Alignment last updated: 05/13/2010 14:14:06

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignments for AL591214.8 and AL928802.7

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AL591214.8 Human DNA sequence from clone RP11-18I23 on chromosome 9, complete sequence [htgs_phase3]

Length: 66,959 bp

AL928802.7 Human DNA sequence from clone RP13-338G2 on chromosome 9, complete sequence [htgs_phase3]

Length: 27,017 bp

Alignment Summary

Join evaluation: green

Alignment count: 2

Go to Endhit Table

Alignment 1 Align ID: 60172 Total Length: 2000 Aligned Length: 1995 Percent Identity: 99.8496 Number of Gaps: 2 Number of Mismatches: 3 Source: CtgOverlap Seq-Align Valid Switchpoint: true (L) Valid Switchpoint: true (A) Valid Switchpoint: true (A)
Alignment 2 Align ID: 60173 Total Length: 2000 Aligned Length: 1995 Percent Identity: 99.8496 Number of Gaps: 2 Number of Mismatches: 3 Source: CtgOverlap Seq-Align Valid Switchpoint: true (L) Valid Switchpoint: true (A) Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
L	64964	1	+	+	chenhc	Taxid 9606 chrom 9 Primary assembly	2008-08-08 12:38:41.950	14335	60173	GRCh38, GRCh37, Hs36
A	66959	2001	+	+	chenhc	Taxid 9606 chrom 9 Primary assembly	2008-11-11 11:57:06.790	41183	60173
A	66959	2001	+	+	chenhc	Taxid 9606 chrom 9 Primary assembly	2010-05-13 14:14:06.640	77628	60172

Alignment 1 of 2

 AL591214.8 : + : 64965..66959
 AL928802.7 : + : 1..2000
 Mismatches = 3, Gaps = 2, Length = 2000
 Percent identity = 99.85%
 Score = 3892 bits (1963), Expect = 0
  0 BAC and 9 Fosmid bridging clones.
  0 BAC and 9 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL591214.8 >64965  ttttgttattgagatgtgtgaggtccctatatgttctgaatattaaccccttaacagata 65024 
AL928802.7 >1      ............................................................ 60    

AL591214.8 >65025  tgtggtttgcaaatattttctctgtaggttgccttttcattttattgtttcctttgctgt 65084 
AL928802.7 >61     ............................................................ 120   

AL591214.8 >65085  gcagaagctttttagtgtgatctagtcccacttatttattttttattttgttgcctatta 65144 
AL928802.7 >121    ............................................................ 180   

AL591214.8 >65145  ttttggtgtcatattcaaataatcattgacaacaccaatgtcaagaagattgtttctatg 65204 
AL928802.7 >181    ............................................................ 240   

AL591214.8 >65205  ttttcttctaggagtgttacgattctgggttttacatttaaatcattttgagttaatatt 65264 
AL928802.7 >241    ............................................................ 300   

AL591214.8 >65265  tgtgtgtgatgtaagataggggtccatgtggatatccattttctcaataccattcattga 65324 
AL928802.7 >301    ............................................................ 360   

AL591214.8 >65325  agagactgtcgtttctcccattgtgtattcttggcattcttgtcaaagattagttgacca 65384 
AL928802.7 >361    ............................................................ 420   

AL591214.8 >65385  tatatgctggagtttatttatgggatctgtattctgttccatttatctatgtgtctgttt 65444 
AL928802.7 >421    ............................................................ 480   

AL591214.8 >65445  ttatgccagtattatactgttttgattactatagctttataatatagtttcaaataagga 65504 
AL928802.7 >481    ............................................................ 540   

AL591214.8 >65505  aatttggtgtctccagctttgttattcttactcaagacctctttggctatttggagtctt 65564 
AL928802.7 >541    ............................................................ 600   

AL591214.8 >65565  gtggttccatatgaattttttctatatctgtggaaaatgccattgaaactttgatagtga 65624 
AL928802.7 >601    ............................................................ 660   

AL591214.8 >65625  ttgcatttaattcatagatcactttggatagtgtggatattttaacaatattaatcactc 65684 
AL928802.7 >661    ............................................................ 720   

AL591214.8 >65685  caaccc-atgaacatgggatatgttttctttgtctctaaaatttctttcatcattgtctt 65743 
AL928802.7 >721    ......c..................................................... 780   

AL591214.8 >65744  atagttttcagtgtacagatctcttacctacttggttaaacttcttcctacatattttgg 65803 
AL928802.7 >781    ............................................................ 840   

AL591214.8 >65804  attttttatgaaattgtaaatgggattattttcttaatttctttttggatagttggttgt 65863 
AL928802.7 >841    ............................................................ 900   

AL591214.8 >65864  ttgtgtatagaaatgcaacagatttttgtacgttaattttgtatcctacaattttactga 65923 
AL928802.7 >901    ............................................................ 960   

AL591214.8 >65924  attaatttattagttctagccattttctggtggagtcttagggttttccatatataagat 65983 
AL928802.7 >961    ............................................................ 1020  

AL591214.8 >65984  catgtcatctgcaaacataggcagttaacctcttcctttctgatttgggtgccttttatt 66043 
AL928802.7 >1021   ............................................................ 1080  

AL591214.8 >66044  tccttttcctagctctggctaaaacttccagaactgtgttaaatagtaatgaaaattatc 66103 
AL928802.7 >1081   ............................................................ 1140  

AL591214.8 >66104  ctttcttgttcctaacctgagaggaaaaagctttcaacttttcattattgaatatgatgt 66163 
AL928802.7 >1141   ............................................................ 1200  

AL591214.8 >66164  tagttatgagcttgtggcatatggcttttattgtgttgaggcacatttcttctgttcctc 66223 
AL928802.7 >1201   ............................................................ 1260  

AL591214.8 >66224  atttctgagagttttttaaaatcatgaaatgatgttgaattttgctgaatgtcttttctg 66283 
AL928802.7 >1261   ............................................................ 1320  

AL591214.8 >66284  catctattgagatgatcatatggtttttgtccttcattctcttaatgtggtgtatcacat 66343 
AL928802.7 >1321   ............................................................ 1380  

AL591214.8 >66344  ttgttgttggtctgcatatgttgaactatccttatatcccagggaaaaattccacttgat 66403 
AL928802.7 >1381   ............................................................ 1440  

AL591214.8 >66404  cattatgtataatc----cttttttttttttttttttgagacagagtctcgctgtgtcat 66459 
AL928802.7 >1441   ..............ttttt......................................... 1500  

AL591214.8 >66460  ctaggctggagtgcagtggcatgatctcggctcactgcaacatctgcctccagggttcaa 66519 
AL928802.7 >1501   .........................................c.................. 1560  

AL591214.8 >66520  gcagttctttgcctcagcctcccgagtagctgggactataggcgcccactcctacacctg 66579 
AL928802.7 >1561   ............................................................ 1620  

AL591214.8 >66580  gctaatttctgtatttttagtagagatggggtttcaccatcttggtcagactagtcttga 66639 
AL928802.7 >1621   ............................................................ 1680  

AL591214.8 >66640  actcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattataggcgtga 66699 
AL928802.7 >1681   ............................................................ 1740  

AL591214.8 >66700  gccaccatgctcgccctgtatgatccttttaatgtgctttgaaggtggtttgttagtatt 66759 
AL928802.7 >1741   .....................t...................................... 1800  

