Alignment last updated: 07/09/2010 12:15:40

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for CU468236.5 and BX248320.3

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CU468236.5 Zebrafish DNA sequence from clone CH73-62B13 in linkage group 18, complete sequence [htgs_phase3]

Length: 83,479 bp

BX248320.3 Zebrafish DNA sequence from clone CH211-146A1 in linkage group 18, complete sequence [htgs_phase3]

Length: 54,960 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 86027
Total Length: 2000
Aligned Length: 2000
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	1	52960	-	-	chenhc	Taxid 7955 chrom 18 Primary assembly	2010-07-09 12:15:40.080	84521	86027	GRCz11, GRCz10

Alignment 1 of 1

 CU468236.5 : - : 2000..1
 BX248320.3 : - : 54960..52961
 Mismatches = 0, Gaps = 0, Length = 2000
 Percent identity = 100%
 Score = 3965 bits (2000), Expect = 0
  3 BAC and 6 Fosmid bridging clones.
  3 BAC and 6 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

CU468236.5 <2000    gaattcaaacatactactcagccgttaaaaaagtccattctatacagtatgaatatgaaa 1941   
BX248320.3 <54960   ............................................................ 54901  

CU468236.5 <1940    agtatgaatggaatttggacatactacatctgccattttgtcatggtcatgtgaactacc 1881   
BX248320.3 <54900   ............................................................ 54841  

CU468236.5 <1880    tgtgttagttgcgtcgcttcacttccaatgatgaactctgtcgcgaagcatcatgggata 1821   
BX248320.3 <54840   ............................................................ 54781  

CU468236.5 <1820    gcacagcgtgcatggaatgcgcacttcagaatctcgctgggagcagtaagtcatccaggt 1761   
BX248320.3 <54780   ............................................................ 54721  

CU468236.5 <1760    actttttgcatactgattttcgaattctatgaattcggacatactactcggcttgcatac 1701   
BX248320.3 <54720   ............................................................ 54661  

CU468236.5 <1700    tgattttagcatactatatagtatggaagtatgcagtttcggacgcagcacatgactttt 1641   
BX248320.3 <54660   ............................................................ 54601  

CU468236.5 <1640    ctttcaccaaacatgactgatttctgtgagaatcttgggtctatcctggtatatcttcta 1581   
BX248320.3 <54600   ............................................................ 54541  

CU468236.5 <1580    aattataaatatttaaataaggcactatctttataaataaactgaatggatgcaaactaa 1521   
BX248320.3 <54540   ............................................................ 54481  

CU468236.5 <1520    acaactacattctcgactaaaaaagcatcaaaagtacattatgttgtccaacagctgcaa 1461   
BX248320.3 <54480   ............................................................ 54421  

CU468236.5 <1460    tatttgtcaaactgcagtgaatgtaatgatctgctgtcactctatgtgggcgtaataata 1401   
BX248320.3 <54420   ............................................................ 54361  

CU468236.5 <1400    ctcaagactgtacgagtgctgttattgcagaatatcacacagctatcagattcaagaacc 1341   
BX248320.3 <54360   ............................................................ 54301  

CU468236.5 <1340    agacagatctgttgttttaaatgcaattgtgtgttttgtgttagtatattctttatttaa 1281   
BX248320.3 <54300   ............................................................ 54241  

CU468236.5 <1280    ttctttatattaaataagctacctttaagcttcctgtaaaaataaaaaaaaataaaaaat 1221   
BX248320.3 <54240   ............................................................ 54181  

CU468236.5 <1220    tgattggccacttgaaacagtcacatgagatcccaattatccctgctccccctactgtta 1161   
BX248320.3 <54180   ............................................................ 54121  

CU468236.5 <1160    attagaactttaaatcttgtctggttaaatatgaagagacttcctatcattttaatgatt 1101   
BX248320.3 <54120   ............................................................ 54061  

CU468236.5 <1100    gcagttggcgaatggtctcatcaagtgtaatgaatggctgtgttcagtcaggagtctgtc 1041   
BX248320.3 <54060   ............................................................ 54001  

CU468236.5 <1040    attcatgtgtcagtctctctctgtctttctctcgtcctctgcttcaggagggtcctgctg 981    
BX248320.3 <54000   ............................................................ 53941  

CU468236.5 <980     gtcttcccaattaaacaggagaactgcacggtcacccgccgctcacaacactcgctgact 921    
BX248320.3 <53940   ............................................................ 53881  

CU468236.5 <920     tatcctggtttacactgccacacggatgggggaaggaaaaacagtggagagaaatatttt 861    
BX248320.3 <53880   ............................................................ 53821  

CU468236.5 <860     acatcggctcttatttaaagtaaagtagccttctgtgagccactgcaccacatcgaggaa 801    
BX248320.3 <53820   ............................................................ 53761  

CU468236.5 <800     gggaagatttacttctgaatgtgtgagtaaacattagggctgtgtgatattggaaaatct 741    
BX248320.3 <53760   ............................................................ 53701  

CU468236.5 <740     agcattgggatgttttgttactgtgcgatatatatagtgatatgcatacaattactccag 681    
BX248320.3 <53700   ............................................................ 53641  

CU468236.5 <680     attggcttgaatatctctattttggaaagaattctcattttagatcgattgggatgatgt 621    
BX248320.3 <53640   ............................................................ 53581  

CU468236.5 <620     tgtaggggaatgcatctgcataaaatctaataaataaatgaaagcataaataagtgcagt 561    
BX248320.3 <53580   ............................................................ 53521  

CU468236.5 <560     aaagaaaagtttttgtcattttccgagtcttgttattgattctagttgtaagggcaacaa 501    
BX248320.3 <53520   ............................................................ 53461  

CU468236.5 <500     ataatatcttgacttctggttgatcatttggaaaagtggcagaaggtcgatttttctgat 441    
BX248320.3 <53460   ............................................................ 53401  

CU468236.5 <440     gaatcatctgttgagctgcatcccaatcatcccgaatattgcagaagacctattggaacc 381    
BX248320.3 <53400   ............................................................ 53341  

CU468236.5 <380     tgcatggacccaagtgtcttagaaatcagtcaagtttggtaaagaaaaagtcatggtttg 321    
BX248320.3 <53340   ............................................................ 53281  

CU468236.5 <320     gggttacatttggtatgggtgtgcgagagatctgcagagaggatggtaacatcaacagcc 261    
BX248320.3 <53280   ............................................................ 53221  

CU468236.5 <260     tgaggtatcgagacatttgtgctgcccattacagtacaaaccacaagagagggccaattc 201    
BX248320.3 <53220   ............................................................ 53161  

CU468236.5 <200     tctagcaggaaagcactcctcatacttcagcctccacattaaagttcctgaaagccaaga 141    
BX248320.3 <53160   ............................................................ 53101  

CU468236.5 <140     aggtcaaggtgctccagaattgtctatcccagttaccagacatgaacattattgagcatg 81     
BX248320.3 <53100   ............................................................ 53041  

CU468236.5 <80      tctggggtaagttgaaggagaaggcattgaagatgaatctaaagaatctcgatgaacact 21     
BX248320.3 <53040   ............................................................ 52981  

CU468236.5 <20      gggagtcctgcaagaacact 1      
BX248320.3 <52980   .................... 52961

Events

Type

Date

Whodid

Comment

205745

InitHasAlign

04/08/2010 03:20:28

boukn

find_overlap 1.33 built Aug  5 2009. Toolkit wrapper  using /netopt/ncbi_tools64/c++.by-date/20090802/GCC401-Release64/lib
Running blast for 83999615 and 167731003
Filtering on 0.985%, slop 10bp, min length 50bp and strands Unknown, Unknown
Found 1 acceptable dovetail alignment(s) by blast  -W 28 -r 1 -q -3 -G 5 -E 2 -e 1e-05 -Z 200 -F 'm L;m'

