | AUXG01000150.1 | 100% | pos 51611 (R-) | |||
| ABC8-41065500M11 | FO181539.6 | 98.61% | pos 3326 (F-) | |||
| ABC8-41089100C21 | AUXG01000150.1 | 100% | pos 51520 (R+) | |||
| ABC8-41103200E17 | AUXG01000150.1 | 99.87% | pos 54427 (R+) | |||
| ABC8-41118700C19 | FO181539.6 | 100% | pos 3244 (R-) | |||
| ABC8-41164700F22 | AUXG01000150.1 | 100% | pos 22301 (F-) | |||
| ABC8-41793400F3 | AUXG01000150.1 | 100% | pos 32860 (R+) | |||
| ABC8-42228300K2 | AUXG01000150.1 | 100% | pos 54123 (F+) | |||
| ABC8-43011100O1 | AUXG01000150.1 | 100% | pos 51466 (F+) | |||
| ABC8-43035600L15 | FO181539.6 | 100% | pos 1822 (F-) | |||
| ABC8-706022J7 | FO181539.6 | 99.06% | pos 2140 (R-) | |||
| AUXG01000150.1 | 99.06% | pos 25163 (R-) | ||||
| ABC8-785722I13 | AUXG01000150.1 | 99.16% | pos 55369 (F+) | |||
| ABC9-43972400A4 | FO181539.6 | 99.37% | pos 2313 (R-) | |||
| AUXG01000150.1 | 99.37% | pos 25336 (R-) | ||||
| ABC9-44017000C23 | FO181539.6 | 99.78% | pos 5094 (F-) | |||
| ABC9-44019900P23 | AUXG01000150.1 | 100% | pos 1251 (F-) | |||
| ABC9-44023700G7 | AUXG01000150.1 | 99.84% | pos 4105 (R-) | |||
| ABC9-46182300P8 | AUXG01000150.1 | 100% | pos 11676 (R-) | |||
| ABC9-46213800C24 | FO181539.6 | 98.53% | pos 2420 (R-) | |||
| AUXG01000150.1 | 98.53% | pos 25443 (R-) | ||||
| ABC9-46213800O14 | FO181539.6 | 99.86% | pos 2253 (R-) | |||
| AUXG01000150.1 | 99.86% | pos 25276 (R-) | ||||
| ABC9-46216200D10 | AUXG01000150.1 | 99.86% | pos 32376 (F+) | |||
| ABC9-46272900P20 | AUXG01000150.1 | 100% | pos 1329 (F-) | |||
| WI2-1363M19 | FO181539.6 | 98.67% | pos 620 (R-) | |||
| AUXG01000150.1 | 98.67% | pos 23644 (R-) | ||||
| WI2-2178O12 | AUXG01000150.1 | 99.83% | pos 51007 (R+) | |||
| WI2-2418P04 | FO181539.6 | 99.61% | pos 189 (R-) | |||
| AUXG01000150.1 | 99.61% | pos 23213 (R-) | ||||
| WI2-2549C08 | AUXG01000150.1 | 99.84% | pos 11842 (R-) | |||
| WI2-2739M17 | AUXG01000150.1 | 99.85% | pos 48851 (R+) | |||
| WI2-2747B04 | AUXG01000150.1 | 99.48% | pos 43693 (F+) | |||
| WI2-3041N18 | FO181539.6 | 99.31% | pos 1407 (R-) | |||
Repeats
| acc | start | stop | repeat id | strand | name | family | class |
|---|---|---|---|---|---|---|---|
| FO181539.6 | 32 | 366 | 10721722 | - | THE1B | ERVL-MaLR | LTR |
| FO181539.6 | 779 | 1007 | 10721723 | - | MIRb | MIR | SINE |
| FO181539.6 | 1383 | 1486 | 10721724 | - | MIRb | MIR | SINE |
| FO181539.6 | 1565 | 1867 | 10721725 | - | AluSx | Alu | SINE |
| FO181539.6 | 2024 | 2238 | 10721726 | + | MER63A | hAT-Blackjack | DNA |
| FO181539.6 | 2346 | 2475 | 10721727 | - | L2b | L2 | |
| FO181539.6 | 2516 | 2732 | 10721727 | - | L2b | L2 | |
| FO181539.6 | 2767 | 2900 | 10721728 | + | FRAM | Alu | SINE |
| FO181539.6 | 2926 | 3056 | 10721729 | + | AluJb | Alu | SINE |
| FO181539.6 | 3070 | 3360 | 10721730 | + | AluSx | Alu | SINE |
| FO181539.6 | 3419 | 3568 | 10721731 | + | MIR | MIR | SINE |
| FO181539.6 | 3650 | 3710 | 10721732 | - | L2b | L2 | |
| FO181539.6 | 3940 | 4067 | 10721733 | + | L2c | L2 | |
| FO181539.6 | 1 | 36 | 112300045 | N | DUST | ||
| FO181539.6 | 689 | 700 | 112300046 | N | DUST | ||
