Alignment last updated: 11/20/2008 16:51:05

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AC142452.5 and AC127334.3

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AC142452.5 Mus musculus BAC clone RP24-266E20 from 3, complete sequence [htgs_phase3]

Length: 149,936 bp

AC127334.3 Mus musculus BAC clone RP23-137P16 from chromosome 3, complete sequence [htgs_phase3]

Length: 180,760 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 15382
Total Length: 5266
Aligned Length: 5266
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	149936	5267	+	+	chenhc	Taxid 10090 chrom 3 Primary assembly	2008-11-20 16:51:05.253	56845	15382	GRCm39, GRCm38, MGSCv37

Alignment 1 of 1

 AC142452.5 : + : 144671..149936
 AC127334.3 : + : 1..5266
 Mismatches = 0, Gaps = 0, Length = 5266
 Percent identity = 100%
 Score = 1.044e+04 bits (5266), Expect = 0
  2 BAC and 7 Fosmid bridging clones.
  2 BAC and 7 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC142452.5 >144671  gaattcttggttccagactaggctacttctcaaatcttgttggagaaaatggcttggcta 144730 
AC127334.3 >1       ............................................................ 60     

AC142452.5 >144731  ttttcaaatgaccctgaattattcctggggtttgttgaagtggtgaagacaccgtgattc 144790 
AC127334.3 >61      ............................................................ 120    

AC142452.5 >144791  tttcccttcatggaacgatgccaaatgacactacaaaacctctacagttatatttaatat 144850 
AC127334.3 >121     ............................................................ 180    

AC142452.5 >144851  aatctaaaattatacttaagcattactaggtatgcggatgtctcagaggcacaaatgtca 144910 
AC127334.3 >181     ............................................................ 240    

AC142452.5 >144911  tctttctctggaagaacattctagtcgtgaagagagaatactataaattctgcaacttta 144970 
AC127334.3 >241     ............................................................ 300    

AC142452.5 >144971  attcctagttctcattaattttcttttaaaaagagatccgcccccaaagacaatttggaa 145030 
AC127334.3 >301     ............................................................ 360    

AC142452.5 >145031  ggcaatattttcataagcttactggatatgacataattcattatccccaatgttacaact 145090 
AC127334.3 >361     ............................................................ 420    

AC142452.5 >145091  attctgttagcagatttatattctaagaaaagggcaaatccctatccatatgtttctgat 145150 
AC127334.3 >421     ............................................................ 480    

AC142452.5 >145151  ctttagaagcctaagattaaaaatgattttagttaagaaaatactaaagacccataagaa 145210 
AC127334.3 >481     ............................................................ 540    

AC142452.5 >145211  ttgtgggagaattttactcattttatctgccaaggttatttagaaatatcctctatcctg 145270 
AC127334.3 >541     ............................................................ 600    

AC142452.5 >145271  gtattgttactaccataaattacaaaatacacgtgagtgaatagaaaggtgataaaatgg 145330 
AC127334.3 >601     ............................................................ 660    

AC142452.5 >145331  tttccaaaaagtttgtggttcaaaatgtatttatattttataaatagcacaggtatcaga 145390 
AC127334.3 >661     ............................................................ 720    

AC142452.5 >145391  tgaaatgttcccacaaggtgaatatgtctgtaatccatgagctaaaccaacactggagtg 145450 
AC127334.3 >721     ............................................................ 780    

AC142452.5 >145451  atggaagtggctgttatcaccagcatagaatcagtactaaccacatgtctttgaaccaaa 145510 
AC127334.3 >781     ............................................................ 840    

AC142452.5 >145511  cattcagtcctttattttactcatgtgcaacagaggatcattacaaatatcttgccaaat 145570 
AC127334.3 >841     ............................................................ 900    

AC142452.5 >145571  gagtggtttaacttgattctgtcatgatctaatcataggatcctctatgtttgccccttg 145630 
AC127334.3 >901     ............................................................ 960    

AC142452.5 >145631  ataaagtatattttaatatagtggaataaagatctctattagtttttatgttgctgtgat 145690 
AC127334.3 >961     ............................................................ 1020   