AL591214.8 >66760  ttcttgaagacttaaaaaatctacactcatcaaaaatagtgacctgtaattatcttttct 66819 
AL928802.7 >1801   ............................................................ 1860  

AL591214.8 >66820  tgtaatgtccttatctggctttggtatgaggataaagctggcaatgtaaaatcagtttag 66879 
AL928802.7 >1861   ............................................................ 1920  

AL591214.8 >66880  aagtgttctcacctcttcaatttttggaagaatttgagaagaactggcaataatccttct 66939 
AL928802.7 >1921   ............................................................ 1980  

AL591214.8 >66940  tcaaatgtttggtagaattc 66959 
AL928802.7 >1981   .................... 2000

Alignment 2 of 2

 AL591214.8 : + : 64965..66959
 AL928802.7 : + : 1..2000
 Mismatches = 3, Gaps = 2, Length = 2000
 Percent identity = 99.85%
 Score = 3892 bits (1963), Expect = 0
  0 BAC and 9 Fosmid bridging clones.
  0 BAC and 9 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL591214.8 >64965  ttttgttattgagatgtgtgaggtccctatatgttctgaatattaaccccttaacagata 65024 
AL928802.7 >1      ............................................................ 60    

AL591214.8 >65025  tgtggtttgcaaatattttctctgtaggttgccttttcattttattgtttcctttgctgt 65084 
AL928802.7 >61     ............................................................ 120   

AL591214.8 >65085  gcagaagctttttagtgtgatctagtcccacttatttattttttattttgttgcctatta 65144 
AL928802.7 >121    ............................................................ 180   

AL591214.8 >65145  ttttggtgtcatattcaaataatcattgacaacaccaatgtcaagaagattgtttctatg 65204 
AL928802.7 >181    ............................................................ 240   

AL591214.8 >65205  ttttcttctaggagtgttacgattctgggttttacatttaaatcattttgagttaatatt 65264 
AL928802.7 >241    ............................................................ 300   

AL591214.8 >65265  tgtgtgtgatgtaagataggggtccatgtggatatccattttctcaataccattcattga 65324 
AL928802.7 >301    ............................................................ 360   

AL591214.8 >65325  agagactgtcgtttctcccattgtgtattcttggcattcttgtcaaagattagttgacca 65384 
AL928802.7 >361    ............................................................ 420   

AL591214.8 >65385  tatatgctggagtttatttatgggatctgtattctgttccatttatctatgtgtctgttt 65444 
AL928802.7 >421    ............................................................ 480   

AL591214.8 >65445  ttatgccagtattatactgttttgattactatagctttataatatagtttcaaataagga 65504 
AL928802.7 >481    ............................................................ 540   

AL591214.8 >65505  aatttggtgtctccagctttgttattcttactcaagacctctttggctatttggagtctt 65564 
AL928802.7 >541    ............................................................ 600   

AL591214.8 >65565  gtggttccatatgaattttttctatatctgtggaaaatgccattgaaactttgatagtga 65624 
AL928802.7 >601    ............................................................ 660   

AL591214.8 >65625  ttgcatttaattcatagatcactttggatagtgtggatattttaacaatattaatcactc 65684 
AL928802.7 >661    ............................................................ 720   

AL591214.8 >65685  caaccc-atgaacatgggatatgttttctttgtctctaaaatttctttcatcattgtctt 65743 
AL928802.7 >721    ......c..................................................... 780   

AL591214.8 >65744  atagttttcagtgtacagatctcttacctacttggttaaacttcttcctacatattttgg 65803 
AL928802.7 >781    ............................................................ 840   

AL591214.8 >65804  attttttatgaaattgtaaatgggattattttcttaatttctttttggatagttggttgt 65863 
AL928802.7 >841    ............................................................ 900   

AL591214.8 >65864  ttgtgtatagaaatgcaacagatttttgtacgttaattttgtatcctacaattttactga 65923 
AL928802.7 >901    ............................................................ 960   

AL591214.8 >65924  attaatttattagttctagccattttctggtggagtcttagggttttccatatataagat 65983 
AL928802.7 >961    ............................................................ 1020  

AL591214.8 >65984  catgtcatctgcaaacataggcagttaacctcttcctttctgatttgggtgccttttatt 66043 
AL928802.7 >1021   ............................................................ 1080  

AL591214.8 >66044  tccttttcctagctctggctaaaacttccagaactgtgttaaatagtaatgaaaattatc 66103 
AL928802.7 >1081   ............................................................ 1140  

AL591214.8 >66104  ctttcttgttcctaacctgagaggaaaaagctttcaacttttcattattgaatatgatgt 66163 
AL928802.7 >1141   ............................................................ 1200  

AL591214.8 >66164  tagttatgagcttgtggcatatggcttttattgtgttgaggcacatttcttctgttcctc 66223 
AL928802.7 >1201   ............................................................ 1260  

AL591214.8 >66224  atttctgagagttttttaaaatcatgaaatgatgttgaattttgctgaatgtcttttctg 66283 
AL928802.7 >1261   ............................................................ 1320  

AL591214.8 >66284  catctattgagatgatcatatggtttttgtccttcattctcttaatgtggtgtatcacat 66343 
AL928802.7 >1321   ............................................................ 1380  

AL591214.8 >66344  ttgttgttggtctgcatatgttgaactatccttatatcccagggaaaaattccacttgat 66403 
AL928802.7 >1381   ............................................................ 1440  

AL591214.8 >66404  cattatgtataatc----cttttttttttttttttttgagacagagtctcgctgtgtcat 66459 
AL928802.7 >1441   ..............ttttt......................................... 1500  

AL591214.8 >66460  ctaggctggagtgcagtggcatgatctcggctcactgcaacatctgcctccagggttcaa 66519 
AL928802.7 >1501   .........................................c.................. 1560  

AL591214.8 >66520  gcagttctttgcctcagcctcccgagtagctgggactataggcgcccactcctacacctg 66579 
AL928802.7 >1561   ............................................................ 1620  

AL591214.8 >66580  gctaatttctgtatttttagtagagatggggtttcaccatcttggtcagactagtcttga 66639 
AL928802.7 >1621   ............................................................ 1680  

AL591214.8 >66640  actcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattataggcgtga 66699 
AL928802.7 >1681   ............................................................ 1740  

AL591214.8 >66700  gccaccatgctcgccctgtatgatccttttaatgtgctttgaaggtggtttgttagtatt 66759 
AL928802.7 >1741   .....................t...................................... 1800  

AL591214.8 >66760  ttcttgaagacttaaaaaatctacactcatcaaaaatagtgacctgtaattatcttttct 66819 
AL928802.7 >1801   ............................................................ 1860  

AL591214.8 >66820  tgtaatgtccttatctggctttggtatgaggataaagctggcaatgtaaaatcagtttag 66879 
AL928802.7 >1861   ............................................................ 1920  

AL591214.8 >66880  aagtgttctcacctcttcaatttttggaagaatttgagaagaactggcaataatccttct 66939 
AL928802.7 >1921   ............................................................ 1980  

AL591214.8 >66940  tcaaatgtttggtagaattc 66959 
AL928802.7 >1981   .................... 2000