| FO181539.6 | 1568 | 1587 | 112300047 | N | DUST | ||
| FO181539.6 | 2178 | 2187 | 112300048 | N | DUST | ||
| FO181539.6 | 2729 | 2735 | 112300049 | N | DUST | ||
| FO181539.6 | 3050 | 3058 | 112300050 | N | DUST | ||
| FO181539.6 | 3345 | 3360 | 112300051 | N | DUST | ||
| AUXG01000150.1 | 8508 | 8796 | 10729520 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 8797 | 8941 | 10729519 | + | L2b | L2 | |
| AUXG01000150.1 | 8958 | 9143 | 10729521 | - | MER3 | hAT-Charlie | DNA |
| AUXG01000150.1 | 9484 | 9871 | 10729522 | - | L1MA8 | L1 | |
| AUXG01000150.1 | 10456 | 10491 | 10729523 | - | L2b | L2 | |
| AUXG01000150.1 | 10609 | 10917 | 10729524 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 11704 | 11747 | 10729525 | - | L4_B_Mam | RTE-X | LINE |
| AUXG01000150.1 | 11772 | 11826 | 10729526 | - | L2b | L2 | |
| AUXG01000150.1 | 11865 | 12178 | 10729527 | + | L2c | L2 | |
| AUXG01000150.1 | 12292 | 12550 | 10729528 | + | MIR | MIR | SINE |
| AUXG01000150.1 | 12726 | 12791 | 10729529 | + | (TTTC)n | ||
| AUXG01000150.1 | 13353 | 13439 | 10729530 | + | MIRc | MIR | SINE |
| AUXG01000150.1 | 13460 | 13574 | 10729531 | - | L2b | L2 | |
| AUXG01000150.1 | 13763 | 13975 | 10729532 | + | MIR | MIR | SINE |
| AUXG01000150.1 | 14139 | 14670 | 10729533 | + | MER90 | ERV1 | LTR |
| AUXG01000150.1 | 14789 | 14880 | 10729534 | + | L2b | L2 | |
| AUXG01000150.1 | 14887 | 14935 | 10729535 | + | (GGAA)n | Simple_repeat | |
| AUXG01000150.1 | 14940 | 15066 | 10729526 | - | L2b | L2 | |
| AUXG01000150.1 | 15174 | 15310 | 10729536 | + | MIRc | MIR | SINE |
| AUXG01000150.1 | 15557 | 15702 | 10729537 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 15739 | 16041 | 10729538 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 16080 | 16335 | 10729539 | - | L2a | L2 | |
| AUXG01000150.1 | 16337 | 16771 | 10729540 | - | MLT1C | ERVL-MaLR | LTR |
| AUXG01000150.1 | 16791 | 16832 | 10729537 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 16870 | 17089 | 10729541 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 17531 | 17556 | 10729542 | + | AT_rich | Low_complexity | |
| AUXG01000150.1 | 17611 | 17787 | 10729543 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 17784 | 17923 | 10729544 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 17929 | 18128 | 10729526 | - | L2b | L2 | |
| AUXG01000150.1 | 18256 | 18294 | 10729545 | - | L1ME3G | L1 | |
| AUXG01000150.1 | 18295 | 18606 | 10729546 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 18607 | 18719 | 10729545 | - | L1ME3G | L1 | |
| AUXG01000150.1 | 18737 | 18774 | 10729547 | + | MER104 | TcMar-Tc2 | DNA |
| AUXG01000150.1 | 8238 | 8507 | 10729519 | + | L2b | L2 | |
| AUXG01000150.1 | 7123 | 7292 | 10729518 | + | MER5A | hAT-Charlie | DNA |
| AUXG01000150.1 | 6926 | 7081 | 10729517 | - | MER5B | hAT-Charlie | DNA |
| AUXG01000150.1 | 6726 | 6783 | 10729516 | + | (ATG)n | ||
| AUXG01000150.1 | 6388 | 6513 | 10729515 | + | L2c | L2 | |
| AUXG01000150.1 | 6199 | 6344 | 10729514 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 5717 | 5882 | 10729513 | - | MER20 | hAT-Charlie | DNA |
