Alignment last updated: 03/27/2014 06:50:21

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for BX649641.20 and BX571681.7

Download Genome Workbench

Swap Rows Rotate Orientations

BX649641.20 Zebrafish DNA sequence from clone CH211-223O1 in linkage group 18, complete sequence [htgs_phase3]

Length: 134,779 bp

BX571681.7 Zebrafish DNA sequence from clone DKEY-73N10 in linkage group 18, complete sequence [htgs_phase3]

Length: 184,543 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 134526
Total Length: 2000
Aligned Length: 2000
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	1	182543	-	-	chenhc	Taxid 7955 chrom 18 Primary assembly	2014-03-27 06:50:21.340	115579	134526	GRCz11, GRCz10

Alignment 1 of 1

 BX649641.20 : - : 2000..1
 BX571681.7 : - : 184543..182544
 Mismatches = 0, Gaps = 0, Length = 2000
 Percent identity = 100%
 Score = 3694 bits (2000), Expect = 0
  17 BAC and 8 Fosmid bridging clones.
  17 BAC and 7 Fosmid concordant clones.
  0 BAC and 1 Fosmid discordant clones.

BX649641.20 <2000    aagctttagctgttaatttaactggtcttttttccctttcaggctcattttcaacagaag 1941   
BX571681.7  <184543  ............................................................ 184484 

BX649641.20 <1940    ttaaaccttgatcagtcacatccaccatttcaacattcaaattgatttcattttccattt 1881   
BX571681.7  <184483  ............................................................ 184424 

BX649641.20 <1880    tgcaaattgtaaaacccaataaacacacataagaaaagttcagtcagtcatgggcaacca 1821   
BX571681.7  <184423  ............................................................ 184364 

BX649641.20 <1820    atgcattggatttacgctttaaaccttattgtgtgcacacatagtttccatatggccata 1761   
BX571681.7  <184363  ............................................................ 184304 

BX649641.20 <1760    atgatgatgttgttgcaacaaacatacctattgtgctgtttatcaaacgcgaagagatga 1701   
BX571681.7  <184303  ............................................................ 184244 

BX649641.20 <1700    acgcagcgtagattcaccttaatgcaggaaaccagaagaaagccgatccaaacgaactca 1641   
BX571681.7  <184243  ............................................................ 184184 

BX649641.20 <1640    ctcagatgctgaagaaacgctgtcctcacgtgcagcaaatgaagccttgatccaaacgaa 1581   
BX571681.7  <184183  ............................................................ 184124 

BX649641.20 <1580    cgtcgctgtccttgtctgtagaaacaccatgccttgctgtccactccagcggcgtctcaa 1521   
BX571681.7  <184123  ............................................................ 184064 

BX649641.20 <1520    ttgtcccacgaagcaaagtttttgacttttgtgtagcggcttaccaatgccgctattgtt 1461   
BX571681.7  <184063  ............................................................ 184004 

BX649641.20 <1460    ggtagagtgagcaagtttttaacgcgtaaaaagtcagagtccgtaagcaaatagatgcaa 1401   
BX571681.7  <184003  ............................................................ 183944 

BX649641.20 <1400    ataaaaacatatttattgtccaatcaacttccaatcaacagaattactcaatcactttcc 1341   
BX571681.7  <183943  ............................................................ 183884 

BX649641.20 <1340    tttatctaaaagcacacttccctgtttccttcagttacgagacgatgcaatacgatacgg 1281   
BX571681.7  <183883  ............................................................ 183824 

BX649641.20 <1280    tcaaaaactgtgtgcttcctaccaacactgtcttcctccatgcagtgaagccacagttat 1221   
BX571681.7  <183823  ............................................................ 183764 

BX649641.20 <1220    atagtgtcgtactgacaccttgtggccaatcgccaatatacaatgtatggctcctacaat 1161   
BX571681.7  <183763  ............................................................ 183704 

BX649641.20 <1160    gtgtaataattgatagtttttttgttaaaaattaactagaaaaacaaggacttccggtta 1101   
BX571681.7  <183703  ............................................................ 183644 

BX649641.20 <1100    tggcgcgcactggttagtcacgctaatttgagctgatgccaacttctcttacattcaaac 1041   
BX571681.7  <183643  ............................................................ 183584 

BX649641.20 <1040    cttaaaagaagaccaaatcgaacccgaacgtgatatgcattaaaggaaacactcctgcaa 981    
BX571681.7  <183583  ............................................................ 183524 

BX649641.20 <980     ggaactatgccgccaaaaaatctaaagtcgggacaacagccgaaatttcagccgcaaact 921    
BX571681.7  <183523  ............................................................ 183464 