tpf_solo for chr18

217823

CreateSwitchPt

07/09/2010 12:15:40

chenhc

tpf_m_Builder 1.43 Toolkit wrapper version: built Jun  7 2010 using /netopt/ncbi_tools64/c++.by-date/20100606/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH211-186F7	BX248320.3	100%	pos 19702 (R-)
CH211-189E6				BX248320.3	100%	pos 27624 (F-)
CH211-191H1				BX248320.3	99.87%	pos 19695 (F-)
CH211-193G5				CU468236.5	100%	pos 25471 (F-)
CH211-195G5				CU468236.5	100%	pos 25508 (F-)
CH211-282B21				BX248320.3	100%	pos 19659 (F-)
CH211-7F3	BX248320.3	99.85%	pos 27466 (R-)
CH73-115D4				BX248320.3	100%	pos 27287 (F-)
CH73-130E17				BX248320.3	100%	pos 27372 (F-)
CH73-184J20	CU468236.5	100%	pos 72306 (R-)
CH73-194E22	CU468236.5	100%	pos 44111 (R-)
CH73-211L16				CU468236.5	100%	pos 66412 (F+)
CH73-244F15				CU468236.5	99.62%	pos 35943 (F-)
CH73-281F20	CU468236.5	98.66%	pos 8544 (R-)
CH73-284L17	BX248320.3	100%	pos 22329 (R+)	CU468236.5	100%	pos 76343 (F-)
CH73-291L15	BX248320.3	100%	pos 28242 (R+)
CH73-329B9	CU468236.5	99.87%	pos 56150 (R-)
CH73-351O16	CU468236.5	100%	pos 14748 (R-)
CH73-356D20	BX248320.3	100%	pos 22530 (R+)	CU468236.5	98.61%	pos 76485 (F-)
CH73-356E20	BX248320.3	100%	pos 22377 (R+)	CU468236.5	99.85%	pos 76380 (F-)
CH73-367C6				CU468236.5	99.67%	pos 9064 (F+)
CH73-384E3	CU468236.5	98.69%	pos 8542 (R-)
CH73-49I8	CU468236.5	100%	pos 24819 (R-)
CH73-62B13	BX248320.3	100%	pos 20527 (R+)
CH73-67M12				CU468236.5	100%	pos 73658 (F+)
DKEY-103I16				BX248320.3	100%	pos 1201 (F-)
DKEY-108G8	BX248320.3	100%	pos 3960 (R-)
DKEY-110L13	BX248320.3	100%	pos 8505 (R-)
DKEY-113E2	CU468236.5	100%	pos 64023 (R+)
DKEY-122A21	CU468236.5	100%	pos 25552 (R-)
DKEY-155P23				CU468236.5	100%	pos 64115 (F-)
DKEY-175N24	BX248320.3	100%	pos 22802 (R-)
DKEY-177L23				BX248320.3	100%	pos 34936 (F-)
DKEY-180M14	BX248320.3	100%	pos 29241 (R-)
DKEY-206I18	BX248320.3	100%	pos 3959 (R-)
DKEY-217O9	CU468236.5	99.71%	pos 40133 (R-)
DKEY-242C24	CU468236.5	100%	pos 70987 (R-)
DKEY-265I5				CU468236.5	100%	pos 23723 (F-)
DKEY-79P8				BX248320.3	99.59%	pos 29628 (F-)
DKEYP-15F6				BX248320.3	100%	pos 38606 (F-)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH1073-103L4	CU468236.5	100%	pos 44327 (R+)	CU468236.5	100%	pos 80014 (F-)
CH1073-120L7				BX248320.3	100%	pos 29266 (F+)
CH1073-141D3				BX248320.3	100%	pos 28865 (F-)
CH1073-141M2				CU468236.5	100%	pos 49500 (F-)
CH1073-162B22	CU468236.5	100%	pos 46402 (R+)	CU468236.5	100%	pos 79642 (F-)
CH1073-168B8	BX248320.3	100%	pos 30077 (R-)
CH1073-181I5	BX248320.3	100%	pos 8851 (R-)
CH1073-196A23				BX248320.3	100%	pos 32519 (F-)
CH1073-215M11				CU468236.5	100%	pos 55250 (F+)
CH1073-233G8	CU468236.5	100%	pos 42074 (R-)	CU468236.5	99.77%	pos 2703 (F+)
CH1073-253C1	BX248320.3	100%	pos 8545 (R-)
CH1073-297D20	BX248320.3	100%	pos 885 (R-)
CH1073-297D20	BX248320.3	100%	pos 886 (R-)
CH1073-319F15	CU468236.5	100%	pos 63541 (R-)	CU468236.5	100%	pos 32844 (F+)
CH1073-330I5				CU468236.5	100%	pos 77920 (F+)
CH1073-330J5				CU468236.5	100%	pos 77920 (F+)
CH1073-331C17				BX248320.3	100%	pos 27353 (F-)
CH1073-337A6	BX248320.3	100%	pos 11580 (R+)
CH1073-338C12	BX248320.3	100%	pos 11214 (R+)	BX248320.3	100%	pos 44119 (F-)
CH1073-34C4	BX248320.3	100%	pos 17009 (R+)	BX248320.3	100%	pos 48843 (F-)
CH1073-35C4	BX248320.3	100%	pos 16996 (R+)	BX248320.3	100%	pos 48843 (F-)
CH1073-396B17	CU468236.5	100%	pos 74578 (R-)	CU468236.5	100%	pos 43077 (F+)
CH1073-402O10				CU468236.5	100%	pos 55323 (F-)
CH1073-417F12	CU468236.5	100%	pos 61932 (R-)	CU468236.5	100%	pos 26591 (F+)
CH1073-42P15	BX248320.3	99.77%	pos 32262 (R-)	BX248320.3	100%	pos 32428 (F-)
CH1073-437C10	BX248320.3	100%	pos 14533 (R-)
CH1073-444P16	CU468236.5	100%	pos 28842 (R+)	CU468236.5	100%	pos 61657 (F-)
CH1073-45L18	CU468236.5	100%	pos 61962 (R-)	CU468236.5	99.86%	pos 26591 (F+)
CH1073-474L5	CU468236.5	100%	pos 51854 (R+)
CH1073-481L14				CU468236.5	99.67%	pos 22381 (F+)
CH1073-487I18	CU468236.5	100%	pos 78230 (R+)
CH1073-519H13	CU468236.5	100%	pos 78230 (R+)
CH1073-554A2				CU468236.5	100%	pos 51756 (F-)
CH1073-555I23	CU468236.5	100%	pos 44111 (R-)	CU468236.5	99.88%	pos 7791 (F+)
CH1073-560G21	BX248320.3	100%	pos 3205 (R-)
CH1073-579J19	CU468236.5	100%	pos 72553 (R+)
CH1073-57B6	CU468236.5	100%	pos 21094 (R-)	BX248320.3	100%	pos 39998 (F+)
CH1073-596M15	BX248320.3	100%	pos 32348 (R-)	BX248320.3	100%	pos 402 (F+)
CH1073-636E6	CU468236.5	100%	pos 53489 (R-)
CH1073-63P1				CU468236.5	99.54%	pos 72248 (F-)
CH1073-644A1	CU468236.5	100%	pos 2528 (R+)
CH1073-666O22	BX248320.3	100%	pos 9778 (R-)