AC142452.5 >145691  gtaatatatgaagaaaccaaggtaaaaaaccaaaaaaaccccaggatgtatggtgtacag 145750 
AC127334.3 >1021    ............................................................ 1080   

AC142452.5 >145751  gtgcagtccatcgtggcaggcaaggcatgtgaggtagctggtcacactgcatatgctgtc 145810 
AC127334.3 >1081    ............................................................ 1140   

AC142452.5 >145811  aggaagcagacagaaggtttgttcttaagttccttccttggcttctctcggtgatggact 145870 
AC127334.3 >1141    ............................................................ 1200   

AC142452.5 >145871  gtaacatttaagtctaacaaacttctttatccccagcttgcttttcctcgtagcgtttac 145930 
AC127334.3 >1201    ............................................................ 1260   

AC142452.5 >145931  catagcaacagaaaagtacctacattcatgtggtgccctacgtcgtggaatgatgccagc 145990 
AC127334.3 >1261    ............................................................ 1320   

AC142452.5 >145991  tacgttcagtataaccctcccttttctgttaaacctccaaggagccatcttcacagagat 146050 
AC127334.3 >1321    ............................................................ 1380   

AC142452.5 >146051  gcttagaggtttgtattccaggcaatcccaaagcccatcaagtagctgacccagactgac 146110 
AC127334.3 >1381    ............................................................ 1440   

AC142452.5 >146111  tcacacgttcccttaatgtaagacttgacatccaaacaaataacttttgaactctaatta 146170 
AC127334.3 >1441    ............................................................ 1500   

AC142452.5 >146171  tccatttcagatcttccaaaagctattgctcatctcataatgcaaaattggtttattctt 146230 
AC127334.3 >1501    ............................................................ 1560   

AC142452.5 >146231  taaagtcctgaaagctttaccagtcccaagacagttcaaaaacgtaagtgcagtttcttc 146290 
AC127334.3 >1561    ............................................................ 1620   

AC142452.5 >146291  tgagtctcaggaatctcttagctgtgagcccctgtcaagaagacaatttatgtactgata 146350 
AC127334.3 >1621    ............................................................ 1680   

AC142452.5 >146351  acatacagctggcaggagttagcatgcccatgctcaaaggaggaacataggcataacaga 146410 
AC127334.3 >1681    ............................................................ 1740   

AC142452.5 >146411  gagacattcagtgaagacaagaaccaattctgcagctcatggggctcatgataggattgc 146470 
AC127334.3 >1741    ............................................................ 1800   

AC142452.5 >146471  tcaggttccaacagccttgaggagcctcactacttcagccctacaacctgtagacatgtg 146530 
AC127334.3 >1801    ............................................................ 1860   

AC142452.5 >146531  tgtgacctctctcttgagctggatccactttcctaggtaaatttcccatggccctgggat 146590 
AC127334.3 >1861    ............................................................ 1920   

AC142452.5 >146591  ttctaacagcctggtgtctctgttttctcttaggctatgtttctccagctctgtgcaatt 146650 
AC127334.3 >1921    ............................................................ 1980   

AC142452.5 >146651  gtctcccagggcctgcttgcagaaaatgcaaccttgctctgcatcgttggagctcagtgg 146710 
AC127334.3 >1981    ............................................................ 2040   

AC142452.5 >146711  ctttctgggacttgaatgcaaacctctaaaactccctcatgcttgcattcttcatggctg 146770 
AC127334.3 >2041    ............................................................ 2100   

AC142452.5 >146771  caaaataagtactacatgaataatactgccaagttctgatgctggcttgagatgtggtct 146830 
AC127334.3 >2101    ............................................................ 2160   

AC142452.5 >146831  gtacttcttggactacagctaaagtggacattctgtgccttcaagggtaacacgtctctt 146890 
AC127334.3 >2161    ............................................................ 2220   

AC142452.5 >146891  ggtggccattctggagtagggcagtagagttaggttctcacccatcgaaagtaacgtatc 146950 
AC127334.3 >2221    ............................................................ 2280   

AC142452.5 >146951  ttaaacctgctttagaagagttctgtatgcagagtcacatttagatttagggctgagctg 147010 
AC127334.3 >2281    ............................................................ 2340   