Events

Id	Type	Date	Whodid	Comment
94615	InitHasAlign	08/30/2006 12:54:16	jcherry	find_overlaps run without blast filtering (-F F)
94616	ReRunFndOvlp	10/02/2006 00:26:58	jcherry	blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F F bandwidths: 501 701 1001 5001 Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730 Running blast for AL591214.8 and AL928802.7 Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F F
125092	CreateSwitchPt	08/08/2008 12:38:41	chenhc	From Hs build 36.1 agp files
151940	CreateSwitchPt	11/11/2008 11:57:06	chenhc	contig_builder 1.3 Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib
209577	CreateSwitchPt	05/13/2010 14:14:06	chenhc	tpf_m_Builder 1.43 Toolkit wrapper version: built Apr 27 2010 using /netopt/ncbi_tools64/c++.by-date/20100426/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH17-116L20	AL591214.8	98.18%	pos 56139 (R-)
CH17-84C22	AL591214.8	99.25%	pos 1967 (R-)
CTD-2166G2				AL591214.8	99.74%	pos 16562 (F-)
CTD-2166G2				AL591214.8	100%	pos 16497 (F-)
CTD-2379F3				AL928802.7	98.63%	pos 6697 (F-)
CTD-2517I22	AL928802.7	99.64%	pos 25133 (R+)
CTD-3245H5				AL591214.8	99.58%	pos 6395 (F-)
RP11-126J21	AL591214.8	100%	pos 6402 (R-)
RP11-780K21				AL591214.8	98.88%	pos 1231 (F-)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
ABC10-44093100A19	AL591214.8	99.69%	pos 8929 (R-)
ABC10-44117700B18	AL591214.8	99.86%	pos 53450 (R-)
ABC10-44136900P3	AL591214.8	100%	pos 49919 (R-)	AL591214.8	99.16%	pos 6039 (F+)
ABC10-44372500B14	AL928802.7	98.67%	pos 18804 (R+)
ABC10-44462100C23	AL591214.8	99.14%	pos 11332 (R-)
ABC10-44462100F16	AL591214.8	98.88%	pos 53448 (R-)
ABC10-44462100N1	AL591214.8	98.8%	pos 7537 (R+)	AL591214.8	97.87%	pos 47913 (F-)
ABC10-44464800A22	AL928802.7	99.84%	pos 8544 (R-)	AL591214.8	99.64%	pos 31625 (F+)
ABC10-44469900N8	AL928802.7	99.32%	pos 2925 (R-)	AL591214.8	97.61%	pos 24982 (F+)
ABC10-44518900O14				AL928802.7	99.72%	pos 4540 (F-)
ABC10-44565800N1	AL591214.8	99.52%	pos 7693 (R-)
ABC10-44585000I22	AL591214.8	99.62%	pos 7092 (R-)
ABC10-44616300O7				AL591214.8	99.69%	pos 49698 (F-)
ABC10-44658800C12	AL928802.7	99.48%	pos 20770 (R+)
ABC10-44659600C11	AL591214.8	99.83%	pos 24796 (R-)
ABC10-45514900K4	AL928802.7	99.86%	pos 21968 (R+)
ABC10-45519900G8	AL591214.8	99.23%	pos 7316 (R+)	AL591214.8	99.47%	pos 47892 (F-)
ABC10-45522000P12				AL591214.8	99.55%	pos 4534 (F-)
ABC10-45524600P7	AL591214.8	99.85%	pos 49906 (R-)	AL591214.8	99.87%	pos 6020 (F+)
ABC10-45528500E7				AL928802.7	100%	pos 12956 (F+)
ABC10-45531300E1				AL591214.8	99.52%	pos 44653 (F-)
ABC10-46302000O3				AL591214.8	99.15%	pos 13626 (F+)
ABC10-46309000F24	AL928802.7	98.94%	pos 10773 (R+)
ABC10-46312100J15	AL591214.8	99.86%	pos 9189 (R-)
ABC10-48935200L5	AL591214.8	99.2%	pos 9109 (R-)
ABC11-47141600L2				AL591214.8	99.1%	pos 7808 (F-)
ABC11-47177600E24	AL591214.8	99.45%	pos 47954 (R-)	AL591214.8	99.72%	pos 7818 (F+)
ABC11-47323200E4	AL591214.8	99.85%	pos 60605 (R-)	AL591214.8	99.73%	pos 19355 (F+)
ABC11-48012600C20	AL591214.8	99.5%	pos 9565 (R-)
ABC11-48013900K5	AL591214.8	98.74%	pos 19301 (R-)
ABC11-48198400J16				AL591214.8	99.03%	pos 23562 (F-)
ABC11-48294800A13	AL591214.8	100%	pos 57525 (R-)	AL591214.8	99.22%	pos 17128 (F+)
ABC11-48295100B1	AL591214.8	98.82%	pos 49356 (R-)
ABC11-48321200J2	AL928802.7	99.29%	pos 24042 (R+)
ABC11-48400900F13	AL591214.8	100%	pos 45031 (R-)
ABC11-49339800J13	AL591214.8	98.41%	pos 45031 (R-)
ABC11-49390100K8				AL591214.8	99.34%	pos 16890 (F+)
ABC11-49531500J23	AL591214.8	99.04%	pos 58530 (R-)	AL591214.8	98.37%	pos 18034 (F+)
ABC11-49597800C17				AL591214.8	99.73%	pos 30657 (F+)
ABC11-49615200J14	AL591214.8	99.6%	pos 37538 (R-)
ABC12-46317000O16	AL591214.8	99.8%	pos 28485 (R-)
ABC12-46664500A13				AL928802.7	99.21%	pos 14838 (F+)
ABC12-46668900E23				AL591214.8	98.95%	pos 42473 (F-)
ABC12-46673900C9	AL591214.8	99.73%	pos 45832 (R-)	AL591214.8	99.51%	pos 6567 (F+)
ABC12-46849000F14				AL591214.8	98.08%	pos 1090 (F-)
ABC12-46852300N23	AL591214.8	99.76%	pos 7705 (R-)
ABC12-46976900J20	AL591214.8	98.39%	pos 28474 (R-)
ABC12-47030700D21	AL591214.8	98.65%	pos 25997 (R+)	AL591214.8	98.63%	pos 63686 (F-)
ABC12-49044400C18				AL591214.8	99.01%	pos 16931 (F+)