CH1073-677J12				BX248320.3	100%	pos 13387 (F-)
CH1073-694H6	CU468236.5	100%	pos 79031 (R+)
CH1073-700I15				CU468236.5	100%	pos 65437 (F+)
CH1073-714A10	BX248320.3	100%	pos 29838 (R-)
CH1073-729J1	BX248320.3	100%	pos 6800 (R+)	BX248320.3	99.85%	pos 30331 (F-)
CH1073-730B22				CU468236.5	100%	pos 45661 (F-)
CH1073-759I5	CU468236.5	100%	pos 73483 (R+)
CH1073-766K11	CU468236.5	100%	pos 49527 (R-)
CH1073-798P17	CU468236.5	100%	pos 48128 (R+)
CH1073-79H24	CU468236.5	99.84%	pos 47588 (R+)	CU468236.5	100%	pos 81627 (F-)
CH1073-833F13				CU468236.5	100%	pos 47539 (F-)
CH1073-837H7	CU468236.5	100%	pos 53951 (R+)
CH1073-855N22	BX248320.3	100%	pos 27418 (R-)
CH1073-898N4	CU468236.5	100%	pos 57100 (R+)
CH1073-926I15	CU468236.5	100%	pos 61628 (R-)	CU468236.5	100%	pos 25796 (F+)
ZFOS-1184A12	BX248320.3	100%	pos 38961 (R-)	BX248320.3	100%	pos 1023 (F+)
ZFOS-1213H3	BX248320.3	97.7%	pos 40678 (R+)	CU468236.5	99.43%	pos 26615 (F-)
ZFOS-1221H3	CU468236.5	100%	pos 45119 (R-)	CU468236.5	100%	pos 5896 (F+)
ZFOS-152D2				CU468236.5	100%	pos 46619 (F+)
ZFOS-153E11				BX248320.3	100%	pos 26157 (F-)
ZFOS-1560E9	CU468236.5	100%	pos 37093 (R-)	BX248320.3	100%	pos 50063 (F+)
ZFOS-1715F2	BX248320.3	100%	pos 17969 (R+)	CU468236.5	100%	pos 6717 (F-)
ZFOS-1719A11				CU468236.5	100%	pos 18801 (F-)
ZFOS-172F2				BX248320.3	100%	pos 20071 (F-)
ZFOS-192H12	BX248320.3	100%	pos 39952 (R-)
ZFOS-1977C7	CU468236.5	100%	pos 63095 (R-)
ZFOS-1977D7				CU468236.5	100%	pos 18641 (F+)
ZFOS-2051H1	CU468236.5	100%	pos 61875 (R-)
ZFOS-2081D10	BX248320.3	100%	pos 39531 (R+)	CU468236.5	100%	pos 25145 (F-)
ZFOS-2180H1	BX248320.3	97.86%	pos 52622 (R-)
ZFOS-2196F11	CU468236.5	99.86%	pos 30481 (R+)	CU468236.5	100%	pos 69687 (F-)
ZFOS-2325D11				BX248320.3	100%	pos 26225 (F-)
ZFOS-2420B10				BX248320.3	100%	pos 6336 (F-)
ZFOS-2423E12				BX248320.3	100%	pos 27179 (F-)
ZFOS-2721C2	BX248320.3	100%	pos 23734 (R-)
ZFOS-2727A1	BX248320.3	98.8%	pos 23596 (R-)
ZFOS-2727A2	BX248320.3	98.25%	pos 23533 (R-)
ZFOS-2727A4	BX248320.3	98.25%	pos 23620 (R-)
ZFOS-2727A9	BX248320.3	97.83%	pos 23838 (R-)
ZFOS-2727B1	BX248320.3	98.98%	pos 23687 (R-)
ZFOS-2727B10	BX248320.3	98.39%	pos 23688 (R-)
ZFOS-2727B11	BX248320.3	99.43%	pos 23762 (R-)
ZFOS-2727B12	BX248320.3	100%	pos 23688 (R-)
ZFOS-2727B4	BX248320.3	98.59%	pos 23757 (R-)
ZFOS-2727B8	BX248320.3	99.35%	pos 23525 (R-)
ZFOS-2727B9	BX248320.3	98.01%	pos 23527 (R-)
ZFOS-2727C1	BX248320.3	98.69%	pos 23525 (R-)
ZFOS-2727C10	BX248320.3	100%	pos 23885 (R-)
ZFOS-2727C11	BX248320.3	98.18%	pos 23707 (R-)
ZFOS-2727C12	BX248320.3	99.09%	pos 23762 (R-)
ZFOS-2727C5	BX248320.3	100%	pos 23547 (R-)
ZFOS-2727C7	BX248320.3	97.44%	pos 23736 (R-)
ZFOS-2727C9	BX248320.3	98.11%	pos 23757 (R-)
ZFOS-2727D1	BX248320.3	98.7%	pos 23525 (R-)
ZFOS-2727D11	BX248320.3	98.59%	pos 23735 (R-)
ZFOS-2727D2	BX248320.3	99.28%	pos 23734 (R-)
ZFOS-2727D7	BX248320.3	97.85%	pos 23890 (R-)
ZFOS-2727D8	BX248320.3	98.47%	pos 23842 (R-)
ZFOS-2727D9	BX248320.3	98.48%	pos 23688 (R-)
ZFOS-2727E1	BX248320.3	98.39%	pos 23735 (R-)
ZFOS-2727E10	BX248320.3	98.36%	pos 23620 (R-)
ZFOS-2727E2	BX248320.3	98.82%	pos 23736 (R-)
ZFOS-2727E7	BX248320.3	98.68%	pos 23734 (R-)
ZFOS-2727E8	BX248320.3	98.82%	pos 23689 (R-)
ZFOS-2727F1	BX248320.3	98.47%	pos 23547 (R-)
ZFOS-2727F10	BX248320.3	98.46%	pos 23525 (R-)
ZFOS-2727F11	BX248320.3	97.77%	pos 23693 (R-)
ZFOS-2727F3	BX248320.3	99.15%	pos 23753 (R-)
ZFOS-2727F4	BX248320.3	98.68%	pos 23757 (R-)
ZFOS-2727F6	BX248320.3	98.39%	pos 23758 (R-)
ZFOS-2727F7	BX248320.3	98.94%	pos 23735 (R-)
ZFOS-2727F8	BX248320.3	99.1%	pos 23757 (R-)
ZFOS-2727F9	BX248320.3	99.03%	pos 23707 (R-)
ZFOS-2727G11	BX248320.3	99.28%	pos 23734 (R-)
ZFOS-2727G12	BX248320.3	99.48%	pos 23525 (R-)
ZFOS-2727G2	BX248320.3	98.31%	pos 23620 (R-)
ZFOS-2727G4	BX248320.3	98.08%	pos 23758 (R-)
ZFOS-2727G7	BX248320.3	98.32%	pos 23757 (R-)
ZFOS-2727G9	BX248320.3	97.74%	pos 23735 (R-)
ZFOS-2727H1	BX248320.3	100%	pos 23762 (R-)
ZFOS-2727H10	BX248320.3	99.48%	pos 23497 (R-)
ZFOS-2727H11	BX248320.3	98.21%	pos 23900 (R-)
ZFOS-2727H5	BX248320.3	98.65%	pos 23736 (R-)
ZFOS-2727H6	BX248320.3	99.04%	pos 23600 (R-)
ZFOS-2727H9	BX248320.3	98.64%	pos 23524 (R-)
ZFOS-2872G4	BX248320.3	99.86%	pos 27099 (R-)
ZFOS-322E6				CU468236.5	100%	pos 64411 (F+)
ZFOS-330F7	BX248320.3	100%	pos 26227 (R-)
ZFOS-399E4				BX248320.3	100%	pos 39404 (F-)
ZFOS-573F3				BX248320.3	99.63%	pos 34738 (F-)
ZFOS-735B10	CU468236.5	100%	pos 58136 (R+)
ZFOS-976H6	CU468236.5	100%	pos 3390 (R-)	BX248320.3	100%	pos 18293 (F+)
ZFOS-998E6	CU468236.5	99.76%	pos 73010 (R-)	CU468236.5	100%	pos 38051 (F+)