| AUXG01000150.1 | 5390 | 5594 | 10729511 | + | L2a | L2 | |
| AUXG01000150.1 | 5085 | 5389 | 10729512 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 4821 | 5084 | 10729511 | + | L2a | L2 | |
| AUXG01000150.1 | 4576 | 4767 | 10729510 | + | (CAGAA)n | Simple_repeat | |
| AUXG01000150.1 | 4275 | 4575 | 10729509 | + | AluY | Alu | SINE |
| AUXG01000150.1 | 4248 | 4274 | 10729508 | + | (CAGAA)n | Simple_repeat | |
| AUXG01000150.1 | 4152 | 4224 | 10729508 | + | (CAGAA)n | Simple_repeat | |
| AUXG01000150.1 | 3918 | 4104 | 10729507 | + | MER5B | hAT-Charlie | DNA |
| AUXG01000150.1 | 3376 | 3570 | 10729506 | + | (TGAA)n | Simple_repeat | |
| AUXG01000150.1 | 3319 | 3374 | 10729505 | + | (TGGA)n | Simple_repeat | |
| AUXG01000150.1 | 2718 | 3315 | 10729504 | + | (TGAG)n | Simple_repeat | |
| AUXG01000150.1 | 2604 | 2717 | 10729503 | + | A-rich | ||
| AUXG01000150.1 | 2474 | 2593 | 10729502 | + | L2a | L2 | |
| AUXG01000150.1 | 1822 | 2174 | 10729501 | - | THE1B | ERVL-MaLR | LTR |
| AUXG01000150.1 | 1002 | 1295 | 10729500 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 44 | 341 | 10729499 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 1 | 41 | 10729498 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 18775 | 19077 | 10729548 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 19078 | 19200 | 10729547 | + | MER104 | TcMar-Tc2 | DNA |
| AUXG01000150.1 | 19258 | 19491 | 10729545 | - | L1ME3G | L1 | |
| AUXG01000150.1 | 19558 | 19839 | 10729549 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 20255 | 20382 | 10729550 | + | MIRc | MIR | SINE |
| AUXG01000150.1 | 20425 | 20508 | 10729551 | + | L2b | L2 | |
| AUXG01000150.1 | 20694 | 20976 | 10729552 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 20977 | 21033 | 10729553 | + | G-rich | ||
| AUXG01000150.1 | 21034 | 21269 | 10729554 | + | MIR | MIR | SINE |
| AUXG01000150.1 | 21343 | 21411 | 10729555 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 21436 | 21509 | 10729556 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 21549 | 21845 | 10729557 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 21846 | 21885 | 10729558 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 21913 | 22192 | 10729559 | + | MLT1K | ERVL-MaLR | LTR |
| AUXG01000150.1 | 22286 | 22385 | 10729559 | + | MLT1K | ERVL-MaLR | LTR |
| AUXG01000150.1 | 22686 | 22725 | 10729560 | - | THE1B | ERVL-MaLR | LTR |
| AUXG01000150.1 | 22726 | 23036 | 10729561 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 23037 | 23390 | 10729560 | - | THE1B | ERVL-MaLR | LTR |
| AUXG01000150.1 | 23802 | 24030 | 10729562 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 24406 | 24569 | 10729556 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 24588 | 24890 | 10729563 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 25047 | 25261 | 10729564 | + | MER63A | hAT-Blackjack | DNA |
| AUXG01000150.1 | 25369 | 25498 | 10729565 | - | L2b | L2 | |
| AUXG01000150.1 | 25539 | 25755 | 10729565 | - | L2b | L2 | |
| AUXG01000150.1 | 25796 | 25923 | 10729566 | + | FRAM | Alu | SINE |