AC142452.5 >147011  gatgtgattgttggcaattactcacttctaagcttccttctgctttgccctagattgcag 147070 
AC127334.3 >2341    ............................................................ 2400   

AC142452.5 >147071  gagtcagagacctgggaattgaatgtagaattctggatgtcgctgatggtctatcagaaa 147130 
AC127334.3 >2401    ............................................................ 2460   

AC142452.5 >147131  gatgtgcttgcctttggaggagaaaggagctttccccttgagcagcagtggtggctactt 147190 
AC127334.3 >2461    ............................................................ 2520   

AC142452.5 >147191  gatgtcctaggcagtcctagtgcttcacattgcagtgtgtcatctgtttgggggctgctg 147250 
AC127334.3 >2521    ............................................................ 2580   

AC142452.5 >147251  agtacctatggcactgacggcactttcctggagatgtcttaacttctggatggcagcaat 147310 
AC127334.3 >2581    ............................................................ 2640   

AC142452.5 >147311  ggcagcttcatgatctcagaattagagtcgcagaattgtgcctggaagtcttgagccctg 147370 
AC127334.3 >2641    ............................................................ 2700   

AC142452.5 >147371  acttcatttctgtaacctttatgattatgttgtaggcctggagttttatatactcagtac 147430 
AC127334.3 >2701    ............................................................ 2760   

AC142452.5 >147431  ctttgactgatatactttatgaggttctcttttttattatttatttatttattttattag 147490 
AC127334.3 >2761    ............................................................ 2820   

AC142452.5 >147491  atatttttttatatacatttcaaatgctatcccgaaagttccctataccctccctccgcc 147550 
AC127334.3 >2821    ............................................................ 2880   

AC142452.5 >147551  ctgctcccctacccacccactcccacttcttggccctggcattcccctgtactgggcata 147610 
AC127334.3 >2881    ............................................................ 2940   

AC142452.5 >147611  taaagtttgcaagaccaaggggcctctcttcccagtgatggtcgactaggccatcttctg 147670 
AC127334.3 >2941    ............................................................ 3000   

AC142452.5 >147671  atacatatgcagctagagacacgagatctgggaatactggctagtttatcttgtttttcc 147730 
AC127334.3 >3001    ............................................................ 3060   

AC142452.5 >147731  acttacagggttgcagacctcttcagctccttgggtgctttctctagcttctccattggg 147790 
AC127334.3 >3061    ............................................................ 3120   

AC142452.5 >147791  tgccctgtgttccatcctatagctgactgtgagcatccacttctttatttgccaggcact 147850 
AC127334.3 >3121    ............................................................ 3180   

AC142452.5 >147851  ggcatagcctcatacaagacagctataacagggtcccttcagcaaaatctttctggcata 147910 
AC127334.3 >3181    ............................................................ 3240   

AC142452.5 >147911  tgcaatagtgtctgggtttggtggctgattatgggatggatccccaggtagggtagtctc 147970 
AC127334.3 >3241    ............................................................ 3300   

AC142452.5 >147971  tggatagtccatcctttcgtcttagctccaaactttgtctctgtaatgcctttcatgggt 148030 
AC127334.3 >3301    ............................................................ 3360   

AC142452.5 >148031  attttgttccctattctaaggaggaatgatgtatccacccatttgtcttccctcttcttg 148090 
AC127334.3 >3361    ............................................................ 3420   

AC142452.5 >148091  attttcttgtgttttgcaaattgtatcttgggtgttctatgtttctgggctaatgtccac 148150 
AC127334.3 >3421    ............................................................ 3480   

AC142452.5 >148151  ttatcagtgagtgcatatctaataacttcttttgtgattgggttacctcactaaggatat 148210 
AC127334.3 >3481    ............................................................ 3540   

AC142452.5 >148211  tctccagatacatccatttgtccaagaatttcacaaatccattgtttttaatagctgagt 148270 
AC127334.3 >3541    ............................................................ 3600   

AC142452.5 >148271  agtactccattgtgtaaatgtaccacattttctgtatccattcttctgttgagggacatc 148330 
AC127334.3 >3601    ............................................................ 3660   