Repeats

acc	start	stop	repeat id	strand	name	family	class
CU468236.5	6741	6763	6584034	+	AT_rich		Low_complexity
CU468236.5	7809	7934	6584035	-	hAT-N32_DR	hAT-Charlie	DNA
CU468236.5	8116	8418	6584035	-	hAT-N32_DR	hAT-Charlie	DNA
CU468236.5	8542	8645	6584036	+	(TA)n		Simple_repeat
CU468236.5	8646	8876	6584037	+	DNA15TA1_DR	TcMar-Tc1	DNA
CU468236.5	8945	9231	6584038	-	hAT-N52_DR	hAT-Ac	DNA
CU468236.5	9294	9364	6584039	+	(TA)n		Simple_repeat
CU468236.5	9365	10350	6584040	+	EnSpm-N2_DR	CMC-EnSpm	DNA
CU468236.5	10348	10642	6584041	-	Kolobok-N4_DR	Kolobok-T2	DNA
CU468236.5	10637	12543	6584042	+	EnSpm-N2_DR	CMC-EnSpm	DNA
CU468236.5	12512	12767	6584043	+	ANGEL	hAT	DNA
CU468236.5	12779	13140	6584044	+	Gypsy161-LTR_DR	Gypsy	LTR
CU468236.5	13141	13219	6584045	+	EnSpm-N2_DR	CMC-EnSpm	DNA
CU468236.5	13220	13243	6584046	+	(TA)n		Simple_repeat
CU468236.5	13244	14227	6584045	+	EnSpm-N2_DR	CMC-EnSpm	DNA
CU468236.5	14247	14489	6584047	+	DNA-2-20_DR	CMC-EnSpm	DNA
CU468236.5	14506	14738	6584048	+	DNA-X-11_DR		DNA
CU468236.5	14745	14816	6584049	+	(TA)n		Simple_repeat
CU468236.5	15199	15476	6584050	+	ANGEL	hAT	DNA
CU468236.5	16598	16921	6584051	+	hAT-N45_DR	hAT?	DNA
CU468236.5	17070	17555	6584052	-	SINE3-1	5S	SINE
CU468236.5	18321	18577	6584053	-	DNA-8-22_DR	hAT?	DNA
CU468236.5	19908	20095	6584054	-	DNA11TA1_DR	TcMar-Tc1	DNA
CU468236.5	20096	20198	6584055	+	HATN10_DR	hAT	DNA
CU468236.5	20199	20275	6584056	+	HATN10_DR	hAT	DNA
CU468236.5	20239	20280	6584057	-	EnSpm-6N1_DR	CMC-EnSpm	DNA
CU468236.5	20579	20676	6584058	+	DNA-2-8_DR	CMC-EnSpm	DNA
CU468236.5	20604	20691	6584059	-	DNA-2-28_DR	TcMar?	DNA
CU468236.5	21188	21346	6584060	+	HATN10_DR	hAT	DNA
CU468236.5	21751	22052	6584061	+	EnSpm-N8_DR	CMC-EnSpm	DNA
CU468236.5	22046	22128	6584062	+	EnSpm-N8_DR	CMC-EnSpm	DNA
CU468236.5	23343	23523	6584063	-	TDR19	hAT	DNA
CU468236.5	23852	23962	6584064	-	DNA-8-9_DR	hAT-Ac?	DNA
CU468236.5	6519	6719	6584032	-	HE2_DR	V	SINE
CU468236.5	6468	6518	6584033	+	(CA)n		Simple_repeat
CU468236.5	6345	6467	6584032	-	HE2_DR	V	SINE
CU468236.5	6293	6458	6584031	-	Helitron-2_DR	Helitron	RC
CU468236.5	5973	6261	6584030	-	TC1DR3	TcMar-Tc1	DNA
CU468236.5	5230	5959	6584030	-	TC1DR3	TcMar-Tc1	DNA
CU468236.5	4987	5191	6584029	+	Tc1N1_DR	CMC-EnSpm?	DNA
CU468236.5	4736	4778	6584028	+	AT_rich		Low_complexity
CU468236.5	3603	3815	6584027	+	DIRS-1-LTR_DR	DIRS	LTR
CU468236.5	3532	3585	6584027	+	DIRS-1-LTR_DR	DIRS	LTR
CU468236.5	3308	3318	6584024	+	TE-X-5_DR		Satellite
CU468236.5	3245	3355	6584026	-	EnSpm-3_DR	CMC-EnSpm	DNA
CU468236.5	3122	3307	6584025	+	Helitron-2_DR	Helitron	RC
CU468236.5	3108	3121	6584024	+	TE-X-5_DR		Satellite
CU468236.5	2531	2801	6584023	-	HE2_DR	V	SINE
CU468236.5	2521	2600	6584022	+	DNA-8-14_DR	hAT-Charlie	DNA
CU468236.5	2172	2514	6584021	+	DNA-X-4_DR		DNA
CU468236.5	2028	2165	6584020	+	TDR2	TcMar-Tc1	DNA
CU468236.5	1652	2027	6584019	+	HarbingerN6_DR	PIF-Harbinger	DNA
CU468236.5	1591	1650	6584018	+	TDR2	TcMar-Tc1	DNA
CU468236.5	1327	1591	6584017	+	DNA-X-4_DR		DNA
CU468236.5	1220	1244	6584016	+	AT_rich		Low_complexity
CU468236.5	659	766	6584015	-	HATN12_DR	hAT-Ac	DNA
CU468236.5	1	535	6584014	-	TDR2	TcMar-Tc1	DNA
CU468236.5	23977	24076	6584065	-	Helitron-2_DR	Helitron	RC
CU468236.5	24313	24751	6584066	-	DIRS-1-LTR_DR	DIRS	LTR
CU468236.5	26114	26203	6584067	+	TC1DR3	TcMar-Tc1	DNA
CU468236.5	26224	26259	6584068	+	Harbinger-N10_DR	PIF-Harbinger	DNA
CU468236.5	26260	27020	6584069	-	DNA-8-3_DR		DNA
CU468236.5	27021	28887	6584070	-	DNA-8-16_DR	hAT-hobo?	DNA
CU468236.5	28888	29262	6584071	-	DNA-8-3_DR		DNA
CU468236.5	29263	29449	6584072	+	Harbinger-N10_DR	PIF-Harbinger	DNA
CU468236.5	30022	30641	6584073	+	TC1DR3	TcMar-Tc1	DNA
CU468236.5	30697	30937	6584074	-	TC1DR3	TcMar-Tc1	DNA
CU468236.5	31292	31316	6584075	+	(TTCA)n
CU468236.5	31317	31667	6584076	-	HE2_DR	V	SINE
CU468236.5	31683	31862	6584077	+	TDR2	TcMar-Tc1	DNA
CU468236.5	31861	32146	6584078	+	TDR2	TcMar-Tc1	DNA
CU468236.5	32201	32386	6584079	+	ENSPM-6_DR	CMC-EnSpm	DNA
CU468236.5	32893	33126	6584080	+	TDR2	TcMar-Tc1	DNA
CU468236.5	34558	35199	6584081	+	DIRS-N1_DR	Ngaro	LTR
CU468236.5	35542	35723	6584082	-	HATN10_DR	hAT	DNA
CU468236.5	35733	35788	6584083	+	SINE3-1a	5S	SINE
CU468236.5	35814	36395	6584084	-	DNA8-3_DR		DNA
CU468236.5	36396	36768	6584083	+	SINE3-1a	5S	SINE
CU468236.5	36771	36868	6584082	-	HATN10_DR	hAT	DNA
CU468236.5	36958	37150	6584085	+	L2-2_DRe	L2	LINE
CU468236.5	37288	37424	6584082	-	HATN10_DR	hAT	DNA
CU468236.5	37793	38026	6584086	+	DNA-3-5_DR		DNA
CU468236.5	38168	38285	6584087	-	HarbingerN6_DR	PIF-Harbinger	DNA
CU468236.5	38286	38481	6584088	-	HarbingerN6_DR	PIF-Harbinger	DNA
CU468236.5	38490	38511	6584089	+	AT_rich		Low_complexity
CU468236.5	40132	40274	6584090	+	(TAGA)n		Simple_repeat
CU468236.5	40315	40446	6584090	+	(TAGA)n		Simple_repeat
CU468236.5	40484	40503	6584091	+	(TGGA)n		Simple_repeat
CU468236.5	40543	40705	6584092	+	(TAGA)n		Simple_repeat
CU468236.5	41050	41077	6584093	+	AT_rich		Low_complexity
CU468236.5	41289	41709	6584094	-	MuDR-N1_DR	MULE-MuDR	DNA
CU468236.5	41902	42031	6584094	-	MuDR-N1_DR	MULE-MuDR	DNA
CU468236.5	42062	42213	6584094	-	MuDR-N1_DR	MULE-MuDR	DNA
CU468236.5	42542	42568	6584095	+	(CAA)n		Simple_repeat
CU468236.5	45048	45126	6584096	+	TDR3	hAT-Charlie	DNA
CU468236.5	45583	45830	6584097	+	LTR-11_DR		LTR
CU468236.5	45829	45922	6584098	+	LTR-11_DR		LTR
CU468236.5	45932	46035	6584098	+	LTR-11_DR		LTR
CU468236.5	48211	48295	6584099	-	TDR2	TcMar-Tc1	DNA
CU468236.5	48256	49104	6584100	+	TDR2	TcMar-Tc1	DNA
CU468236.5	49494	49858	6584101	-	HE1_DR1	V	SINE
CU468236.5	49798	49865	6584102	-	DNA8-9_DR	hAT	DNA