ABC12-49056400O17				AL591214.8	99.49%	pos 16907 (F+)
ABC12-49063400E12	AL591214.8	98.39%	pos 60329 (R-)
ABC12-49073400K9				AL591214.8	99.72%	pos 31684 (F-)
ABC12-49077800J21	AL928802.7	99.46%	pos 24113 (R+)
ABC12-49080500L11	AL591214.8	98.74%	pos 41820 (R-)	AL591214.8	99.72%	pos 7103 (F+)
ABC12-49116200H10	AL591214.8	99.41%	pos 32244 (R-)
ABC12-49244300F2	AL928802.7	99.59%	pos 22944 (R+)
ABC12-49283000F20	AL591214.8	99.5%	pos 29244 (R-)
ABC13-1854470G7				AL928802.7	99.24%	pos 23051 (F+)
ABC13-47490200N1	AL928802.7	99.71%	pos 22667 (R+)
ABC13-47496000B9	AL928802.7	99.61%	pos 7420 (R-)
ABC13-47619500A3	AL591214.8	99.87%	pos 44610 (R-)	AL591214.8	99.42%	pos 5218 (F+)
ABC13-47671900I18				AL928802.7	99.87%	pos 16448 (F+)
ABC13-47671900O6				AL928802.7	98.68%	pos 13205 (F+)
ABC13-48050200H17	AL591214.8	99.03%	pos 31807 (R-)
ABC13-48057900C17	AL591214.8	99.83%	pos 65124 (R-)	AL591214.8	99.64%	pos 26491 (F+)
ABC13-48607300M24	AL591214.8	99.43%	pos 17889 (R-)
ABC13-48609500H8	AL928802.7	99.49%	pos 22669 (R+)
ABC13-48611200A16	AL928802.7	99.4%	pos 19803 (R+)
ABC13-48643800C14				AL928802.7	99.33%	pos 9768 (F+)
ABC13-48646600I1				AL591214.8	98.77%	pos 20116 (F+)
ABC13-48646800F21	AL591214.8	99.73%	pos 40314 (R-)
ABC13-48698900F9				AL591214.8	99.62%	pos 34520 (F-)
ABC13-48830100G15	AL591214.8	99.38%	pos 1463 (R-)
ABC13-48855700K16				AL591214.8	99.47%	pos 25822 (F-)
ABC13-48857100C10	AL591214.8	99.69%	pos 13137 (R+)	AL591214.8	99.65%	pos 51590 (F-)
ABC13-49699700J7	AL928802.7	98.57%	pos 13206 (R+)
ABC13-49746100P2	AL591214.8	99.86%	pos 65125 (R-)
ABC13-49767600N21				AL591214.8	99.87%	pos 26486 (F+)
ABC14-1035014F22				AL928802.7	100%	pos 12438 (F+)
ABC14-1079922I24				AL928802.7	98.41%	pos 10596 (F+)
ABC14-1109522L13				AL928802.7	99.88%	pos 26025 (F+)
ABC14-1109922H2				AL928802.7	99.66%	pos 26055 (F+)
ABC14-50095700P23				AL591214.8	97.92%	pos 26422 (F-)
ABC14-50103100H1	AL591214.8	99.72%	pos 19056 (R+)
ABC14-50116100O16	AL591214.8	99.58%	pos 47039 (R-)	AL591214.8	99.7%	pos 6199 (F+)
ABC14-50121100J17	AL591214.8	99.71%	pos 19047 (R+)
ABC14-50124100G2	AL591214.8	99.82%	pos 19915 (R+)	AL591214.8	100%	pos 59109 (F-)
ABC14-50148900P19				AL591214.8	100%	pos 27187 (F-)
ABC14-50173400K11				AL591214.8	100%	pos 21449 (F-)
ABC14-50183800P8	AL591214.8	99.84%	pos 50432 (R-)
ABC14-50190100L2				AL591214.8	100%	pos 6969 (F-)
ABC14-50197300P19				AL591214.8	99.54%	pos 14588 (F-)
ABC14-50471000G21				AL591214.8	99.6%	pos 27170 (F+)
ABC14-50471100F13				AL591214.8	99.78%	pos 27193 (F+)
ABC14-50926800N19	AL591214.8	99.84%	pos 13729 (R+)
ABC14-50931100M6				AL591214.8	100%	pos 47826 (F-)
ABC14-50975100I8	AL591214.8	99.87%	pos 13725 (R+)
ABC14-948014A11	AL928802.7	99.84%	pos 14080 (R+)
ABC14-955814F9				AL591214.8	99.35%	pos 9125 (F-)
ABC14-972314P23				AL591214.8	99.84%	pos 28323 (F-)
ABC14-974114O1				AL591214.8	100%	pos 47824 (F-)
ABC7-40602200A17	AL591214.8	100%	pos 22897 (R-)
ABC7-40628900P21	AL591214.8	100%	pos 47930 (R-)	AL591214.8	99.32%	pos 9711 (F+)
ABC7-40639600L11	AL591214.8	99.83%	pos 2599 (R+)	AL591214.8	100%	pos 38909 (F-)
ABC7-40647600L1	AL928802.7	100%	pos 22178 (R+)
ABC7-40656100C18	AL591214.8	99.26%	pos 11554 (R-)
ABC7-42060500A7				AL928802.7	99.6%	pos 15335 (F+)
ABC7-42363500P15	AL591214.8	99.65%	pos 23322 (R+)	AL591214.8	99.1%	pos 58205 (F-)
ABC7-42365700I8	AL591214.8	99.13%	pos 11870 (R+)	AL591214.8	99.48%	pos 49781 (F-)
ABC7-42366700K15				AL591214.8	98.86%	pos 9108 (F-)
ABC7-42379800K17				AL928802.7	100%	pos 17989 (F+)
ABC7-42408600O8	AL591214.8	98.92%	pos 32239 (R+)	AL928802.7	99.37%	pos 4295 (F-)
ABC7-42419500C1	AL928802.7	99.86%	pos 3595 (R-)	AL591214.8	100%	pos 30663 (F+)
ABC7-42426600J11	AL591214.8	99.57%	pos 31627 (R-)
ABC7-42518600B2	AL928802.7	99.13%	pos 8193 (R-)	AL591214.8	98.65%	pos 35795 (F+)
ABC7-43062400I16	AL928802.7	99.62%	pos 23046 (R+)
ABC7-43064000I17				AL591214.8	100%	pos 18912 (F-)
ABC7-496522G10				AL591214.8	99.04%	pos 7958 (F-)
ABC7-497122J22	AL928802.7	99.85%	pos 2163 (R-)	AL591214.8	99.59%	pos 26559 (F+)
ABC8-2116440A18				AL591214.8	100%	pos 21768 (F-)
ABC8-2162740L13	AL591214.8	99.59%	pos 15765 (R-)
ABC8-2622240L14				AL928802.7	98.93%	pos 9902 (F+)