BX649641.20 <920     ggctctgacaacatggaacaagcaagcaagctagcggctaatgaacaaaatgacgctgac 861    
BX571681.7  <183463  ............................................................ 183404 

BX649641.20 <860     gggaaagactccacaaactcaattatttcagccatacaagcactaagggatgatatgact 801    
BX571681.7  <183403  ............................................................ 183344 

BX649641.20 <800     aaacattcgaccgacatgcttgaagctattaatgggttgaaaacagaattggtgtcacat 741    
BX571681.7  <183343  ............................................................ 183284 

BX649641.20 <740     tcctaaagaatcggcgaagcagaggacaggatatcacaaactgaggaagatgttgcgacc 681    
BX571681.7  <183283  ............................................................ 183224 

BX649641.20 <680     cttcaccaaaagacaaaaaaactggaacaaacagtcgagactttaacttacaaaatccaa 621    
BX571681.7  <183223  ............................................................ 183164 

BX649641.20 <620     gatctagaagatcgtggacgtcgttcaaatataagaatgatcggactacccgaaaaggca 561    
BX571681.7  <183163  ............................................................ 183104 

BX649641.20 <560     gaagggacggacacatgcgcttttctggaggattggctccccaaaatactgacagattgc 501    
BX571681.7  <183103  ............................................................ 183044 

BX649641.20 <500     ttcactacagctcctacaatcgagcgagcacaccgagtcggaccaataaatacgaatcgt 441    
BX571681.7  <183043  ............................................................ 182984 

BX649641.20 <440     cccaggccaatagtgatgaagttcttgaattataaggatcgcgaaaaaacacttcgggcg 381    
BX571681.7  <182983  ............................................................ 182924 

BX649641.20 <380     gccaggaaagtaaaagaactccgctacgaaggtcagcaaattagcctgttcctggattta 321    
BX571681.7  <182923  ............................................................ 182864 

BX649641.20 <320     tctgccgagacccgtcaacgccagcgatgcttcgatggagtaaaagcccagctgaaatcc 261    
BX571681.7  <182863  ............................................................ 182804 

BX649641.20 <260     atggacatcagatacggaatgctctatcctgctcacttgatagtgacccacgcagacaag 201    
BX571681.7  <182803  ............................................................ 182744 

BX649641.20 <200     cgacgtattttcaagactgtctcagaagtggaggaatttatccgcggactggaaagatcc 141    
BX571681.7  <182743  ............................................................ 182684 

BX649641.20 <140     acataaacgagactatgataaaggtttgaaaactaaggctggcatacatttttactttat 81     
BX571681.7  <182683  ............................................................ 182624 

BX649641.20 <80      ttttatatggacatcttctggacattactcgttttgcccctctgataaagacattaatac 21     
BX571681.7  <182623  ............................................................ 182564 

BX649641.20 <20      gaatcttataggcatgtata 1      
BX571681.7  <182563  .................... 182544

Events

Type

Date

Whodid

Comment

315159

InitHasAlign

03/27/2014 06:49:26

cgi_chen

find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Feb  4 2014. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 38141682
Info: Running Blast Filter: 
Info: CBlastAligner found 88 hits.
Info: Determined ID: gi|38141682 needs Merging.
Info: Merged into 63 alignments.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|38141682 needs Merging.
Info: Merged into 63 alignments.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|38141682 needs Merging.
Info: Merged into 63 alignments.
Info: Best Rank: 0 in  for 38141682 of 1
Info:  NG returned 1 alignments