CU468236.5	49962	50167	6584103	-	DNA-5-2_DR	hAT-Tip100	DNA
CU468236.5	50190	50330	6584104	-	DNA-5-2_DR	hAT-Tip100	DNA
CU468236.5	50572	50758	6584105	-	hAT-N66B_DR	hAT-Charlie	DNA
CU468236.5	51245	51550	6584106	+	DNA-2-30_DR		DNA
CU468236.5	51847	51888	6584107	+	AT_rich		Low_complexity
CU468236.5	52479	52532	6584108	+	A-rich
CU468236.5	53861	54074	6584109	+	DNA-8-24_DR	hAT?	DNA
CU468236.5	54168	54836	6584110	+	EnSpm-N7_DR	CMC-EnSpm	DNA
CU468236.5	54886	55073	6584111	+	DNA-2-9_DR	CMC-EnSpm	DNA
CU468236.5	55093	55423	6584112	-	DNA2-2B_DR		DNA
CU468236.5	55414	55645	6584113	+	HATN8_DR		DNA
CU468236.5	55646	56162	6584112	-	DNA2-2B_DR		DNA
CU468236.5	56228	56336	6584114	+	DNA-2-9_DR	CMC-EnSpm	DNA
CU468236.5	59088	59115	6584115	+	AT_rich		Low_complexity
CU468236.5	59146	59365	6584116	+	DNA-2-7_DR	CMC-EnSpm	DNA
CU468236.5	59343	59465	6584117	+	DNA-2-7_DR	CMC-EnSpm	DNA
CU468236.5	59489	59843	6584118	+	HE2_DR	V	SINE
CU468236.5	59709	59867	6584119	-	DNA-8-14_DR	hAT-Charlie	DNA
CU468236.5	59845	59905	6584120	+	DNA-2-7_DR	CMC-EnSpm	DNA
CU468236.5	60025	60378	6584121	+	HE1_DR1	V	SINE
CU468236.5	60213	60398	6584122	+	Helitron-2_DR	Helitron	RC
CU468236.5	60581	60831	6584123	+	ANGEL	hAT	DNA
CU468236.5	60832	60877	6584124	+	(TTTAA)n
CU468236.5	60970	61188	6584125	+	TE-X-4_DR		Unknown
CU468236.5	61000	61357	6584126	+	HE1_DR1	V	SINE
CU468236.5	62042	62062	6584127	+	AT_rich		Low_complexity
CU468236.5	62069	62390	6584128	-	LTR-8_DR		LTR
CU468236.5	62411	62543	6584128	-	LTR-8_DR		LTR
CU468236.5	62589	63448	6584129	-	DNA-TA-7_DR	TcMar-Fot1	DNA
CU468236.5	63484	63597	6584130	-	TDR12		DNA
CU468236.5	63594	63837	6584131	+	DNA-8-24_DR	hAT?	DNA
CU468236.5	63832	63957	6584130	-	TDR12		DNA
CU468236.5	63995	64148	6584132	+	Helitron-2_DR	Helitron	RC
CU468236.5	64019	64309	6584133	+	ANGEL	hAT	DNA
CU468236.5	64976	65003	6584134	+	(CA)n		Simple_repeat
CU468236.5	65284	65317	6584135	+	(TG)n
CU468236.5	65352	65372	6584136	+	(CA)n		Simple_repeat
CU468236.5	65402	65598	6584137	-	DNA-8-12_DR	hAT?	DNA
CU468236.5	65608	66189	6584138	-	HATN2_DR	hAT	DNA
CU468236.5	66682	66956	6584139	-	HE1_DR1	V	SINE
CU468236.5	67838	68048	6584140	+	TE-X-5_DR		Satellite
CU468236.5	68049	68331	6584141	-	Harbinger-N10_DR	PIF-Harbinger	DNA
CU468236.5	68332	68392	6584142	-	TC1DR3	TcMar-Tc1	DNA
CU468236.5	68393	68553	6584143	-	hAT-N34_DR	hAT?	DNA
CU468236.5	68563	68927	6584144	+	hAT-N44_DR	hAT-Tip100	DNA
CU468236.5	68953	68992	6584145	+	(TG)n
CU468236.5	68994	69051	6584146	+	DNA-8-23_DR	hAT	DNA
CU468236.5	69091	69221	6584147	-	hAT-N34_DR	hAT?	DNA
CU468236.5	69223	69263	6584148	-	TC1DR3	TcMar-Tc1	DNA
CU468236.5	71399	71455	6584149	+	hAT-N54_DR	hAT-Ac	DNA
CU468236.5	71779	72109	6584150	+	EnSpm-N6_DR	CMC-EnSpm?	DNA
CU468236.5	72485	72516	6584151	+	(TCC)n
CU468236.5	72517	72603	6584152	+	(CAT)n		Simple_repeat
CU468236.5	74683	74788	6584153	-	TDR18	TcMar	DNA
CU468236.5	74788	74834	6584154	-	ENSPM-6_DR	CMC-EnSpm	DNA
CU468236.5	74835	74907	6584153	-	TDR18	TcMar	DNA
CU468236.5	74916	75793	6584155	+	LOOPERN4_DR	PiggyBac	DNA
CU468236.5	75803	75945	6584153	-	TDR18	TcMar	DNA
CU468236.5	76031	76098	6584156	+	TE-X-5_DR		Satellite
CU468236.5	76047	76105	6584157	+	DNA-X-3_DR		DNA
CU468236.5	76144	76169	6584158	+	(TTCA)n
CU468236.5	76170	76493	6584159	-	HE1_DR1	V	SINE
CU468236.5	76354	76512	6584160	-	DNA-2-32_DR		DNA
CU468236.5	76531	76558	6584161	+	TE-X-5_DR		Satellite
CU468236.5	76564	76848	6584162	-	HATN3B_DR	hAT	DNA
CU468236.5	76848	77211	6584162	-	HATN3B_DR	hAT	DNA
CU468236.5	77282	77600	6584163	-	hAT-N78_DR	hAT-Charlie	DNA
CU468236.5	78614	78633	6584164	+	(A)n		Simple_repeat
CU468236.5	79191	80110	6584165	-	hAT-N21_DR	hAT-Charlie	DNA
CU468236.5	80121	80273	6584166	+	DNA-X-12_DR		DNA
CU468236.5	80274	80409	6584165	-	hAT-N21_DR	hAT-Charlie	DNA
CU468236.5	81435	81588	6584167	-	HATN10_DR	hAT	DNA
CU468236.5	81649	81676	6584168	+	AT_rich		Low_complexity
CU468236.5	82051	82112	6584169	+	Tc1N1_DR	CMC-EnSpm?	DNA
CU468236.5	82069	82257	6584170	-	TE-X-4_DR		Unknown
CU468236.5	82120	82258	6584171	+	Tc1N1_DR	CMC-EnSpm?	DNA
CU468236.5	82289	83392	6584172	+	TC1DR3	TcMar-Tc1	DNA
CU468236.5	83401	83479	6584173	+	Tc1N1_DR	CMC-EnSpm?	DNA
CU468236.5	1222	1243	12442481	N	DUST
CU468236.5	3429	3435	12442482	N	DUST
CU468236.5	4476	4482	12442483	N	DUST
CU468236.5	4714	4804	12442484	N	DUST
CU468236.5	6286	6302	12442485	N	DUST
CU468236.5	6468	6513	12442486	N	DUST
CU468236.5	7114	7120	12442487	N	DUST
CU468236.5	7296	7302	12442488	N	DUST
CU468236.5	8392	8404	12442489	N	DUST
CU468236.5	8542	8645	12442490	N	DUST
CU468236.5	8828	8836	12442491	N	DUST
CU468236.5	9024	9066	12442492	N	DUST
CU468236.5	9294	9364	12442493	N	DUST
CU468236.5	9642	9648	12442494	N	DUST
CU468236.5	9963	9969	12442495	N	DUST
CU468236.5	10496	10503	12442496	N	DUST
CU468236.5	10785	10795	12442497	N	DUST
CU468236.5	10864	10921	12442498	N	DUST
CU468236.5	10957	11021	12442499	N	DUST
CU468236.5	11822	11882	12442500	N	DUST
CU468236.5	12413	12428	12442501	N	DUST
CU468236.5	12690	12701	12442502	N	DUST
CU468236.5	13141	13152	12442503	N	DUST
CU468236.5	13220	13243	12442504	N	DUST
CU468236.5	13302	13308	12442505	N	DUST
CU468236.5	14310	14319	12442506	N	DUST
CU468236.5	14496	14502	12442507	N	DUST
CU468236.5	14745	14854	12442508	N	DUST
CU468236.5	14977	15038	12442509	N	DUST
CU468236.5	15086	15092	12442510	N	DUST
CU468236.5	15248	15255	12442511	N	DUST
CU468236.5	15382	15388	12442512	N	DUST
CU468236.5	15408	15414	12442513	N	DUST
CU468236.5	16390	16396	12442514	N	DUST
CU468236.5	17577	17590	12442515	N	DUST
CU468236.5	17765	17771	12442516	N	DUST
CU468236.5	18087	18096	12442517	N	DUST