ABC8-40298400N24				AL591214.8	98.76%	pos 26004 (F-)
ABC8-40960600L3	AL591214.8	100%	pos 21361 (R+)
ABC8-40960900C4	AL928802.7	99.87%	pos 14601 (R+)
ABC8-41052000I14	AL591214.8	99.74%	pos 21512 (R+)	AL591214.8	99.23%	pos 56303 (F-)
ABC8-41088800E4				AL591214.8	100%	pos 12132 (F-)
ABC8-41133200F4	AL591214.8	99.85%	pos 37350 (R-)	AL591214.8	99.86%	pos 493 (F+)
ABC8-41138000K13	AL591214.8	98.62%	pos 56168 (R-)	AL591214.8	97.52%	pos 16515 (F+)
ABC8-41159700B16				AL928802.7	99.85%	pos 1099 (F-)
ABC8-41188700H4	AL591214.8	99.19%	pos 6531 (R+)	AL591214.8	99.86%	pos 39987 (F-)
ABC8-41198000J11				AL591214.8	100%	pos 37969 (F+)
ABC8-41203800I19				AL591214.8	99.61%	pos 1226 (F-)
ABC8-41216600O19	AL928802.7	99.69%	pos 7476 (R-)	AL591214.8	99.28%	pos 37023 (F+)
ABC8-41230600F10	AL928802.7	98.91%	pos 18108 (R+)
ABC8-41790400J17	AL591214.8	99.18%	pos 18765 (R+)
ABC8-41793100I18				AL591214.8	100%	pos 21584 (F-)
ABC8-42076500A17	AL591214.8	100%	pos 20923 (R+)	AL591214.8	100%	pos 49742 (F-)
ABC8-42975500O8	AL591214.8	98.66%	pos 13324 (R-)
ABC8-42991700H2	AL591214.8	100%	pos 15554 (R+)
ABC8-43023700P8	AL591214.8	99.59%	pos 24619 (R-)
ABC8-43036500J7				AL928802.7	98.76%	pos 18815 (F+)
ABC8-43214000E9	AL591214.8	100%	pos 20958 (R+)	AL591214.8	100%	pos 49734 (F-)
ABC8-43757900A6	AL591214.8	98.8%	pos 49702 (R-)	AL591214.8	99.34%	pos 11611 (F+)
ABC8-43783700A18				AL591214.8	99.06%	pos 16521 (F-)
ABC8-5697649H13	AL591214.8	100%	pos 4954 (R-)
ABC8-755722P6	AL928802.7	99.44%	pos 11185 (R+)
ABC9-41250300I5	AL591214.8	97.99%	pos 6154 (R+)	AL591214.8	99.71%	pos 45700 (F-)
ABC9-41257500C11	AL591214.8	99.85%	pos 30527 (R-)
ABC9-43351000G19				AL591214.8	99.39%	pos 24554 (F-)
ABC9-43830800B12	AL591214.8	99.23%	pos 17928 (R-)
ABC9-43837600J12				AL591214.8	99.08%	pos 2959 (F-)
ABC9-43841600O10				AL591214.8	99.86%	pos 45708 (F-)
ABC9-43862400N1	AL591214.8	100%	pos 2066 (R-)
ABC9-43865500I11	AL591214.8	99.86%	pos 6002 (R+)
ABC9-43871900I18	AL591214.8	98.23%	pos 2053 (R-)
ABC9-43907300H4	AL591214.8	100%	pos 49971 (R-)	AL591214.8	99.86%	pos 13682 (F+)
ABC9-43909800L5				AL591214.8	100%	pos 1359 (F+)
ABC9-43940300B4				AL591214.8	99.73%	pos 24546 (F-)
ABC9-43943900C21	AL591214.8	100%	pos 62386 (R-)	AL591214.8	99.52%	pos 20240 (F+)
ABC9-43945200O4	AL591214.8	99.85%	pos 24772 (R-)
ABC9-43947000H12	AL591214.8	99.32%	pos 11661 (R-)
ABC9-43972600L14	AL591214.8	99.52%	pos 23664 (R-)
ABC9-43986100N8	AL928802.7	99.74%	pos 5258 (R-)
ABC9-43992000I3				AL591214.8	99.17%	pos 24555 (F-)
ABC9-44023600L6	AL591214.8	99.86%	pos 24770 (R-)
ABC9-44042500H16	AL591214.8	98.58%	pos 24744 (R-)
ABC9-44044900K7	AL928802.7	98.75%	pos 19161 (R+)
ABC9-45470800E12	AL928802.7	99.65%	pos 5248 (R-)	AL591214.8	99.84%	pos 32062 (F+)
ABC9-45923300D15				AL591214.8	99.71%	pos 2956 (F-)
G248P80244E8	AL591214.8	99.41%	pos 51753 (R-)	AL591214.8	99.58%	pos 8994 (F+)
G248P8595C12				AL591214.8	99.34%	pos 65265 (F-)
G248P89765D6	AL591214.8	99.39%	pos 29619 (R+)
G248P89856F2				AL928802.7	99.68%	pos 24281 (F+)
WI2-0491P22	AL928802.7	99.6%	pos 10299 (R+)
WI2-0501F09	AL591214.8	100%	pos 725 (R+)
WI2-0929I04	AL591214.8	99.84%	pos 25603 (R-)
WI2-1380C11	AL591214.8	99.51%	pos 60997 (R-)	AL591214.8	99.75%	pos 25294 (F+)
WI2-1395E01	AL591214.8	100%	pos 8595 (R-)
WI2-1572L04	AL591214.8	100%	pos 18611 (R+)	AL591214.8	100%	pos 58915 (F-)
WI2-1624J04	AL591214.8	100%	pos 19435 (R-)
WI2-1891M12				AL591214.8	99.15%	pos 26232 (F+)
WI2-2157I20	AL591214.8	99.84%	pos 39372 (R-)
WI2-2638F13	AL591214.8	99.71%	pos 25824 (R+)	AL591214.8	99.64%	pos 62829 (F-)
WI2-2644J20				AL928802.7	98%	pos 20427 (F+)
WI2-2962P01	AL591214.8	99.5%	pos 24217 (R-)
WI2-3140A13	AL591214.8	99.68%	pos 24218 (R-)
WI2-3203K11	AL591214.8	99.81%	pos 22247 (R+)	AL591214.8	98.5%	pos 63738 (F-)
WI2-3381G06	AL591214.8	100%	pos 10536 (R-)
WI2-3593K04	AL591214.8	99.48%	pos 61264 (R-)	AL591214.8	100%	pos 21355 (F+)
WI2-3621P14				AL928802.7	99.69%	pos 24281 (F+)
WI2-3663I10	AL591214.8	99.84%	pos 46810 (R-)	AL591214.8	99.84%	pos 4218 (F+)
WI2-3671J04	AL928802.7	99.82%	pos 1834 (R-)
WI2-3714N16	AL928802.7	99.33%	pos 2677 (R-)	AL591214.8	99.46%	pos 28485 (F+)
WI2-3773B02	AL591214.8	99.65%	pos 2518 (R+)	AL591214.8	98.95%	pos 44006 (F-)