f_cron_job

315195

CreateSwitchPt

03/27/2014 06:50:21

chenhc

tpf_m_BuilderId: t Toolkit wrapper version: built Mar 19 2014 using /home/boukn/code/toolkit/c++/GCC481-ReleaseMT64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH211-110A7				BX649641.20	100%	pos 89136 (F+)
CH211-117I10				BX571681.7	100%	pos 51034 (F-)
CH211-11J8				BX649641.20	99.78%	pos 60745 (F+)
CH211-135G8				BX571681.7	100%	pos 10994 (F-)
CH211-142D8				BX649641.20	98.96%	pos 30992 (F+)
CH211-163A17				BX571681.7	99.82%	pos 51229 (F-)
CH211-185N1	BX649641.20	99.85%	pos 122172 (R+)
CH211-1K8				BX571681.7	99.79%	pos 99894 (F-)
CH211-201L11	BX571681.7	100%	pos 136141 (R-)
CH211-216B2	BX571681.7	98.65%	pos 136475 (R-)
CH211-223O1	BX571681.7	99.87%	pos 100378 (R+)
CH211-239B2				BX571681.7	99.03%	pos 136943 (F+)
CH211-239D10				BX571681.7	99.19%	pos 136942 (F+)
CH211-239J19				BX649641.20	100%	pos 83847 (F+)
CH211-251F22				BX571681.7	98.46%	pos 64053 (F-)
CH211-264K11	BX571681.7	100%	pos 66744 (R-)
CH211-265L8	BX649641.20	100%	pos 127269 (R+)
CH211-270J3	BX571681.7	100%	pos 11020 (R-)
CH211-276N19	BX649641.20	100%	pos 99464 (R+)
CH211-277L23				BX571681.7	100%	pos 136945 (F+)
CH211-277P9	BX571681.7	99.8%	pos 67054 (R+)	BX649641.20	100%	pos 34803 (F-)
CH211-285I22	BX571681.7	100%	pos 136944 (R+)	BX649641.20	100%	pos 126351 (F-)
CH211-30P24	BX649641.20	100%	pos 57714 (R+)
CH211-48C13				BX649641.20	100%	pos 3788 (F+)
CH211-48C13				BX649641.20	100%	pos 3811 (F+)
CH211-58G2				BX571681.7	100%	pos 138145 (F-)
CH211-58G2				BX571681.7	100%	pos 138195 (F-)
CH211-58G3				BX571681.7	100%	pos 138104 (F-)
CH211-58G3				BX571681.7	100%	pos 138144 (F-)
CH211-83K14	BX649641.20	98.63%	pos 4378 (R+)
CH211-92O7	BX571681.7	100%	pos 36137 (R-)
CH211-92O7	BX571681.7	100%	pos 36105 (R-)
CH211-97N24				BX571681.7	97.06%	pos 169468 (F+)
CH73-105O12	BX571681.7	100%	pos 110305 (R+)	BX649641.20	100%	pos 27042 (F-)
CH73-106G4	BX649641.20	100%	pos 121267 (R-)	BX649641.20	99.87%	pos 12768 (F+)
CH73-111K13				BX571681.7	99.87%	pos 66175 (F-)
CH73-129M12	BX649641.20	100%	pos 127285 (R+)
CH73-137J3	BX571681.7	99.85%	pos 177128 (R-)	BX571681.7	100%	pos 51931 (F+)
CH73-139F2				BX649641.20	100%	pos 127327 (F+)
CH73-141P7				BX571681.7	100%	pos 69514 (F-)
CH73-149D24	BX649641.20	100%	pos 3886 (R+)
CH73-151M24	BX649641.20	99.7%	pos 59931 (R-)	BX571681.7	98.82%	pos 144735 (F+)
				BX571681.7	98.82%	pos 116356 (F+)
				BX571681.7	98.82%	pos 173893 (F+)
				BX649641.20	98.82%	pos 85359 (F+)
				BX649641.20	98.82%	pos 27885 (F+)
				BX649641.20	98.82%	pos 52143 (F+)
CH73-154L12	BX649641.20	100%	pos 3903 (R+)
CH73-157L3				BX571681.7	100%	pos 171592 (F-)
CH73-160A19				BX649641.20	99.84%	pos 122247 (F+)
CH73-160J8				BX649641.20	98.36%	pos 3952 (F+)
CH73-163A12				BX571681.7	99.84%	pos 35948 (F-)
CH73-165A11	BX571681.7	100%	pos 92901 (R-)
CH73-194O7				BX649641.20	100%	pos 99896 (F+)
CH73-197M13	BX571681.7	100%	pos 7989 (R-)