CU468236.5	18397	18462	12442518	N	DUST
CU468236.5	18714	18720	12442519	N	DUST
CU468236.5	18802	18828	12442520	N	DUST
CU468236.5	19556	19562	12442521	N	DUST
CU468236.5	20033	20047	12442522	N	DUST
CU468236.5	20418	20424	12442523	N	DUST
CU468236.5	20469	20475	12442524	N	DUST
CU468236.5	20772	20827	12442525	N	DUST
CU468236.5	21055	21061	12442526	N	DUST
CU468236.5	21094	21106	12442527	N	DUST
CU468236.5	21229	21236	12442528	N	DUST
CU468236.5	21465	21472	12442529	N	DUST
CU468236.5	21653	21660	12442530	N	DUST
CU468236.5	21964	21970	12442531	N	DUST
CU468236.5	23796	23802	12442532	N	DUST
CU468236.5	23995	24002	12442533	N	DUST
CU468236.5	24876	24885	12442534	N	DUST
CU468236.5	26400	26406	12442535	N	DUST
CU468236.5	26486	26493	12442536	N	DUST
CU468236.5	27550	27556	12442537	N	DUST
CU468236.5	27765	27804	12442538	N	DUST
CU468236.5	27928	27934	12442539	N	DUST
CU468236.5	27999	28007	12442540	N	DUST
CU468236.5	30402	30408	12442541	N	DUST
CU468236.5	30510	30517	12442542	N	DUST
CU468236.5	31147	31158	12442543	N	DUST
CU468236.5	31292	31316	12442544	N	DUST
CU468236.5	36874	36884	12442545	N	DUST
CU468236.5	36927	36977	12442546	N	DUST
CU468236.5	37293	37315	12442547	N	DUST
CU468236.5	37641	37647	12442548	N	DUST
CU468236.5	56315	56330	12442573	N	DUST
CU468236.5	57791	57801	12442574	N	DUST
CU468236.5	58849	58855	12442575	N	DUST
CU468236.5	59002	59060	12442576	N	DUST
CU468236.5	59350	59356	12442577	N	DUST
CU468236.5	59461	59485	12442578	N	DUST
CU468236.5	60544	60550	12442579	N	DUST
CU468236.5	60819	60879	12442580	N	DUST
CU468236.5	62048	62054	12442581	N	DUST
CU468236.5	62069	62075	12442582	N	DUST
CU468236.5	62664	62676	12442583	N	DUST
CU468236.5	63031	63130	12442584	N	DUST
CU468236.5	63335	63348	12442585	N	DUST
CU468236.5	64595	64603	12442586	N	DUST
CU468236.5	64976	65003	12442587	N	DUST
CU468236.5	65284	65317	12442588	N	DUST
CU468236.5	65352	65372	12442589	N	DUST
CU468236.5	65614	65626	12442590	N	DUST
CU468236.5	67440	67446	12442591	N	DUST
CU468236.5	68784	68790	12442592	N	DUST
CU468236.5	68897	68910	12442593	N	DUST
CU468236.5	68953	69059	12442594	N	DUST
CU468236.5	69263	69324	12442595	N	DUST
CU468236.5	69927	69934	12442596	N	DUST
CU468236.5	70542	70549	12442597	N	DUST
CU468236.5	70707	70713	12442598	N	DUST
CU468236.5	70857	70924	12442599	N	DUST
CU468236.5	71758	71764	12442600	N	DUST
CU468236.5	71790	71802	12442601	N	DUST
CU468236.5	72190	72208	12442602	N	DUST
CU468236.5	72491	72516	12442603	N	DUST
CU468236.5	74193	74211	12442604	N	DUST
CU468236.5	74798	74810	12442605	N	DUST
CU468236.5	56087	56093	12442572	N	DUST
CU468236.5	55011	55023	12442571	N	DUST
CU468236.5	53906	53913	12442570	N	DUST
CU468236.5	52977	52983	12442569	N	DUST
CU468236.5	52853	52862	12442568	N	DUST
CU468236.5	52750	52756	12442567	N	DUST
CU468236.5	52482	52532	12442566	N	DUST
CU468236.5	50288	50311	12442565	N	DUST
CU468236.5	47979	47996	12442564	N	DUST
CU468236.5	47586	47593	12442563	N	DUST
CU468236.5	45029	45043	12442562	N	DUST
CU468236.5	44908	44916	12442561	N	DUST
CU468236.5	42542	42571	12442560	N	DUST
CU468236.5	42226	42233	12442559	N	DUST
CU468236.5	41495	41535	12442558	N	DUST
CU468236.5	41065	41077	12442557	N	DUST
CU468236.5	40770	40829	12442556	N	DUST
CU468236.5	40542	40706	12442555	N	DUST
CU468236.5	40136	40446	12442554	N	DUST
CU468236.5	39005	39011	12442553	N	DUST
CU468236.5	38657	38672	12442552	N	DUST
CU468236.5	38108	38119	12442551	N	DUST
CU468236.5	37850	37856	12442550	N	DUST
CU468236.5	37832	37838	12442549	N	DUST
CU468236.5	76368	76374	12442606	N	DUST
CU468236.5	76777	76783	12442607	N	DUST
CU468236.5	77047	77101	12442608	N	DUST
CU468236.5	77296	77302	12442609	N	DUST
CU468236.5	77321	77327	12442610	N	DUST
CU468236.5	78614	78633	12442611	N	DUST
CU468236.5	79307	79315	12442612	N	DUST
CU468236.5	79726	79732	12442613	N	DUST
CU468236.5	81339	81352	12442614	N	DUST
CU468236.5	81570	81583	12442615	N	DUST
CU468236.5	81649	81656	12442616	N	DUST
CU468236.5	82057	82168	12442617	N	DUST
CU468236.5	82595	82603	12442618	N	DUST
BX248320.3	5852	5958	6914970	+	(GA)n		Simple_repeat
BX248320.3	5959	5981	6914968	-	EnSpm-N1_DR	CMC-EnSpm	DNA
BX248320.3	5982	6074	6914971	-	DNA-5-3_DR	hAT-hAT5	DNA
BX248320.3	6091	6313	6914972	-	DNA-5-3_DR	hAT-hAT5	DNA
BX248320.3	6466	6505	6914973	+	AT_rich		Low_complexity
BX248320.3	6726	6752	6914974	+	(GA)n		Simple_repeat
BX248320.3	7514	8651	6914975	-	DNAX-10_DR		DNA
BX248320.3	8711	8924	6914976	-	SINE3-1a	5S	SINE
BX248320.3	8960	8983	6914977	+	AT_rich		Low_complexity
BX248320.3	9769	9794	6914978	+	(CTA)n
BX248320.3	9812	9949	6914979	+	DNA-8-9_DR	hAT-Ac?	DNA
BX248320.3	9839	10028	6914980	+	HE1_DR1	V	SINE
BX248320.3	10361	10785	6914981	-	REX1-1_DR	Rex-Babar	LINE
BX248320.3	10904	10926	6914982	+	(TTA)n
BX248320.3	11030	11074	6914983	+	HE1_DR1	V	SINE
BX248320.3	11075	11142	6914984	+	TE-X-5_DR		Satellite
BX248320.3	11143	11161	6914983	+	HE1_DR1	V	SINE
BX248320.3	11982	12081	6914985	-	L2-5_DRe	L2	LINE
BX248320.3	12210	12237	6914986	+	AT_rich		Low_complexity
BX248320.3	12299	12419	6914987	+	(TA)n		Simple_repeat
BX248320.3	13463	13667	6914988	+	HE1_DR1	V	SINE
BX248320.3	13668	13716	6914989	+	(TG)n
BX248320.3	13717	13874	6914988	+	HE1_DR1	V	SINE
BX248320.3	13880	13933	6914990	+	DNA11TA1_DR	TcMar-Tc1	DNA
BX248320.3	13936	14117	6914991	-	Polinton-1N1_DR	Maverick	DNA
BX248320.3	14110	14183	6914992	+	DNA11TA1_DR	TcMar-Tc1	DNA
BX248320.3	14261	14529	6914993	-	Kolobok-1_DR	Kolobok-T2	DNA
BX248320.3	15248	15313	6914994	+	(TA)n		Simple_repeat
BX248320.3	15325	15543	6914995	+	TDR12		DNA
BX248320.3	15691	15849	6914996	-	DNA-TA-7_DR	TcMar-Fot1	DNA
BX248320.3	16020	16180	6914997	-	DNA-5-2_DR	hAT-Tip100	DNA