| AUXG01000150.1 | 25949 | 26052 | 10729567 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 26093 | 26381 | 10729568 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 26440 | 26589 | 10729569 | + | MIR | MIR | SINE |
| AUXG01000150.1 | 26671 | 26731 | 10729570 | - | L2b | L2 | |
| AUXG01000150.1 | 26961 | 27088 | 10729571 | + | L2c | L2 | |
| AUXG01000150.1 | 28908 | 29262 | 10729572 | + | (CACCAT)n | Simple_repeat | |
| AUXG01000150.1 | 29277 | 29380 | 10729573 | + | (CAT)n | Simple_repeat | |
| AUXG01000150.1 | 29381 | 29560 | 10729574 | + | (CCA)n | ||
| AUXG01000150.1 | 29561 | 29636 | 10729575 | + | (CAT)n | Simple_repeat | |
| AUXG01000150.1 | 29643 | 29820 | 10729576 | + | (CACCAT)n | Simple_repeat | |
| AUXG01000150.1 | 29901 | 30020 | 10729577 | - | L2a | L2 | |
| AUXG01000150.1 | 30021 | 30204 | 10729578 | - | Charlie17a | hAT-Charlie | DNA |
| AUXG01000150.1 | 30282 | 30376 | 10729577 | - | L2a | L2 | |
| AUXG01000150.1 | 30407 | 30822 | 10729577 | - | L2a | L2 | |
| AUXG01000150.1 | 31201 | 31498 | 10729579 | - | MLT1K | ERVL-MaLR | LTR |
| AUXG01000150.1 | 31518 | 31954 | 10729580 | + | L1PREC2 | L1 | |
| AUXG01000150.1 | 31997 | 32141 | 10729581 | - | MER53 | hAT | DNA |
| AUXG01000150.1 | 32246 | 32297 | 10729582 | + | MIR3 | MIR | SINE |
| AUXG01000150.1 | 32687 | 32848 | 10729583 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 32930 | 33231 | 10729584 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 33365 | 33540 | 10729585 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 33664 | 33965 | 10729586 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 33998 | 34131 | 10729587 | - | MIR | MIR | SINE |
| AUXG01000150.1 | 34153 | 34420 | 10729588 | + | L2a | L2 | |
| AUXG01000150.1 | 34436 | 34985 | 10729589 | + | MLT1G1 | ERVL-MaLR | LTR |
| AUXG01000150.1 | 35009 | 35130 | 10729588 | + | L2a | L2 | |
| AUXG01000150.1 | 35172 | 35275 | 10729590 | - | LTR16B | ERVL | LTR |
| AUXG01000150.1 | 35270 | 35506 | 10729591 | + | LTR16C | ERVL | LTR |
| AUXG01000150.1 | 35507 | 35804 | 10729592 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 35805 | 35861 | 10729591 | + | LTR16C | ERVL | LTR |
| AUXG01000150.1 | 36065 | 36234 | 10729593 | + | MLT1J | ERVL-MaLR | LTR |
| AUXG01000150.1 | 36346 | 36466 | 10729593 | + | MLT1J | ERVL-MaLR | LTR |
| AUXG01000150.1 | 36467 | 36566 | 10729588 | + | L2a | L2 | |
| AUXG01000150.1 | 37046 | 37213 | 10729594 | + | MIR3 | MIR | SINE |
| AUXG01000150.1 | 37239 | 37440 | 10729595 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 37518 | 37815 | 10729596 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 37862 | 38046 | 10729597 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 38050 | 38282 | 10729598 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 38469 | 38547 | 10729599 | - | MIR | MIR | SINE |
| AUXG01000150.1 | 39001 | 39102 | 10729600 | - | MIR3 | MIR | SINE |
| AUXG01000150.1 | 39199 | 39278 | 10729601 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 39436 | 39573 | 10729602 | - | L2c | L2 | |