CH73-209G21	BX649641.20	99.87%	pos 83877 (R+)
CH73-210M22	BX571681.7	100%	pos 85336 (R-)
CH73-217C4	BX571681.7	100%	pos 99515 (R-)
CH73-224C1	BX571681.7	100%	pos 69193 (R-)
CH73-227H21	BX571681.7	100%	pos 136993 (R+)	BX649641.20	99.85%	pos 51036 (F-)
CH73-228H21	BX571681.7	100%	pos 137034 (R+)	BX649641.20	100%	pos 51322 (F-)
CH73-240D14				BX649641.20	100%	pos 122243 (F+)
CH73-240F14				BX649641.20	100%	pos 122448 (F+)
CH73-243N9	BX571681.7	100%	pos 54842 (R-)
CH73-245H11				BX649641.20	100%	pos 89195 (F+)
CH73-246H11				BX649641.20	100%	pos 89199 (F+)
CH73-248B5				BX649641.20	100%	pos 127291 (F+)
CH73-249O8	BX649641.20	100%	pos 61012 (R+)
CH73-263B14				BX649641.20	99.7%	pos 3906 (F+)
CH73-263N14				BX571681.7	99.85%	pos 63449 (F-)
CH73-266E6	BX571681.7	99.59%	pos 136995 (R+)
CH73-266H21	BX649641.20	100%	pos 127283 (R+)
CH73-272H10				BX571681.7	97.41%	pos 136038 (F-)
CH73-272J19	BX571681.7	99.74%	pos 10515 (R-)
CH73-275P2				BX649641.20	100%	pos 3909 (F+)
CH73-276F4				BX649641.20	100%	pos 85180 (F+)
				BX571681.7	100%	pos 144556 (F+)
				BX649641.20	100%	pos 27706 (F+)
CH73-278K22				BX649641.20	99.87%	pos 85140 (F+)
CH73-299J18				BX571681.7	97.87%	pos 135903 (F-)
CH73-303K16	BX571681.7	99.8%	pos 175033 (R-)	BX571681.7	100%	pos 70102 (F+)
CH73-320A21				BX571681.7	100%	pos 69259 (F-)
CH73-332P23	BX649641.20	99.69%	pos 26817 (R-)	BX571681.7	100%	pos 119463 (F+)
CH73-337O18	BX649641.20	100%	pos 51043 (R-)	BX571681.7	99.87%	pos 137001 (F+)
CH73-348P23				BX571681.7	99.85%	pos 69236 (F-)
CH73-34J6	BX571681.7	100%	pos 152071 (R+)
CH73-356D23				BX649641.20	100%	pos 85167 (F+)
CH73-363G6	BX571681.7	100%	pos 110312 (R+)
CH73-364N22				BX649641.20	100%	pos 99615 (F+)
CH73-366M6	BX649641.20	100%	pos 127364 (R+)
CH73-367L6	BX571681.7	97.78%	pos 136097 (R-)
CH73-369B1	BX571681.7	99.73%	pos 169412 (R+)
CH73-371F15	BX571681.7	100%	pos 173701 (R+)	BX649641.20	100%	pos 112261 (F-)
CH73-372P10	BX649641.20	99.72%	pos 83068 (R-)	BX571681.7	100%	pos 147809 (F+)
CH73-37J21	BX571681.7	100%	pos 173703 (R+)	BX649641.20	99.69%	pos 121384 (F-)
CH73-384K11				BX571681.7	100%	pos 63417 (F-)
CH73-384K12				BX571681.7	100%	pos 63439 (F-)
CH73-388P12	BX649641.20	100%	pos 99558 (R+)
CH73-39I17				BX571681.7	100%	pos 85367 (F-)
CH73-3N6	BX571681.7	99.82%	pos 123890 (R+)	BX649641.20	100%	pos 59967 (F-)
CH73-41C9	BX571681.7	100%	pos 124034 (R+)
CH73-41C9	BX649641.20	100%	pos 101164 (R+)
CH73-44I11	BX649641.20	100%	pos 85166 (R+)
CH73-44P4				BX649641.20	99.86%	pos 127291 (F+)
CH73-47N14	BX649641.20	100%	pos 27694 (R+)
CH73-51P7	BX571681.7	100%	pos 14167 (R+)	BX571681.7	100%	pos 143608 (F-)
CH73-58N10	BX649641.20	100%	pos 83040 (R-)	BX571681.7	100%	pos 173706 (F+)
CH73-59I5	BX571681.7	99.74%	pos 63785 (R-)
CH73-5A8	BX649641.20	100%	pos 121346 (R-)	BX571681.7	100%	pos 167719 (F+)
CH73-64N20				BX571681.7	100%	pos 63569 (F-)