BX248320.3	16200	16442	6914998	+	DNA-8-24_DR	hAT?	DNA
BX248320.3	16295	16442	6914997	-	DNA-5-2_DR	hAT-Tip100	DNA
BX248320.3	5783	5851	6914969	+	DNA-X-5_DR		DNA
BX248320.3	5772	5782	6914968	-	EnSpm-N1_DR	CMC-EnSpm	DNA
BX248320.3	5759	5771	6914967	+	Helitron-2_DR	Helitron	RC
BX248320.3	5691	5749	6914966	+	HarbingerN3_DR	PIF-Harbinger	DNA
BX248320.3	5554	5575	6914965	+	(A)n		Simple_repeat
BX248320.3	5222	5505	6914964	+	hAT-N69_DR	hAT-Ac	DNA
BX248320.3	5010	5195	6914963	+	hAT-N69_DR	hAT-Ac	DNA
BX248320.3	4368	4958	6914962	+	DNA-4-1_DR		DNA
BX248320.3	3560	3924	6914961	-	HE1_DR1	V	SINE
BX248320.3	3055	3126	6914960	+	AT_rich		Low_complexity
BX248320.3	2972	2999	6914959	+	AT_rich		Low_complexity
BX248320.3	2649	2836	6914957	-	LOOPERN6_DR	PiggyBac	DNA
BX248320.3	2501	2659	6914957	-	LOOPERN6_DR	PiggyBac	DNA
BX248320.3	2421	2497	6914957	-	LOOPERN6_DR	PiggyBac	DNA
BX248320.3	2181	2426	6914958	+	LOOPERN6_DR	PiggyBac	DNA
BX248320.3	2144	2185	6914957	-	LOOPERN6_DR	PiggyBac	DNA
BX248320.3	1469	1600	6914956	-	ANGEL	hAT	DNA
BX248320.3	1379	1462	6914955	+	hAT-N20_DR	hAT	DNA
BX248320.3	1183	1364	6914954	+	TE-2-1_DR		Satellite
BX248320.3	647	1083	6914954	+	TE-2-1_DR		Satellite
BX248320.3	476	880	6914953	+	hAT-N20_DR	hAT	DNA
BX248320.3	341	478	6914952	+	hAT-N20_DR	hAT	DNA
BX248320.3	188	227	6914951	+	AT_rich		Low_complexity
BX248320.3	64	86	6914950	+	(CAAA)n		Simple_repeat
BX248320.3	16484	16625	6914999	-	DNA-5-2_DR	hAT-Tip100	DNA
BX248320.3	16670	16691	6915000	+	(TAAAA)n		Simple_repeat
BX248320.3	16835	16992	6915001	-	Polinton-1N1_DR	Maverick	DNA
BX248320.3	16865	17002	6915002	-	DNA-8-14_DR	hAT-Charlie	DNA
BX248320.3	17009	17412	6914999	-	DNA-5-2_DR	hAT-Tip100	DNA
BX248320.3	17416	17444	6915003	+	AT_rich		Low_complexity
BX248320.3	17478	17631	6915004	+	DNA-5-2_DR	hAT-Tip100	DNA
BX248320.3	18992	19247	6915005	+	Kolobok-1_DR	Kolobok-T2	DNA
BX248320.3	20147	20252	6915006	+	HATN12_DR	hAT-Ac	DNA
BX248320.3	20563	20668	6915007	+	HATN12_DR	hAT-Ac	DNA
BX248320.3	21879	22148	6915008	-	Tc1N1_DR	CMC-EnSpm?	DNA
BX248320.3	22281	22702	6915009	+	HATN1_DR	hAT	DNA
BX248320.3	24335	24525	6915010	+	ASAT_CY		Satellite
BX248320.3	24748	24782	6915011	+	AT_rich		Low_complexity
BX248320.3	24807	25005	6915012	+	hAT-N53_DR	hAT-Ac?	DNA
BX248320.3	25924	26035	6915013	-	DNA-TTAA-2_DR	PiggyBac?	DNA
BX248320.3	26034	26452	6915014	-	DNA-TTAA-2_DR	PiggyBac?	DNA
BX248320.3	26453	27225	6915015	-	DNA-3-2B_DR		DNA
BX248320.3	27226	27585	6915014	-	DNA-TTAA-2_DR	PiggyBac?	DNA
BX248320.3	27821	27856	6915016	+	AT_rich		Low_complexity
BX248320.3	28023	28149	6915017	+	DIRS-9_DR	Ngaro	LTR
BX248320.3	28037	28184	6915018	+	DIRS-1-LTR_DR	DIRS	LTR
BX248320.3	28194	28277	6915019	+	DIRS-1C-LTR_DR	Ngaro	LTR
BX248320.3	28485	28584	6915020	-	ANGEL	hAT	DNA
BX248320.3	28607	28719	6915021	+	ANGEL	hAT	DNA
BX248320.3	29154	29177	6915022	+	AT_rich		Low_complexity
BX248320.3	29338	29404	6915023	+	Gypsy136-LTR_DR	Gypsy	LTR
BX248320.3	29410	29448	6915024	-	tRNA-His-CAY_		tRNA
BX248320.3	29451	29561	6915025	-	Gypsy136-LTR_DR	Gypsy	LTR
BX248320.3	29556	29606	6915025	-	Gypsy136-LTR_DR	Gypsy	LTR
BX248320.3	29771	31328	6915026	+	TZF28	TcMar-Tc1	DNA
BX248320.3	31406	31606	6915027	-	TDR22		DNA
BX248320.3	32389	32745	6915028	+	EnSpm-N8_DR	CMC-EnSpm	DNA
BX248320.3	32767	32917	6915029	+	TDR13		DNA
BX248320.3	32918	33098	6915030	+	DIRS-1D-LTR_DR	Ngaro	LTR
BX248320.3	33099	33167	6915031	-	Harbinger-N10_DR	PIF-Harbinger	DNA
BX248320.3	33155	33311	6915031	-	Harbinger-N10_DR	PIF-Harbinger	DNA
BX248320.3	33312	33423	6915030	+	DIRS-1D-LTR_DR	Ngaro	LTR
BX248320.3	33586	33908	6915032	+	DNA21TA1_DR	TcMar-Tc1	DNA
BX248320.3	33900	34062	6915033	+	DNA21TA1_DR	TcMar-Tc1	DNA
BX248320.3	34147	34494	6915034	-	HE2_DR	V	SINE
BX248320.3	34434	34519	6915035	-	DNA8-9_DR	hAT	DNA
BX248320.3	34574	34762	6915036	+	HE1_DR1	V	SINE
BX248320.3	34576	34806	6915037	+	DNA2-1_DR	TcMar?	DNA
BX248320.3	34867	35005	6915038	-	DNA-TA-2_DR		DNA
BX248320.3	34911	35061	6915038	+	DNA-TA-2_DR		DNA
BX248320.3	35800	35931	6915039	-	DNA-X-3_DR		DNA
BX248320.3	35842	36020	6915040	-	HE1_DR1	V	SINE
BX248320.3	36129	36485	6915041	+	CR1-21_DR	Rex-Babar	LINE
BX248320.3	36632	36667	6915042	+	AT_rich		Low_complexity
BX248320.3	37201	37251	6915043	+	DNA-1-2_DR		DNA
BX248320.3	37249	37284	6915044	-	DNA11TA1_DR	TcMar-Tc1	DNA
BX248320.3	37285	37370	6915045	+	(TA)n		Simple_repeat
BX248320.3	37371	37504	6915044	-	DNA11TA1_DR	TcMar-Tc1	DNA
BX248320.3	37508	37810	6915046	+	ERV1-N4-LTR_DR		LTR
BX248320.3	37811	38667	6915047	+	Looper-N7_DR	PiggyBac	DNA
BX248320.3	38654	38751	6915048	+	DNA11TA1_DR	TcMar-Tc1	DNA
BX248320.3	39406	40648	6915049	-	MSAT-4_DR		Satellite
BX248320.3	40667	40881	6915049	-	MSAT-4_DR		Satellite
BX248320.3	40886	40967	6915050	+	DNA-9-1_DR		DNA
BX248320.3	41902	42134	6915051	-	ACROBAT2	TcMar-Stowaway?	DNA
BX248320.3	42138	42195	6915052	+	LOOPERN5_DR	PiggyBac	DNA
BX248320.3	42189	42575	6915053	+	LOOPERN5_DR	PiggyBac	DNA
BX248320.3	42584	42933	6915054	+	HE2_DR	V	SINE
BX248320.3	42935	43093	6915051	-	ACROBAT2	TcMar-Stowaway?	DNA
BX248320.3	43212	43248	6915055	+	(ATG)n
BX248320.3	43254	43410	6915056	-	TE-X-5_DR		Satellite
BX248320.3	43273	43490	6915057	-	HE1_DR1	V	SINE
BX248320.3	43279	43583	6915058	+	EnSpm-6N1_DR	CMC-EnSpm	DNA
BX248320.3	44459	44917	6915059	-	Kolobok-N5_DR	Kolobok-T2?	DNA
BX248320.3	45080	45145	6915060	+	hAT-N49_DR	hAT-Ac	DNA
BX248320.3	45148	45180	6915061	+	(CAGT)n		Simple_repeat
BX248320.3	45181	45525	6915062	-	CR1-30_DR	Rex-Babar	LINE
BX248320.3	45526	45551	6915063	+	(TAA)n		Simple_repeat
BX248320.3	45552	46023	6915064	-	L2-41_DRe	L2	LINE