Repeats

acc	start	stop	repeat id	strand	name	family	class
AL591214.8	12833	13544	10235186	+	L1MA9		L1
AL591214.8	13545	14264	10235186	+	L1MA9		L1
AL591214.8	14366	14617	10235183	+	L1MEf		L1
AL591214.8	14618	14926	10235188	+	AluSx	Alu	SINE
AL591214.8	14927	15152	10235183	+	L1MEf		L1
AL591214.8	15174	16056	10235183	+	L1MEf		L1
AL591214.8	16066	16245	10235183	+	L1MEf		L1
AL591214.8	16246	16620	10235189	+	MLT2A1	ERVL	LTR
AL591214.8	16621	16644	10235190	+	(TC)n
AL591214.8	16645	16691	10235191	+	(CA)n		Simple_repeat
AL591214.8	16692	16738	10235189	+	MLT2A1	ERVL	LTR
AL591214.8	16739	16802	10235183	+	L1MEf		L1
AL591214.8	16803	17100	10235192	+	AluSx	Alu	SINE
AL591214.8	17103	17151	10235193	+	MSTA	ERVL-MaLR	LTR
AL591214.8	17154	17535	10235194	-	MER77	ERVL	LTR
AL591214.8	17594	17810	10235195	+	L1MD3		L1
AL591214.8	18125	18423	10235196	+	AluSx	Alu	SINE
AL591214.8	18426	18824	10235197	-	L2	L2	LINE
AL591214.8	19733	19766	10235198	+	T-rich
AL591214.8	19767	20077	10235199	-	AluY	Alu	SINE
AL591214.8	20078	20092	10235200	+	T-rich
AL591214.8	21835	22122	10235201	+	AluSx	Alu	SINE
AL591214.8	22134	22204	10235202	+	MER113A	hAT-Charlie	DNA
AL591214.8	23765	23825	10235203	+	AT_rich		Low_complexity
AL591214.8	23803	23827	10235204	+	AT_rich		Low_complexity
AL591214.8	23883	24084	10235205	-	MER58A	hAT-Charlie	DNA
AL591214.8	24085	24116	10235206	+	AT_rich		Low_complexity
AL591214.8	24812	24856	10235207	+	(TG)n
AL591214.8	24961	25088	10235208	+	L1PB3		L1
AL591214.8	25107	25130	10235209	+	AT_rich		Low_complexity
AL591214.8	25152	25435	10235210	+	L3	CR1	LINE
AL591214.8	25823	26009	10235210	+	L3	CR1	LINE
AL591214.8	26778	26920	10235211	+	MIRc	MIR	SINE
AL591214.8	12538	12832	10235187	+	AluSx	Alu	SINE
AL591214.8	12177	12537	10235186	+	L1MA9		L1
AL591214.8	11576	12179	10235183	+	L1MEf		L1
AL591214.8	11255	11575	10235185	-	AluY	Alu	SINE
AL591214.8	10916	11254	10235183	+	L1MEf		L1
AL591214.8	10541	10850	10235184	-	AluY	Alu	SINE
AL591214.8	9674	10086	10235183	+	L1MEf		L1
AL591214.8	9186	9339	10235182	-	MIRb	MIR	SINE
AL591214.8	8688	8708	10235181	+	(T)n
AL591214.8	6663	6771	10235180	+	PRIMA4-int	ERV1	LTR
AL591214.8	5914	6032	10235179	-	MER5A	hAT-Charlie	DNA
AL591214.8	5465	5572	10235177	+	LTR78	ERV1	LTR
AL591214.8	5129	5183	10235178	-	MIR	MIR	SINE
AL591214.8	4483	4649	10235177	+	LTR78	ERV1	LTR
AL591214.8	3956	4417	10235176	-	MLT1G3	ERVL-MaLR	LTR
AL591214.8	3634	3901	10235175	-	LTR50	ERVL	LTR
AL591214.8	2892	3534	10235174	+	L1MC4		L1
AL591214.8	2276	2880	10235174	+	L1MC4		L1
AL591214.8	2039	2168	10235172	+	MLT1B	ERVL-MaLR	LTR
AL591214.8	1645	2038	10235173	-	MLT1A1	ERVL-MaLR	LTR
AL591214.8	1454	1644	10235172	+	MLT1B	ERVL-MaLR	LTR
AL591214.8	778	1241	10235171	-	MLT1H1	ERVL-MaLR	LTR
AL591214.8	96	304	10235170	+	LTR50	ERVL	LTR
AL591214.8	1	29	10235169	+	(CA)n		Simple_repeat
AL591214.8	27073	27144	10235212	-	MIRb	MIR	SINE
AL591214.8	27867	28179	10235213	-	AluY	Alu	SINE
AL591214.8	28731	29021	10235214	-	AluSx	Alu	SINE
AL591214.8	29090	29381	10235215	-	AluSx	Alu	SINE
AL591214.8	29559	29589	10235216	+	(TG)n
AL591214.8	29745	30218	10235217	-	L1ME4a		L1
AL591214.8	30744	31072	10235218	-	L1MD2		L1
AL591214.8	31187	31559	10235218	-	L1MD2		L1
AL591214.8	31560	31856	10235219	+	AluSx	Alu	SINE
AL591214.8	31857	32262	10235218	-	L1MD2		L1
AL591214.8	32266	33257	10235220	-	L1PA8		L1
AL591214.8	33239	36076	10235220	-	L1PA8		L1
AL591214.8	36077	36240	10235218	-	L1MD2		L1
AL591214.8	36241	36299	10235221	+	(CTATT)n		Simple_repeat
AL591214.8	36300	37527	10235218	-	L1MD2		L1
AL591214.8	37528	37548	10235222	+	(TTTG)n
AL591214.8	37549	38184	10235218	-	L1MD2		L1
AL591214.8	38185	38489	10235223	-	AluSx	Alu	SINE
AL591214.8	38490	38685	10235218	-	L1MD2		L1
AL591214.8	38721	39372	10235218	-	L1MD2		L1
AL591214.8	40890	41274	10235224	+	MLT1B	ERVL-MaLR	LTR
AL591214.8	42043	42145	10235225	+	L2a		L2
AL591214.8	42450	42758	10235226	-	AluY	Alu	SINE
AL591214.8	44664	44688	10235227	+	AT_rich		Low_complexity
AL591214.8	44667	44691	10235228	+	AT_rich		Low_complexity
AL591214.8	44704	44828	10235229	+	(TA)n		Simple_repeat
AL591214.8	44851	45027	10235230	+	MIRb	MIR	SINE
AL591214.8	45079	45183	10235231	-	L2b		L2
AL591214.8	45432	45618	10235232	-	MLT1E1A	ERVL-MaLR	LTR
AL591214.8	45665	45904	10235233	-	MLT1F2	ERVL-MaLR	LTR
AL591214.8	46515	46550	10235234	+	AT_rich		Low_complexity
AL591214.8	46589	46898	10235235	-	AluSx	Alu	SINE
AL591214.8	47037	47294	10235236	+	L1M5		L1
AL591214.8	47295	47561	10235237	+	AluY	Alu	SINE
AL591214.8	47562	47925	10235236	+	L1M5		L1
AL591214.8	47936	48446	10235238	+	Ricksha	MULE-MuDR	DNA
AL591214.8	48447	48504	10235239	+	(TCTA)n
AL591214.8	48505	48546	10235238	+	Ricksha	MULE-MuDR	DNA
AL591214.8	48605	48918	10235240	+	AluSx	Alu	SINE
AL591214.8	49269	49731	10235241	-	Tigger3b	TcMar-Tigger	DNA
AL591214.8	49732	50018	10235242	+	AluSx	Alu	SINE
AL591214.8	50019	50483	10235241	-	Tigger3b	TcMar-Tigger	DNA
AL591214.8	50484	50781	10235243	+	AluY	Alu	SINE
AL591214.8	50782	51067	10235241	-	Tigger3b	TcMar-Tigger	DNA
AL591214.8	51193	51469	10235244	-	L1ME1		L1
AL591214.8	52066	52165	10235245	-	L1ME3Cz		L1
AL591214.8	52166	52463	10235246	-	AluSx	Alu	SINE
AL591214.8	52464	52699	10235245	-	L1ME3Cz		L1
AL591214.8	52730	53000	10235247	+	Tigger3b	TcMar-Tigger	DNA
AL591214.8	53002	53165	10235245	-	L1ME3Cz		L1