AC142452.5 >148331  tgggttctttccagcttctggctattataaataaggctgctatgaacatagtggagcatg 148390 
AC127334.3 >3661    ............................................................ 3720   

AC142452.5 >148391  tgttgttattaccagttggaacttcttctgggtatatgcccaggagaggtattgctggat 148450 
AC127334.3 >3721    ............................................................ 3780   

AC142452.5 >148451  cttccggtagtaaaaaagttattttgcctgttttgtttttggtttttgtttttttcgaga 148510 
AC127334.3 >3781    ............................................................ 3840   

AC142452.5 >148511  cagggtttctctgtatcgccctggatgtcctggaactcactttgtagaccaggctggcct 148570 
AC127334.3 >3841    ............................................................ 3900   

AC142452.5 >148571  caaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcatgtgccac 148630 
AC127334.3 >3901    ............................................................ 3960   

AC142452.5 >148631  cgcccggctccttctgaggttctcaactttgactgatgtaagtcctgttttgttaaggga 148690 
AC127334.3 >3961    ............................................................ 4020   

AC142452.5 >148691  gaaaggccagttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtt 148750 
AC127334.3 >4021    ............................................................ 4080   

AC142452.5 >148751  tgttatgttatctcaatgaatgttccagaaagaattatcctcttaataaactataagttt 148810 
AC127334.3 >4081    ............................................................ 4140   

AC142452.5 >148811  aagaaaacaacattattaggtggggcatggtggctcaggcctttaatcccagcattaggg 148870 
AC127334.3 >4141    ............................................................ 4200   

AC142452.5 >148871  ggacagaggctggcagatttctgtgagttcaaggccagcctggtctacatagtgagttct 148930 
AC127334.3 >4201    ............................................................ 4260   

AC142452.5 >148931  agaacagttagtgctatatggtgattgcctgtcttaaaacaaaacaaaacaaaacacctc 148990 
AC127334.3 >4261    ............................................................ 4320   

AC142452.5 >148991  ccaatcaaataaacaaataaaatttcaaaaacccaaacaaacaggaacaaaacaagcatt 149050 
AC127334.3 >4321    ............................................................ 4380   

AC142452.5 >149051  attcataatctcttctgctaagaggtaccttagaattgggaccttcagcacagttctggc 149110 
AC127334.3 >4381    ............................................................ 4440   

AC142452.5 >149111  tgacgattgtcttctgacctagcctccagccatgattagtttttatcaatctgacacaaa 149170 
AC127334.3 >4441    ............................................................ 4500   

AC142452.5 >149171  tctagacataagaggtaatcttgctcagttgaggaattgcctccttcagatagtcctgtg 149230 
AC127334.3 >4501    ............................................................ 4560   

AC142452.5 >149231  ggacattttcttcatatctaattgatgtaggagggtttagcccactgtgggcagtgtcat 149290 
AC127334.3 >4561    ............................................................ 4620   

AC142452.5 >149291  cccttagtagctctgggctatataagaaaggtagcagaggaagcagtggagaacaaaccg 149350 
AC127334.3 >4621    ............................................................ 4680   

AC142452.5 >149351  gtgagcactgtgtatgcacagttcctgtctccaggttcctgccccaagctcctgtcatga 149410 
AC127334.3 >4681    ............................................................ 4740   

AC142452.5 >149411  cttccctttgtagtcaactgtaacccagaagcaaaaaaataaaacagtaagagcaagaac 149470 
AC127334.3 >4741    ............................................................ 4800   

AC142452.5 >149471  atcatcaacaacactaccctttcttctatcaagaggcttttgggcatggtgtttatcagt 149530 
AC127334.3 >4801    ............................................................ 4860   

AC142452.5 >149531  gcaacaaagaagctaactagagcacaccctccttaccacactgaatgtttaagttactgt 149590 
AC127334.3 >4861    ............................................................ 4920   

AC142452.5 >149591  ctccctcttttacatgggtcctccatgttttagagggaatgaaaatgaaatcctgtcttg 149650 
AC127334.3 >4921    ............................................................ 4980   

AC142452.5 >149651  agtagcaaagctcagtgaattaaacatgagcttcaaaagactaaagtttggacctcccct 149710 
AC127334.3 >4981    ............................................................ 5040   