BX248320.3	46033	46707	6915062	-	CR1-30_DR	Rex-Babar	LINE
BX248320.3	46722	46875	6915065	+	hAT-N49_DR	hAT-Ac	DNA
BX248320.3	46854	47061	6915066	+	hAT-N49_DR	hAT-Ac	DNA
BX248320.3	47064	47347	6915067	+	HATN6_DR	hAT-Ac	DNA
BX248320.3	47348	47616	6915068	-	HATN8_DR		DNA
BX248320.3	47617	48257	6915069	+	HATN6_DR	hAT-Ac	DNA
BX248320.3	48264	48471	6915070	+	hAT-N49_DR	hAT-Ac	DNA
BX248320.3	48545	48663	6915071	+	ANGEL	hAT	DNA
BX248320.3	48650	48722	6915072	+	hAT-N49_DR	hAT-Ac	DNA
BX248320.3	49576	49942	6915073	+	TDR2	TcMar-Tc1	DNA
BX248320.3	50046	50485	6915074	-	DNAX-1_DR		DNA
BX248320.3	50495	51166	6915075	-	HarbingerN2_DR	PIF-Harbinger	DNA
BX248320.3	51281	51624	6915076	+	HE1_DR1	V	SINE
BX248320.3	51625	51654	6915077	+	(TGAA)n		Simple_repeat
BX248320.3	52421	52452	6915078	+	AT_rich		Low_complexity
BX248320.3	52566	52610	6915079	+	AT_rich		Low_complexity
BX248320.3	52611	53495	6915080	-	TDR2	TcMar-Tc1	DNA
BX248320.3	53619	53726	6915081	-	HATN12_DR	hAT-Ac	DNA
BX248320.3	54287	54551	6915082	+	DNA-X-4_DR		DNA
BX248320.3	54551	54610	6915083	+	TDR2	TcMar-Tc1	DNA
BX248320.3	54612	54960	6915084	+	HarbingerN6_DR	PIF-Harbinger	DNA
BX248320.3	61	99	11578878	N	DUST
BX248320.3	157	249	11578879	N	DUST
BX248320.3	315	328	11578880	N	DUST
BX248320.3	916	922	11578881	N	DUST
BX248320.3	2609	2619	11578882	N	DUST
BX248320.3	3055	3126	11578883	N	DUST
BX248320.3	4607	4633	11578884	N	DUST
BX248320.3	5127	5186	11578885	N	DUST
BX248320.3	5298	5306	11578886	N	DUST
BX248320.3	5380	5424	11578887	N	DUST
BX248320.3	5439	5528	11578888	N	DUST
BX248320.3	5531	5539	11578889	N	DUST
BX248320.3	5554	5575	11578890	N	DUST
BX248320.3	5805	5958	11578891	N	DUST
BX248320.3	6328	6439	11578892	N	DUST
BX248320.3	6716	6752	11578893	N	DUST
BX248320.3	8961	8998	11578894	N	DUST
BX248320.3	9118	9126	11578895	N	DUST
BX248320.3	9187	9194	11578896	N	DUST
BX248320.3	9252	9265	11578897	N	DUST
BX248320.3	9769	9817	11578898	N	DUST
BX248320.3	10175	10262	11578899	N	DUST
BX248320.3	10854	10926	11578900	N	DUST
BX248320.3	11155	11161	11578901	N	DUST
BX248320.3	11279	11285	11578902	N	DUST
BX248320.3	11450	11457	11578903	N	DUST
BX248320.3	11817	11824	11578904	N	DUST
BX248320.3	12210	12237	11578905	N	DUST
BX248320.3	12299	12419	11578906	N	DUST
BX248320.3	13163	13169	11578907	N	DUST
BX248320.3	13668	13716	11578908	N	DUST
BX248320.3	13969	14053	11578909	N	DUST
BX248320.3	15248	15313	11578910	N	DUST
BX248320.3	15768	15785	11578911	N	DUST
BX248320.3	15849	15856	11578912	N	DUST
BX248320.3	16052	16191	11578913	N	DUST
BX248320.3	16457	16490	11578914	N	DUST
BX248320.3	16667	16691	11578915	N	DUST
BX248320.3	17103	17140	11578916	N	DUST
BX248320.3	17171	17177	11578917	N	DUST
BX248320.3	17417	17433	11578918	N	DUST
BX248320.3	17710	17716	11578919	N	DUST
BX248320.3	19679	19707	11578920	N	DUST
BX248320.3	20396	20403	11578921	N	DUST
BX248320.3	20857	20863	11578922	N	DUST
BX248320.3	21145	21154	11578923	N	DUST
BX248320.3	21170	21176	11578924	N	DUST
BX248320.3	21451	21482	11578925	N	DUST
BX248320.3	21885	21891	11578926	N	DUST
BX248320.3	22381	22389	11578927	N	DUST
BX248320.3	22860	22867	11578928	N	DUST
BX248320.3	23288	23360	11578929	N	DUST
BX248320.3	24314	24331	11578930	N	DUST
BX248320.3	24705	24736	11578931	N	DUST
BX248320.3	25507	25525	11578932	N	DUST
BX248320.3	25651	25657	11578933	N	DUST
BX248320.3	26225	26232	11578934	N	DUST
BX248320.3	26511	26518	11578935	N	DUST
BX248320.3	26602	26619	11578936	N	DUST
BX248320.3	26658	26664	11578937	N	DUST
BX248320.3	27702	27708	11578938	N	DUST
BX248320.3	27821	27839	11578939	N	DUST
BX248320.3	27906	27929	11578940	N	DUST
BX248320.3	28325	28332	11578941	N	DUST
BX248320.3	28425	28442	11578942	N	DUST
BX248320.3	28555	28568	11578943	N	DUST
BX248320.3	28669	28675	11578944	N	DUST
BX248320.3	28893	28900	11578945	N	DUST
BX248320.3	29152	29158	11578946	N	DUST
BX248320.3	29921	29932	11578947	N	DUST
BX248320.3	31155	31177	11578948	N	DUST
BX248320.3	31278	31285	11578949	N	DUST
BX248320.3	32339	32345	11578950	N	DUST
BX248320.3	32642	32705	11578951	N	DUST
BX248320.3	32877	32940	11578952	N	DUST
BX248320.3	33707	33714	11578953	N	DUST
BX248320.3	34210	34216	11578954	N	DUST
BX248320.3	35255	35261	11578955	N	DUST
BX248320.3	35785	35876	11578956	N	DUST
BX248320.3	37263	37370	11578957	N	DUST
BX248320.3	37422	37429	11578958	N	DUST
BX248320.3	37853	37867	11578959	N	DUST
BX248320.3	38681	38687	11578960	N	DUST
BX248320.3	39108	39115	11578961	N	DUST
BX248320.3	39200	39206	11578962	N	DUST
BX248320.3	39246	39278	11578963	N	DUST
BX248320.3	39318	39325	11578964	N	DUST
BX248320.3	39419	39484	11578965	N	DUST
BX248320.3	41392	41403	11578966	N	DUST
BX248320.3	43212	43241	11578967	N	DUST
BX248320.3	43846	43852	11578968	N	DUST
BX248320.3	44481	44490	11578969	N	DUST
BX248320.3	44626	44647	11578970	N	DUST
BX248320.3	45151	45180	11578971	N	DUST
BX248320.3	45526	45551	11578972	N	DUST
BX248320.3	45618	45641	11578973	N	DUST
BX248320.3	46179	46185	11578974	N	DUST
BX248320.3	46340	46360	11578975	N	DUST
BX248320.3	47146	47153	11578976	N	DUST
BX248320.3	47366	47374	11578977	N	DUST
BX248320.3	48013	48082	11578978	N	DUST
BX248320.3	48212	48218	11578979	N	DUST
BX248320.3	48590	48596	11578980	N	DUST
BX248320.3	49268	49274	11578981	N	DUST
BX248320.3	49438	49444	11578982	N	DUST
BX248320.3	49678	49684	11578983	N	DUST
BX248320.3	51625	51651	11578984	N	DUST
BX248320.3	52134	52143	11578985	N	DUST
BX248320.3	52421	52610	11578986	N	DUST
BX248320.3	54182	54203	11578987	N	DUST

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Curator Links

Alignment for CU468236.5 and BX248320.3

Alignment Summary

Alignment 1 of 1