CH73-66N7	BX649641.20	100%	pos 121353 (R-)	BX649641.20	100%	pos 31063 (F+)
CH73-71M18				BX649641.20	100%	pos 51899 (F+)
				BX649641.20	100%	pos 85169 (F+)
				BX649641.20	100%	pos 27695 (F+)
				BX571681.7	100%	pos 144545 (F+)
CH73-78M2	BX571681.7	100%	pos 109309 (R-)	BX571681.7	100%	pos 8855 (F+)
CH73-79P7				BX571681.7	100%	pos 69190 (F-)
CH73-80H1	BX571681.7	100%	pos 64355 (R+)
CH73-90L13	BX571681.7	99.73%	pos 172460 (R+)	BX649641.20	99.87%	pos 83000 (F-)
DKEY-101I5				BX571681.7	100%	pos 26092 (F+)
DKEY-116G11				BX571681.7	99.68%	pos 90342 (F-)
DKEY-116J4				BX571681.7	100%	pos 100331 (F-)
DKEY-121I24				BX571681.7	100%	pos 76295 (F+)
DKEY-171G14	BX571681.7	99.85%	pos 86221 (R+)	BX649641.20	100%	pos 52496 (F-)
DKEY-181K9	BX571681.7	100%	pos 56078 (R+)
DKEY-184I10				BX571681.7	100%	pos 49266 (F-)
DKEY-248N8				BX649641.20	99.56%	pos 4339 (F-)
DKEY-273B11	BX571681.7	100%	pos 167014 (R-)
DKEY-277N20	BX649641.20	100%	pos 110859 (R+)
DKEY-286I1				BX649641.20	100%	pos 7652 (F+)
DKEY-288M4				BX649641.20	100%	pos 7063 (F-)
DKEY-56N1				BX649641.20	99.85%	pos 2064 (F+)
DKEY-69H14				BX571681.7	100%	pos 35859 (F+)
DKEY-73N10	BX571681.7	100%	pos 183902 (R-)	BX571681.7	99.85%	pos 49 (F+)
DKEY-73N10	BX649641.20	100%	pos 1359 (R-)
DKEY-91D13				BX571681.7	100%	pos 34440 (F+)
DKEY-93M13	BX571681.7	99.02%	pos 136357 (R-)
DKEY-94I23				BX649641.20	99.84%	pos 13596 (F+)
DKEY-97F12				BX649641.20	100%	pos 86407 (F+)
DKEY-98O6	BX649641.20	100%	pos 132017 (R+)
DKEYP-29D23				BX571681.7	100%	pos 50022 (F+)
DKEYP-31P8	BX571681.7	100%	pos 136306 (R-)
DKEYP-38F23				BX571681.7	100%	pos 165071 (F-)
DKEYP-38F5	BX571681.7	99.4%	pos 51303 (R+)
DKEYP-99A10				BX649641.20	99.77%	pos 109955 (F+)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH1073-101K8	BX649641.20	100%	pos 121681 (R-)
CH1073-108A7	BX571681.7	100%	pos 58306 (R-)	BX571681.7	100%	pos 19889 (F+)
CH1073-119H4				BX649641.20	100%	pos 110834 (F-)
CH1073-119N10	BX649641.20	100%	pos 61288 (R+)	BX649641.20	100%	pos 97781 (F-)
CH1073-131B12	BX571681.7	100%	pos 64626 (R+)	BX571681.7	100%	pos 99211 (F-)
CH1073-132H22				BX571681.7	100%	pos 83468 (F-)
CH1073-134A1				BX571681.7	100%	pos 169445 (F-)
CH1073-144M13	BX571681.7	100%	pos 111537 (R+)	BX571681.7	100%	pos 141156 (F-)
CH1073-180L22	BX649641.20	100%	pos 83623 (R+)	BX649641.20	99.62%	pos 114222 (F-)
CH1073-188E17	BX571681.7	100%	pos 166097 (R-)	BX571681.7	100%	pos 132241 (F+)
CH1073-189M9				BX571681.7	100%	pos 24467 (F-)
CH1073-195L7	BX571681.7	100%	pos 98433 (R-)
CH1073-195L7	BX571681.7	100%	pos 98511 (R-)
CH1073-200D10	BX571681.7	100%	pos 93603 (R+)	BX571681.7	100%	pos 125998 (F-)
CH1073-202I14	BX649641.20	100%	pos 48569 (R-)	BX649641.20	100%	pos 16630 (F+)
CH1073-212P18	BX649641.20	100%	pos 29606 (R+)	BX649641.20	100%	pos 70343 (F-)
CH1073-234A14	BX649641.20	100%	pos 112048 (R-)
CH1073-245N12	BX571681.7	100%	pos 54784 (R+)
CH1073-269H8	BX571681.7	99.81%	pos 67091 (R-)	BX571681.7	100%	pos 35798 (F+)