| AUXG01000150.1 | 39746 | 39765 | 10729603 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 39766 | 40243 | 10729604 | - | MLT1D | ERVL-MaLR | LTR |
| AUXG01000150.1 | 40244 | 40402 | 10729603 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 40797 | 41109 | 10729605 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 41110 | 41147 | 10729606 | + | (TTG)n | ||
| AUXG01000150.1 | 41157 | 41441 | 10729607 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 41466 | 41766 | 10729608 | - | L1PB4 | L1 | |
| AUXG01000150.1 | 41780 | 41848 | 10729609 | + | FLAM_C | Alu | SINE |
| AUXG01000150.1 | 41861 | 42031 | 10729610 | - | L1MC1 | L1 | |
| AUXG01000150.1 | 42267 | 42360 | 10729611 | - | L1ME4a | L1 | |
| AUXG01000150.1 | 42366 | 42520 | 10729612 | - | MIR | MIR | SINE |
| AUXG01000150.1 | 42671 | 42825 | 10729613 | - | L1ME4b | L1 | |
| AUXG01000150.1 | 42826 | 42874 | 10729614 | + | (TG)n | ||
| AUXG01000150.1 | 42875 | 42997 | 10729613 | - | L1ME4b | L1 | |
| AUXG01000150.1 | 43000 | 43123 | 10729615 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 43190 | 43394 | 10729616 | + | L1M5 | L1 | |
| AUXG01000150.1 | 43399 | 43938 | 10729617 | + | MLT1F2 | ERVL-MaLR | LTR |
| AUXG01000150.1 | 43939 | 44098 | 10729616 | + | L1M5 | L1 | |
| AUXG01000150.1 | 44121 | 44262 | 10729618 | - | MIR | MIR | SINE |
| AUXG01000150.1 | 44268 | 44333 | 10729619 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 44349 | 44650 | 10729620 | - | MLT1K | ERVL-MaLR | LTR |
| AUXG01000150.1 | 44676 | 44792 | 10729621 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 44901 | 45207 | 10729622 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 45248 | 45437 | 10729623 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 45912 | 46051 | 10729624 | - | L2c | L2 | |
| AUXG01000150.1 | 46055 | 46161 | 10729625 | + | MLT1K | ERVL-MaLR | LTR |
| AUXG01000150.1 | 46706 | 46748 | 10729626 | - | L2b | L2 | |
| AUXG01000150.1 | 46811 | 47057 | 10729627 | - | MLT1F | ERVL-MaLR | LTR |
| AUXG01000150.1 | 47130 | 47313 | 10729628 | + | MLT1G1 | ERVL-MaLR | LTR |
| AUXG01000150.1 | 47314 | 47641 | 10729629 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 47642 | 47679 | 10729628 | + | MLT1G1 | ERVL-MaLR | LTR |
| AUXG01000150.1 | 47685 | 47905 | 10729630 | + | LTR16A2 | ERVL | LTR |
| AUXG01000150.1 | 47938 | 48266 | 10729631 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 48281 | 48653 | 10729632 | + | MLT1C | ERVL-MaLR | LTR |
| AUXG01000150.1 | 48654 | 48965 | 10729633 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 48966 | 49031 | 10729632 | + | MLT1C | ERVL-MaLR | LTR |
| AUXG01000150.1 | 49032 | 49248 | 10729630 | + | LTR16A2 | ERVL | LTR |
| AUXG01000150.1 | 49251 | 49298 | 10729634 | - | MIR | MIR | SINE |
| AUXG01000150.1 | 49340 | 49485 | 10729635 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 49893 | 50018 | 10729636 | - | MIRb | MIR | SINE |
| AUXG01000150.1 | 50613 | 50717 | 10729637 | + | L1ME3B | L1 | |
| AUXG01000150.1 | 50740 | 50920 | 10729638 | + | (TA)n | Simple_repeat | |