AL591214.8	53167	53270	10235248	-	L2a		L2
AL591214.8	53271	53780	10235249	-	MER89	ERV1	LTR
AL591214.8	53782	53807	10235250	+	AT_rich		Low_complexity
AL591214.8	53812	53972	10235251	-	AluJb	Alu	SINE
AL591214.8	53973	54008	10235249	-	MER89	ERV1	LTR
AL591214.8	54037	54394	10235252	+	THE1D	ERVL-MaLR	LTR
AL591214.8	54403	54666	10235248	-	L2a		L2
AL591214.8	54674	54903	10235245	-	L1ME3Cz		L1
AL591214.8	55097	55123	10235253	-	LTR105_Mam	ERVL	LTR
AL591214.8	55124	55434	10235254	+	AluSx	Alu	SINE
AL591214.8	55435	55597	10235253	-	LTR105_Mam	ERVL	LTR
AL591214.8	55592	55701	10235255	+	MLT1B	ERVL-MaLR	LTR
AL591214.8	55713	55827	10235256	+	L1MEj		L1
AL591214.8	55996	56309	10235257	+	L2	L2	LINE
AL591214.8	56890	57037	10235258	-	MLT1G1	ERVL-MaLR	LTR
AL591214.8	57187	57255	10235259	-	L1PA11		L1
AL591214.8	57295	57768	10235260	+	MER1A	hAT-Charlie	DNA
AL591214.8	57797	58027	10235261	-	L1ME2		L1
AL591214.8	58028	58209	10235262	+	(TG)n
AL591214.8	58210	58528	10235261	-	L1ME2		L1
AL591214.8	59213	59521	10235263	-	AluSx	Alu	SINE
AL591214.8	59599	59640	10235264	+	AT_rich		Low_complexity
AL591214.8	60431	60527	10235265	+	MIRb	MIR	SINE
AL591214.8	60578	60878	10235266	+	MER21A	ERVL	LTR
AL591214.8	60712	60928	10235267	+	MER39	ERV1	LTR
AL591214.8	60946	60983	10235268	+	MLT1E2	ERVL-MaLR	LTR
AL591214.8	61050	61143	10235269	+	L1M4		L1
AL591214.8	61144	61315	10235270	+	MER21A	ERVL	LTR
AL591214.8	61316	61355	10235271	+	MER39	ERV1	LTR
AL591214.8	61356	61551	10235272	-	AluY	Alu	SINE
AL591214.8	61552	61763	10235271	+	MER39	ERV1	LTR
AL591214.8	61764	62340	10235270	+	MER21A	ERVL	LTR
AL591214.8	62373	62667	10235273	+	AluSx	Alu	SINE
AL591214.8	63245	63742	10235274	-	L1MA9		L1
AL591214.8	63743	64041	10235275	-	AluJb	Alu	SINE
AL591214.8	64042	64054	10235274	-	L1MA9		L1
AL591214.8	64055	64363	10235276	-	AluY	Alu	SINE
AL591214.8	64364	64690	10235274	-	L1MA9		L1
AL591214.8	64767	66418	10235274	-	L1MA9		L1
AL591214.8	66419	66715	10235277	-	AluSx	Alu	SINE
AL591214.8	66716	66959	10235274	-	L1MA9		L1
AL591214.8	1	29	104285928	N	DUST
AL591214.8	2095	2103	104285929	N	DUST
AL591214.8	3127	3144	104285930	N	DUST
AL591214.8	3565	3571	104285931	N	DUST
AL591214.8	6678	6756	104285932	N	DUST
AL591214.8	6802	6810	104285933	N	DUST
AL591214.8	7044	7050	104285934	N	DUST
AL591214.8	8688	8708	104285935	N	DUST
AL591214.8	10117	10133	104285936	N	DUST
AL591214.8	10505	10570	104285937	N	DUST
AL591214.8	10718	10724	104285938	N	DUST
AL591214.8	11252	11306	104285939	N	DUST
AL591214.8	12457	12463	104285940	N	DUST
AL591214.8	12817	12832	104285941	N	DUST
AL591214.8	13197	13203	104285942	N	DUST
AL591214.8	13579	13596	104285943	N	DUST
AL591214.8	14277	14340	104285944	N	DUST
AL591214.8	14382	14389	104285945	N	DUST
AL591214.8	14415	14422	104285946	N	DUST
AL591214.8	14429	14435	104285947	N	DUST
AL591214.8	14445	14451	104285948	N	DUST
AL591214.8	14897	14983	104285949	N	DUST
AL591214.8	15334	15340	104285950	N	DUST
AL591214.8	16037	16043	104285951	N	DUST
AL591214.8	16134	16151	104285952	N	DUST
AL591214.8	16621	16702	104285953	N	DUST
AL591214.8	16931	16939	104285954	N	DUST
AL591214.8	17776	17815	104285955	N	DUST
AL591214.8	18408	18423	104285956	N	DUST
AL591214.8	18990	19002	104285957	N	DUST
AL591214.8	19733	19795	104285958	N	DUST
AL591214.8	22117	22150	104285959	N	DUST
AL591214.8	23731	23842	104285960	N	DUST
AL591214.8	24085	24106	104285961	N	DUST
AL591214.8	24816	24856	104285962	N	DUST
AL591214.8	24891	24953	104285963	N	DUST
AL591214.8	25069	25145	104285964	N	DUST
AL591214.8	27379	27390	104285965	N	DUST
AL591214.8	27637	27668	104285966	N	DUST
AL591214.8	27863	27898	104285967	N	DUST
AL591214.8	28735	28744	104285968	N	DUST
AL591214.8	28903	28909	104285969	N	DUST
AL591214.8	29090	29101	104285970	N	DUST
AL591214.8	29249	29263	104285971	N	DUST
AL591214.8	29559	29589	104285972	N	DUST
AL591214.8	30173	30233	104285973	N	DUST
AL591214.8	31833	31856	104285974	N	DUST
AL591214.8	32247	32287	104285975	N	DUST
AL591214.8	32410	32480	104285976	N	DUST
AL591214.8	33032	33038	104285977	N	DUST
AL591214.8	33118	33124	104285978	N	DUST
AL591214.8	33641	33661	104285979	N	DUST
AL591214.8	33820	33828	104285980	N	DUST
AL591214.8	34034	34092	104285981	N	DUST
AL591214.8	34118	34126	104285982	N	DUST
AL591214.8	35016	35085	104285983	N	DUST
AL591214.8	35499	35505	104285984	N	DUST
AL591214.8	36145	36155	104285985	N	DUST
AL591214.8	36231	36299	104285986	N	DUST
AL591214.8	36531	36596	104285987	N	DUST
AL591214.8	36908	36915	104285988	N	DUST
AL591214.8	37528	37568	104285989	N	DUST
AL591214.8	37609	37666	104285990	N	DUST
AL591214.8	38093	38099	104285991	N	DUST
AL591214.8	38179	38208	104285992	N	DUST
AL591214.8	38610	38616	104285993	N	DUST
AL591214.8	39094	39112	104285994	N	DUST
AL591214.8	39450	39457	104285995	N	DUST
AL591214.8	39733	39742	104285996	N	DUST
AL591214.8	42432	42477	104285997	N	DUST
AL591214.8	42627	42633	104285998	N	DUST
AL591214.8	44660	44809	104285999	N	DUST
AL591214.8	45927	45955	104286000	N	DUST
AL591214.8	46540	46617	104286001	N	DUST
AL591214.8	47567	47573	104286002	N	DUST
AL591214.8	47818	47827	104286003	N	DUST
AL591214.8	48002	48059	104286004	N	DUST
AL591214.8	48452	48506	104286005	N	DUST
AL591214.8	48870	48877	104286006	N	DUST
AL591214.8	48889	48918	104286007	N	DUST
AL591214.8	50147	50227	104286008	N	DUST