CH1073-288J15	BX571681.7	100%	pos 125988 (R-)
CH1073-301L23				BX571681.7	99.38%	pos 36776 (F+)
CH1073-307J20	BX649641.20	99.72%	pos 22831 (R+)	BX649641.20	100%	pos 55212 (F-)
CH1073-317O24	BX571681.7	100%	pos 53435 (R-)	BX571681.7	100%	pos 20498 (F+)
CH1073-338H18	BX649641.20	100%	pos 62879 (R+)	BX649641.20	100%	pos 101779 (F-)
CH1073-37I10	BX649641.20	100%	pos 115981 (R-)	BX649641.20	100%	pos 77371 (F+)
CH1073-37J10				BX649641.20	100%	pos 77370 (F+)
CH1073-391F17	BX571681.7	100%	pos 8810 (R-)
CH1073-396N2	BX571681.7	100%	pos 74091 (R-)	BX571681.7	100%	pos 35434 (F+)
CH1073-400F22	BX571681.7	100%	pos 34814 (R-)	BX571681.7	100%	pos 5183 (F+)
CH1073-434G17	BX571681.7	100%	pos 64626 (R+)	BX571681.7	100%	pos 99221 (F-)
CH1073-446L6				BX571681.7	100%	pos 16493 (F+)
CH1073-446N2				BX571681.7	100%	pos 100111 (F-)
CH1073-446N8	BX571681.7	100%	pos 59899 (R-)
CH1073-446P4	BX571681.7	100%	pos 64802 (R+)
CH1073-475K8	BX649641.20	100%	pos 7256 (R-)
CH1073-47H7	BX571681.7	100%	pos 145087 (R-)	BX571681.7	100%	pos 112250 (F+)
CH1073-480O3	BX649641.20	99.81%	pos 31341 (R+)	BX649641.20	100%	pos 72590 (F-)
CH1073-48H7	BX571681.7	100%	pos 145032 (R-)	BX571681.7	100%	pos 112248 (F+)
CH1073-497O10	BX571681.7	100%	pos 155451 (R-)
CH1073-505P15	BX571681.7	100%	pos 172612 (R-)	BX571681.7	100%	pos 139733 (F+)
CH1073-509I15	BX571681.7	100%	pos 15033 (R-)
CH1073-511K14	BX571681.7	100%	pos 151442 (R+)	BX649641.20	100%	pos 2212 (F-)
CH1073-51K4	BX571681.7	100%	pos 133815 (R+)
CH1073-522H15	BX571681.7	100%	pos 16735 (R+)	BX571681.7	99.28%	pos 56868 (F-)
CH1073-535J16	BX571681.7	99.31%	pos 137245 (R+)
CH1073-543F13				BX571681.7	99%	pos 136450 (F-)
CH1073-549C5				BX571681.7	100%	pos 125080 (F-)
CH1073-554N23	BX571681.7	100%	pos 26098 (R-)
CH1073-555F2	BX571681.7	99.84%	pos 147608 (R+)	BX571681.7	100%	pos 181404 (F-)
CH1073-556E19	BX571681.7	100%	pos 147603 (R+)	BX571681.7	100%	pos 181946 (F-)
CH1073-557B22	BX649641.20	100%	pos 4108 (R-)	BX571681.7	100%	pos 148384 (F+)
CH1073-557D17	BX649641.20	99.85%	pos 4111 (R-)
CH1073-563F24				BX571681.7	99.04%	pos 136419 (F-)
CH1073-563L1	BX571681.7	100%	pos 25767 (R-)
CH1073-564D4	BX571681.7	100%	pos 81220 (R+)	BX571681.7	100%	pos 109389 (F-)
CH1073-564D6	BX571681.7	100%	pos 81220 (R+)	BX571681.7	99.87%	pos 109352 (F-)
CH1073-580C14	BX571681.7	100%	pos 56104 (R+)	BX571681.7	100%	pos 91880 (F-)
CH1073-616G8	BX571681.7	100%	pos 113381 (R-)	BX571681.7	100%	pos 79733 (F+)
CH1073-61L7	BX649641.20	100%	pos 69995 (R+)	BX649641.20	100%	pos 104623 (F-)
CH1073-623F12				BX649641.20	100%	pos 239 (F+)
CH1073-623F12				BX571681.7	100%	pos 182782 (F+)
CH1073-629N10	BX571681.7	100%	pos 112862 (R-)	BX571681.7	100%	pos 77589 (F+)
CH1073-62D18	BX571681.7	100%	pos 132640 (R-)
CH1073-631O2	BX571681.7	100%	pos 112439 (R+)	BX571681.7	100%	pos 147090 (F-)
CH1073-639J8	BX571681.7	100%	pos 81220 (R+)
CH1073-64I2	BX571681.7	100%	pos 132081 (R-)