| AUXG01000150.1 | 50921 | 51205 | 10729639 | - | AluSx | Alu | SINE |
| AUXG01000150.1 | 51220 | 51565 | 10729637 | + | L1ME3B | L1 | |
| AUXG01000150.1 | 51584 | 51895 | 10729640 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 51896 | 52634 | 10729641 | + | L1MC1 | L1 | |
| AUXG01000150.1 | 52635 | 52988 | 10729642 | + | THE1B | ERVL-MaLR | LTR |
| AUXG01000150.1 | 52989 | 53179 | 10729641 | + | L1MC1 | L1 | |
| AUXG01000150.1 | 53239 | 53334 | 10729643 | + | MIRb | MIR | SINE |
| AUXG01000150.1 | 53441 | 53670 | 10729644 | + | AluJb | Alu | SINE |
| AUXG01000150.1 | 53683 | 53714 | 10729645 | + | (CAAA)n | Simple_repeat | |
| AUXG01000150.1 | 53745 | 54042 | 10729646 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 54052 | 54086 | 10729647 | + | AT_rich | Low_complexity | |
| AUXG01000150.1 | 54579 | 54710 | 10729648 | - | L2a | L2 | |
| AUXG01000150.1 | 54711 | 55008 | 10729649 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 55009 | 55053 | 10729648 | - | L2a | L2 | |
| AUXG01000150.1 | 55054 | 55186 | 10729650 | + | FLAM_C | Alu | SINE |
| AUXG01000150.1 | 55187 | 55306 | 10729648 | - | L2a | L2 | |
| AUXG01000150.1 | 55307 | 55615 | 10729651 | + | AluSx | Alu | SINE |
| AUXG01000150.1 | 55616 | 55720 | 10729648 | - | L2a | L2 | |
| AUXG01000150.1 | 55759 | 56102 | 10729652 | - | MLT1C | ERVL-MaLR | LTR |
| AUXG01000150.1 | 56099 | 56150 | 10729653 | - | AluJb | Alu | SINE |
| AUXG01000150.1 | 44 | 60 | 112304690 | N | DUST | ||
| AUXG01000150.1 | 412 | 418 | 112304691 | N | DUST | ||
| AUXG01000150.1 | 1158 | 1177 | 112304692 | N | DUST | ||
| AUXG01000150.1 | 2581 | 3309 | 112304693 | N | DUST | ||
| AUXG01000150.1 | 3319 | 3421 | 112304694 | N | DUST | ||
| AUXG01000150.1 | 4563 | 4767 | 112304695 | N | DUST | ||
| AUXG01000150.1 | 5085 | 5099 | 112304696 | N | DUST | ||
| AUXG01000150.1 | 5248 | 5261 | 112304697 | N | DUST | ||
| AUXG01000150.1 | 6458 | 6464 | 112304698 | N | DUST | ||
| AUXG01000150.1 | 6582 | 6650 | 112304699 | N | DUST | ||
| AUXG01000150.1 | 6726 | 6783 | 112304700 | N | DUST | ||
| AUXG01000150.1 | 8219 | 8264 | 112304701 | N | DUST | ||
| AUXG01000150.1 | 8508 | 8516 | 112304702 | N | DUST | ||
| AUXG01000150.1 | 9256 | 9263 | 112304703 | N | DUST | ||
| AUXG01000150.1 | 24591 | 24610 | 112304728 | N | DUST | ||
| AUXG01000150.1 | 25201 | 25210 | 112304729 | N | DUST | ||
| AUXG01000150.1 | 25752 | 25758 | 112304730 | N | DUST | ||
| AUXG01000150.1 | 26073 | 26081 | 112304731 | N | DUST | ||
| AUXG01000150.1 | 26368 | 26381 | 112304732 | N | DUST | ||
| AUXG01000150.1 | 28908 | 29862 | 112304733 | N | DUST | ||
| AUXG01000150.1 | 30610 | 30616 | 112304734 | N | DUST | ||
| AUXG01000150.1 | 31823 | 31831 | 112304735 | N | DUST | ||
| AUXG01000150.1 | 32419 | 32427 | 112304736 | N | DUST | ||
| AUXG01000150.1 | 33050 | 33069 | 112304737 | N | DUST | ||
| AUXG01000150.1 | 33218 | 33248 | 112304738 | N | DUST | ||
| AUXG01000150.1 | 33335 | 33341 | 112304739 | N | DUST | ||
| AUXG01000150.1 | 33793 | 33805 | 112304740 | N | DUST | ||
| AUXG01000150.1 | 33952 | 33965 | 112304741 | N | DUST | ||