AC142452.5 >149711  ttaccttgtaaaagcaaagcaaagcgaagcgaagcgaagcaaagcaaagcaaagcaaagc 149770 
AC127334.3 >5041    ............................................................ 5100   

AC142452.5 >149771  aaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagc 149830 
AC127334.3 >5101    ............................................................ 5160   

AC142452.5 >149831  aaagcaaaagcaaagcaacaaaaaccggtgttctaacccattaagctctacagccagagc 149890 
AC127334.3 >5161    ............................................................ 5220   

AC142452.5 >149891  ttctgtagagctttttatccacatgtgtgagttctaatgcaagatc 149936 
AC127334.3 >5221    .............................................. 5266

Events

Id	Type	Date	Whodid	Comment
23173	ImportOldDb	09/04/2005 13:40:00	f_old_db
23174	ReSetShortOvlp	09/04/2008 10:31:48	dbo
167602	CreateSwitchPt	11/20/2008 16:51:05	chenhc	tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
C3H-186P14	AC127334.3	99.13%	pos 148200 (R+)
C3H-47A22	AC127334.3	99.23%	pos 10072 (R+)
C3H-51F13	AC142452.5	99.11%	pos 28247 (R-)
CH29-145L12				AC127334.3	100%	pos 20329 (F-)
CH29-173H7				AC142452.5	99.32%	pos 126579 (F-)
CH29-185L21				AC127334.3	99.74%	pos 23862 (F-)
CH29-527D5	AC142452.5	99.21%	pos 126592 (R-)
CH29-579H5	AC142452.5	99.33%	pos 37302 (R+)
RP23-137K13	AC142452.5	99.58%	pos 126667 (R-)
RP24-127I20				AC142452.5	99.25%	pos 106169 (F-)
RP24-139L12	AC127334.3	99.84%	pos 41541 (R-)	AC142452.5	99.19%	pos 149191 (F+)
RP24-139L12				AC127334.3	99.19%	pos 4521 (F+)
RP24-271P4				AC127334.3	99.63%	pos 131444 (F-)
RP24-286M6	AC142452.5	99.09%	pos 98941 (R+)
RP24-304A2				AC127334.3	99.62%	pos 178906 (F+)
RP24-365G23	AC142452.5	99.82%	pos 24673 (R-)
RP24-368N8	AC142452.5	99.07%	pos 42979 (R+)	AC127334.3	99.84%	pos 42194 (F-)
RP24-398F2				AC127334.3	99.21%	pos 63727 (F+)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
WI1-103O15	AC142452.5	99.85%	pos 55984 (R-)	AC142452.5	100%	pos 17513 (F+)
WI1-1069C1	AC127334.3	100%	pos 66425 (R+)	AC127334.3	99.71%	pos 105279 (F-)
WI1-1125I10	AC127334.3	100%	pos 178555 (R-)	AC127334.3	100%	pos 140582 (F+)
WI1-1216H7	AC142452.5	100%	pos 55984 (R-)
WI1-1222C1	AC127334.3	100%	pos 154268 (R-)	AC127334.3	99.39%	pos 118435 (F+)
WI1-1269A18	AC127334.3	99.69%	pos 139304 (R+)	AC127334.3	99.85%	pos 164562 (F-)
WI1-1391C8	AC142452.5	100%	pos 8060 (R-)
WI1-1575M18	AC127334.3	100%	pos 8031 (R-)	AC142452.5	100%	pos 110413 (F+)
WI1-1606N11	AC127334.3	100%	pos 7834 (R-)	AC142452.5	99.22%	pos 110424 (F+)
WI1-1702E2	AC127334.3	100%	pos 66314 (R-)	AC127334.3	100%	pos 27360 (F+)
WI1-1741O8	AC142452.5	100%	pos 55624 (R-)