AL591214.8	50241	50252	104286009	N	DUST
AL591214.8	50430	50436	104286010	N	DUST
AL591214.8	50770	50781	104286011	N	DUST
AL591214.8	52166	52177	104286012	N	DUST
AL591214.8	52806	52813	104286013	N	DUST
AL591214.8	53153	53161	104286014	N	DUST
AL591214.8	53235	53242	104286015	N	DUST
AL591214.8	54472	54490	104286016	N	DUST
AL591214.8	54877	54883	104286017	N	DUST
AL591214.8	55405	55438	104286018	N	DUST
AL591214.8	55740	55800	104286019	N	DUST
AL591214.8	57061	57067	104286020	N	DUST
AL591214.8	57168	57206	104286021	N	DUST
AL591214.8	57686	57692	104286022	N	DUST
AL591214.8	58017	58301	104286023	N	DUST
AL591214.8	58968	59030	104286024	N	DUST
AL591214.8	59210	59242	104286025	N	DUST
AL591214.8	59599	59677	104286026	N	DUST
AL591214.8	59919	59925	104286027	N	DUST
AL591214.8	60663	60681	104286028	N	DUST
AL591214.8	61356	61374	104286029	N	DUST
AL591214.8	62236	62243	104286030	N	DUST
AL591214.8	62302	62324	104286031	N	DUST
AL591214.8	62337	62343	104286032	N	DUST
AL591214.8	62654	62667	104286033	N	DUST
AL591214.8	62950	62961	104286034	N	DUST
AL591214.8	63014	63023	104286035	N	DUST
AL591214.8	64052	64082	104286036	N	DUST
AL591214.8	64692	64698	104286037	N	DUST
AL591214.8	65116	65148	104286038	N	DUST
AL591214.8	66419	66436	104286039	N	DUST
AL928802.7	9383	9561	10628421	+	(TG)n
AL928802.7	9592	9772	10628421	+	(TG)n
AL928802.7	10625	10684	10628422	+	L2a		L2
AL928802.7	11352	11429	10628423	+	(TATATG)n
AL928802.7	11432	11519	10628424	-	L2a		L2
AL928802.7	11838	11949	10628425	+	AT_rich		Low_complexity
AL928802.7	12166	12253	10628426	+	C-rich
AL928802.7	12448	12882	10628427	-	Charlie4a	hAT-Charlie	DNA
AL928802.7	13189	13212	10628428	+	(TTTTG)n
AL928802.7	13452	13619	10628429	+	L1MB7		L1
AL928802.7	13620	13919	10628430	+	AluJb	Alu	SINE
AL928802.7	13920	14446	10628429	+	L1MB7		L1
AL928802.7	14447	15053	10628431	+	LTR12F	ERV1	LTR
AL928802.7	15351	15421	10628432	+	MamRep434	TcMar-Tigger	DNA
AL928802.7	15493	15624	10628433	+	MamRep434	TcMar-Tigger	DNA
AL928802.7	17241	17514	10628434	+	L1ME4b		L1
AL928802.7	18911	19338	10628435	+	MER39	ERV1	LTR
AL928802.7	19346	19646	10628436	+	AluY	Alu	SINE
AL928802.7	23249	23387	10628437	-	L1MC4		L1
AL928802.7	25976	26046	10628438	+	MADE2	TcMar-Mariner	DNA
AL928802.7	26101	26403	10628439	-	AluSx	Alu	SINE
AL928802.7	26420	26639	10628440	-	L1ME3G		L1
AL928802.7	9199	9267	10628420	+	(GTGTG)n
AL928802.7	8857	8960	10628419	+	(GTGTG)n
AL928802.7	8645	8732	10628418	+	(TATG)n
AL928802.7	8485	8616	10628417	+	(CGTG)n
AL928802.7	7658	7708	10628415	+	MER67A	ERV1	LTR
AL928802.7	7352	7657	10628416	+	AluSx	Alu	SINE
AL928802.7	6896	7351	10628415	+	MER67A	ERV1	LTR
AL928802.7	6829	6863	10628414	+	(TTG)n
AL928802.7	6393	6664	10628411	-	L1M5		L1
AL928802.7	6088	6392	10628413	+	AluSx	Alu	SINE
AL928802.7	6050	6087	10628411	-	L1M5		L1
AL928802.7	5761	6049	10628412	-	AluSx	Alu	SINE
AL928802.7	5581	5760	10628411	-	L1M5		L1
AL928802.7	4997	5292	10628410	-	AluY	Alu	SINE
AL928802.7	3733	4970	10628405	-	L1M3a		L1
AL928802.7	3411	3732	10628409	-	MER2	TcMar-Tigger	DNA
AL928802.7	2963	3410	10628405	-	L1M3a		L1
AL928802.7	2942	2957	10628405	-	L1M3a		L1
AL928802.7	2669	2941	10628408	-	AluSx	Alu	SINE
AL928802.7	2358	2668	10628405	-	L1M3a		L1
AL928802.7	2040	2357	10628407	-	AluY	Alu	SINE
AL928802.7	1757	2039	10628405	-	L1M3a		L1
AL928802.7	1455	1756	10628406	-	AluSx	Alu	SINE
AL928802.7	1	1454	10628405	-	L1M3a		L1
AL928802.7	152	184	106862253	N	DUST
AL928802.7	12853	12862	106862278	N	DUST
AL928802.7	13172	13214	106862279	N	DUST
AL928802.7	13738	13759	106862280	N	DUST
AL928802.7	1455	1477	106862254	N	DUST
AL928802.7	2026	2069	106862255	N	DUST
AL928802.7	2219	2231	106862256	N	DUST
AL928802.7	2642	2697	106862257	N	DUST
AL928802.7	3135	3141	106862258	N	DUST
AL928802.7	3211	3225	106862259	N	DUST
AL928802.7	3294	3358	106862260	N	DUST
AL928802.7	4997	5010	106862261	N	DUST
AL928802.7	5160	5166	106862262	N	DUST
AL928802.7	5315	5338	106862263	N	DUST
AL928802.7	23821	23867	106862291	N	DUST
AL928802.7	24068	24077	106862292	N	DUST
AL928802.7	25075	25088	106862293	N	DUST
AL928802.7	26072	26121	106862294	N	DUST
AL928802.7	26457	26463	106862295	N	DUST
AL928802.7	26709	26715	106862296	N	DUST
AL928802.7	26763	26777	106862297	N	DUST
AL928802.7	5761	5768	106862264	N	DUST
AL928802.7	6216	6223	106862265	N	DUST
AL928802.7	6829	6863	106862266	N	DUST
AL928802.7	7640	7657	106862267	N	DUST
AL928802.7	8142	8212	106862268	N	DUST
AL928802.7	8485	9805	106862269	N	DUST
AL928802.7	10298	10307	106862270	N	DUST
AL928802.7	10950	10967	106862271	N	DUST
AL928802.7	11352	11429	106862272	N	DUST
AL928802.7	11615	11627	106862273	N	DUST
AL928802.7	11810	11949	106862274	N	DUST
AL928802.7	12021	12039	106862275	N	DUST
AL928802.7	12163	12259	106862276	N	DUST
AL928802.7	12514	12589	106862277	N	DUST
AL928802.7	14123	14131	106862281	N	DUST
AL928802.7	14136	14145	106862282	N	DUST
AL928802.7	14774	14780	106862283	N	DUST
AL928802.7	15666	15722	106862284	N	DUST
AL928802.7	16162	16168	106862285	N	DUST
AL928802.7	16262	16273	106862286	N	DUST
AL928802.7	16579	16590	106862287	N	DUST
AL928802.7	19618	19653	106862288	N	DUST
AL928802.7	20646	20652	106862289	N	DUST
AL928802.7	23090	23103	106862290	N	DUST

Join Legend

Curator Links

Alignments for AL591214.8 and AL928802.7

Alignment Summary

Alignment 1 of 2

Alignment 2 of 2