	BX649641.20	100%	pos 20218 (R-)
	BX649641.20	100%	pos 44052 (R-)
CH1073-673D5	BX649641.20	100%	pos 34851 (R-)	BX649641.20	99.62%	pos 3652 (F+)
CH1073-675O18	BX571681.7	100%	pos 154295 (R+)	BX649641.20	100%	pos 3154 (F-)
CH1073-689N9	BX649641.20	100%	pos 71430 (R-)	BX649641.20	100%	pos 41181 (F+)
CH1073-689O13	BX649641.20	100%	pos 58114 (R+)	BX649641.20	100%	pos 91060 (F-)
CH1073-6B2	BX571681.7	100%	pos 105892 (R-)	BX571681.7	100%	pos 85839 (F+)
CH1073-709F9	BX571681.7	99.85%	pos 123996 (R-)	BX571681.7	100%	pos 83239 (F+)
CH1073-716K2	BX571681.7	100%	pos 178524 (R-)	BX571681.7	100%	pos 142354 (F+)
CH1073-72K18	BX649641.20	100%	pos 19090 (R+)	BX649641.20	100%	pos 53193 (F-)
CH1073-738E22	BX571681.7	100%	pos 64202 (R-)
CH1073-749O17	BX649641.20	100%	pos 67981 (R-)	BX649641.20	100%	pos 36480 (F+)
CH1073-759M2				BX571681.7	100%	pos 13838 (F-)
CH1073-760K6	BX649641.20	99.85%	pos 64873 (R+)	BX649641.20	100%	pos 104157 (F-)
CH1073-768P8	BX649641.20	100%	pos 119584 (R+)
CH1073-772B9	BX649641.20	100%	pos 111301 (R+)
CH1073-777E2	BX571681.7	100%	pos 142058 (R-)	BX571681.7	99.7%	pos 110629 (F+)
CH1073-77C16	BX649641.20	100%	pos 28657 (R+)	BX571681.7	100%	pos 117221 (F+)
CH1073-77C16				BX649641.20	100%	pos 28750 (F+)
CH1073-781J5	BX571681.7	100%	pos 59376 (R-)	BX571681.7	99.75%	pos 34597 (F+)
CH1073-784F2				BX571681.7	100%	pos 137947 (F+)
CH1073-787K19	BX571681.7	100%	pos 121011 (R+)
CH1073-793A9				BX649641.20	100%	pos 99292 (F+)
CH1073-797L19	BX571681.7	99.69%	pos 6727 (R-)
CH1073-799C16	BX649641.20	100%	pos 133939 (R+)
CH1073-805E3	BX571681.7	100%	pos 124484 (R+)
CH1073-806P3	BX571681.7	99.78%	pos 109438 (R-)	BX571681.7	100%	pos 77730 (F+)
CH1073-813B18	BX571681.7	100%	pos 49923 (R+)
CH1073-822J2	BX571681.7	100%	pos 19238 (R+)	BX571681.7	100%	pos 60126 (F-)
CH1073-829C14	BX649641.20	100%	pos 133084 (R-)	BX649641.20	99.85%	pos 99682 (F+)
CH1073-829E14	BX649641.20	100%	pos 133177 (R-)	BX649641.20	99.83%	pos 99670 (F+)
CH1073-845E14				BX571681.7	100%	pos 113579 (F+)
CH1073-852K9	BX571681.7	99.87%	pos 52818 (R+)	BX571681.7	100%	pos 85219 (F-)
CH1073-853G5	BX571681.7	100%	pos 27165 (R-)
CH1073-853G5	BX571681.7	100%	pos 27222 (R-)
CH1073-856E18				BX571681.7	100%	pos 119639 (F-)
CH1073-859N20				BX649641.20	98.64%	pos 69727 (F-)
CH1073-865C4				BX571681.7	100%	pos 85839 (F+)
CH1073-875C8				BX649641.20	100%	pos 99836 (F+)
CH1073-879C4	BX571681.7	100%	pos 16029 (R-)
CH1073-889I24	BX649641.20	100%	pos 100277 (R+)
CH1073-892E2	BX571681.7	98.99%	pos 116738 (R+)	BX649641.20	100%	pos 26101 (F-)
	BX571681.7	98.99%	pos 145117 (R+)
	BX571681.7	98.99%	pos 174275 (R+)
	BX649641.20	98.99%	pos 28267 (R+)
	BX649641.20	98.99%	pos 52525 (R+)
CH1073-898M24	BX649641.20	100%	pos 46929 (R-)
	BX649641.20	100%	pos 70190 (R-)
	BX571681.7	100%	pos 111219 (R-)
CH1073-900N14	BX571681.7	100%	pos 116433 (R-)	BX571681.7	100%	pos 84032 (F+)
CH1073-905D12				BX571681.7	100%	pos 10339 (F+)