| AUXG01000150.1 | 35785 | 35804 | 112304742 | N | DUST | ||
| AUXG01000150.1 | 40796 | 40830 | 112304743 | N | DUST | ||
| AUXG01000150.1 | 41110 | 41165 | 112304744 | N | DUST | ||
| AUXG01000150.1 | 41314 | 41325 | 112304745 | N | DUST | ||
| AUXG01000150.1 | 41454 | 41472 | 112304746 | N | DUST | ||
| AUXG01000150.1 | 41860 | 41866 | 112304747 | N | DUST | ||
| AUXG01000150.1 | 42826 | 42863 | 112304748 | N | DUST | ||
| AUXG01000150.1 | 43385 | 43396 | 112304749 | N | DUST | ||
| AUXG01000150.1 | 44042 | 44050 | 112304750 | N | DUST | ||
| AUXG01000150.1 | 44766 | 44772 | 112304751 | N | DUST | ||
| AUXG01000150.1 | 45462 | 45530 | 112304752 | N | DUST | ||
| AUXG01000150.1 | 47314 | 47360 | 112304753 | N | DUST | ||
| AUXG01000150.1 | 47918 | 47924 | 112304754 | N | DUST | ||
| AUXG01000150.1 | 48052 | 48066 | 112304755 | N | DUST | ||
| AUXG01000150.1 | 48218 | 48270 | 112304756 | N | DUST | ||
| AUXG01000150.1 | 48639 | 48683 | 112304757 | N | DUST | ||
| AUXG01000150.1 | 50740 | 50930 | 112304758 | N | DUST | ||
| AUXG01000150.1 | 51872 | 51887 | 112304759 | N | DUST | ||
| AUXG01000150.1 | 53169 | 53238 | 112304760 | N | DUST | ||
| AUXG01000150.1 | 23713 | 23723 | 112304727 | N | DUST | ||
| AUXG01000150.1 | 23008 | 23060 | 112304726 | N | DUST | ||
| AUXG01000150.1 | 22318 | 22324 | 112304725 | N | DUST | ||
| AUXG01000150.1 | 22204 | 22256 | 112304724 | N | DUST | ||
| AUXG01000150.1 | 21834 | 21845 | 112304723 | N | DUST | ||
| AUXG01000150.1 | 20977 | 21074 | 112304722 | N | DUST | ||
| AUXG01000150.1 | 20379 | 20388 | 112304721 | N | DUST | ||
| AUXG01000150.1 | 19545 | 19556 | 112304720 | N | DUST | ||
| AUXG01000150.1 | 18775 | 18795 | 112304719 | N | DUST | ||
| AUXG01000150.1 | 18583 | 18606 | 112304718 | N | DUST | ||
| AUXG01000150.1 | 17542 | 17556 | 112304717 | N | DUST | ||
| AUXG01000150.1 | 17066 | 17089 | 112304716 | N | DUST | ||
| AUXG01000150.1 | 16307 | 16313 | 112304715 | N | DUST | ||
| AUXG01000150.1 | 15925 | 15932 | 112304714 | N | DUST | ||
| AUXG01000150.1 | 15719 | 15767 | 112304713 | N | DUST | ||
| AUXG01000150.1 | 14887 | 14935 | 112304712 | N | DUST | ||
| AUXG01000150.1 | 13112 | 13118 | 112304711 | N | DUST | ||
| AUXG01000150.1 | 12726 | 12793 | 112304710 | N | DUST | ||
| AUXG01000150.1 | 12261 | 12267 | 112304709 | N | DUST | ||
| AUXG01000150.1 | 11757 | 11766 | 112304708 | N | DUST | ||
| AUXG01000150.1 | 10785 | 10797 | 112304707 | N | DUST | ||
| AUXG01000150.1 | 10609 | 10636 | 112304706 | N | DUST | ||
| AUXG01000150.1 | 9759 | 9784 | 112304705 | N | DUST | ||
| AUXG01000150.1 | 9299 | 9312 | 112304704 | N | DUST | ||
| AUXG01000150.1 | 53428 | 53434 | 112304761 | N | DUST | ||
| AUXG01000150.1 | 53681 | 53714 | 112304762 | N | DUST | ||
| AUXG01000150.1 | 53745 | 53763 | 112304763 | N | DUST | ||
| AUXG01000150.1 | 53911 | 53923 | 112304764 | N | DUST | ||
| AUXG01000150.1 | 54054 | 54106 | 112304765 | N | DUST | ||
| AUXG01000150.1 | 55176 | 55208 | 112304766 | N | DUST | ||
| AUXG01000150.1 | 55587 | 55625 | 112304767 | N | DUST | ||
| AUXG01000150.1 | 56108 | 56116 | 112304768 | N | DUST |