CH1073-913C11	BX571681.7	100%	pos 49921 (R+)
CH1073-914D22				BX571681.7	100%	pos 74278 (F-)
CH1073-924I22	BX649641.20	100%	pos 34203 (R-)	BX571681.7	100%	pos 180487 (F+)
CH1073-927B11	BX649641.20	100%	pos 126170 (R-)	BX649641.20	100%	pos 94178 (F+)
CH1073-93F14	BX571681.7	100%	pos 36641 (R-)	BX571681.7	100%	pos 36626 (F-)
CH1073-93F14	BX571681.7	100%	pos 1741 (R+)
CH1073-941B12				BX571681.7	100%	pos 146101 (F-)
CH1073-9A16	BX649641.20	99.21%	pos 8204 (R-)
ZFOS-1059D8	BX571681.7	100%	pos 51309 (R+)
ZFOS-1120E9	BX649641.20	99.73%	pos 118279 (R+)
ZFOS-1193D5	BX649641.20	100%	pos 6326 (R-)
ZFOS-129B1	BX649641.20	100%	pos 129776 (R-)	BX649641.20	100%	pos 87192 (F+)
ZFOS-1302A2				BX571681.7	98.72%	pos 137327 (F-)
ZFOS-1379G3	BX649641.20	99.73%	pos 55788 (R-)
ZFOS-1452D4	BX649641.20	99.21%	pos 3210 (R-)
ZFOS-1581A4	BX649641.20	100%	pos 11209 (R+)
ZFOS-1581H5				BX649641.20	100%	pos 51446 (F-)
ZFOS-1665H10	BX649641.20	98.87%	pos 42594 (R-)	BX649641.20	99.46%	pos 6530 (F+)
ZFOS-1682G9	BX649641.20	100%	pos 130670 (R+)
ZFOS-16F6				BX649641.20	100%	pos 122720 (F-)
ZFOS-1735E8	BX649641.20	100%	pos 5706 (R+)
ZFOS-1958E10	BX571681.7	99.64%	pos 157006 (R-)	BX571681.7	100%	pos 116861 (F+)
ZFOS-1977B3	BX571681.7	100%	pos 129140 (R+)
ZFOS-1977C3				BX571681.7	99.88%	pos 172875 (F-)
ZFOS-2003C9	BX571681.7	100%	pos 103493 (R+)	BX571681.7	100%	pos 142344 (F-)
ZFOS-2012H7	BX649641.20	100%	pos 132870 (R-)	BX649641.20	100%	pos 89526 (F+)
ZFOS-2116D7	BX649641.20	100%	pos 2351 (R-)	BX571681.7	100%	pos 141338 (F+)
ZFOS-2141D6	BX571681.7	100%	pos 145627 (R-)	BX571681.7	99.84%	pos 103560 (F+)
ZFOS-2141F2	BX571681.7	100%	pos 145705 (R-)	BX571681.7	100%	pos 103559 (F+)
ZFOS-2277H6				BX649641.20	100%	pos 114243 (F+)
ZFOS-2301E1	BX571681.7	100%	pos 98542 (R-)	BX571681.7	100%	pos 54872 (F+)
ZFOS-2340D10				BX649641.20	100%	pos 130936 (F+)
ZFOS-2658B9	BX571681.7	99.85%	pos 21570 (R+)
ZFOS-2672H4				BX571681.7	100%	pos 72180 (F+)
ZFOS-2916H5	BX649641.20	100%	pos 16855 (R-)	BX571681.7	100%	pos 154113 (F+)
ZFOS-356E7	BX649641.20	100%	pos 5711 (R+)
ZFOS-404G12	BX649641.20	100%	pos 133274 (R-)	BX649641.20	100%	pos 89184 (F+)
ZFOS-425D5	BX571681.7	100%	pos 119587 (R+)	BX571681.7	100%	pos 163501 (F-)
ZFOS-518F3	BX571681.7	100%	pos 176010 (R-)	BX571681.7	100%	pos 136622 (F+)
ZFOS-709E4	BX571681.7	99.78%	pos 94404 (R-)	BX571681.7	99.88%	pos 58753 (F+)
ZFOS-71D12	BX649641.20	100%	pos 130640 (R+)
ZFOS-769H2	BX649641.20	100%	pos 126764 (R-)	BX649641.20	100%	pos 90007 (F+)
ZFOS-79D7				BX571681.7	99.85%	pos 54491 (F+)
ZFOS-879C3	BX571681.7	100%	pos 25278 (R+)	BX571681.7	99.61%	pos 63294 (F-)
ZFOS-950B11				BX649641.20	100%	pos 126821 (F-)
ZFOS-953D11				BX649641.20	100%	pos 120317 (F+)
ZFOS-958A3	BX571681.7	100%	pos 155854 (R-)

Repeats

Too repeats, not showing repeat table.

Join Legend

Curator Links

Alignment for BX649641.20 and BX571681.7

Alignment Summary

Alignment 1 of 1