WI1-1751J15	AC142452.5	100%	pos 17609 (R+)	AC142452.5	100%	pos 58937 (F-)
WI1-1892M20				AC142452.5	100%	pos 50423 (F-)
WI1-1906C1	AC142452.5	99.48%	pos 124841 (R-)
WI1-1938N9	AC127334.3	100%	pos 17677 (R+)	AC127334.3	100%	pos 56060 (F-)
WI1-1981F11				AC127334.3	99.39%	pos 135895 (F+)
WI1-1987M19	AC127334.3	100%	pos 18940 (R-)	AC142452.5	100%	pos 121892 (F+)
WI1-199M17				AC127334.3	99.83%	pos 176813 (F-)
WI1-204J19	AC127334.3	100%	pos 150408 (R-)	AC127334.3	100%	pos 112491 (F+)
WI1-2071F1	AC142452.5	100%	pos 136060 (R-)	AC142452.5	99.82%	pos 98099 (F+)
WI1-2071L21	AC142452.5	100%	pos 136060 (R-)	AC142452.5	100%	pos 98099 (F+)
WI1-2084L5	AC142452.5	99.06%	pos 17231 (R-)
WI1-2116P21				AC142452.5	100%	pos 25694 (F-)
WI1-2132N9	AC127334.3	99.83%	pos 176670 (R-)	AC127334.3	99.53%	pos 133393 (F+)
WI1-2141G17	AC127334.3	99.8%	pos 128936 (R-)	AC127334.3	99.33%	pos 95952 (F+)
WI1-2141J6	AC127334.3	100%	pos 128936 (R-)	AC127334.3	99.59%	pos 95939 (F+)
WI1-2155C11	AC127334.3	99.85%	pos 161896 (R+)
WI1-2167E11	AC142452.5	100%	pos 17144 (R+)	AC142452.5	99.65%	pos 56442 (F-)
WI1-2196H21	AC127334.3	100%	pos 84199 (R+)	AC127334.3	99.46%	pos 117967 (F-)
WI1-2314F10	AC127334.3	99.65%	pos 83263 (R-)	AC127334.3	100%	pos 46062 (F+)
WI1-2388I5	AC142452.5	100%	pos 110009 (R+)	AC142452.5	99.75%	pos 149934 (F-)
WI1-2388I5				AC127334.3	99.75%	pos 5264 (F-)
WI1-2401D21	AC127334.3	100%	pos 107783 (R-)	AC127334.3	100%	pos 67765 (F+)
WI1-2473O16				AC142452.5	100%	pos 25977 (F-)
WI1-2577F16	AC142452.5	100%	pos 2145 (R-)
WI1-2608A22				AC142452.5	100%	pos 144806 (F-)
WI1-2643I16	AC127334.3	100%	pos 66168 (R-)	AC127334.3	100%	pos 28556 (F+)
WI1-2675E15				AC127334.3	99.64%	pos 176622 (F+)
WI1-2816G7	AC127334.3	100%	pos 32295 (R-)	AC142452.5	99.22%	pos 136515 (F+)
WI1-2847A2	AC142452.5	100%	pos 6063 (R-)
WI1-2888C6	AC127334.3	99.7%	pos 43163 (R+)	AC127334.3	99.42%	pos 79985 (F-)
WI1-2912N14	AC142452.5	99.5%	pos 140534 (R+)	AC127334.3	99.83%	pos 29537 (F-)
WI1-315D18				AC127334.3	99.65%	pos 176648 (F+)
WI1-357F12	AC127334.3	100%	pos 20716 (R+)	AC127334.3	100%	pos 60133 (F-)
WI1-387G22				AC127334.3	99.71%	pos 74973 (F-)
WI1-387M2				AC127334.3	100%	pos 74974 (F-)
WI1-398B9	AC127334.3	99.76%	pos 166441 (R-)	AC127334.3	100%	pos 124494 (F+)
WI1-44K15	AC142452.5	99.83%	pos 14652 (R+)	AC142452.5	100%	pos 43361 (F-)
WI1-502G23				AC142452.5	99.68%	pos 17732 (F+)
WI1-539N4	AC127334.3	100%	pos 111235 (R-)	AC127334.3	100%	pos 70343 (F+)
WI1-557F24				AC127334.3	99.82%	pos 172765 (F+)
WI1-560B18				AC142452.5	100%	pos 27540 (F+)
WI1-590F7	AC142452.5	99.65%	pos 54722 (R-)	AC142452.5	99.43%	pos 17419 (F+)
WI1-592K7	AC127334.3	99.86%	pos 23638 (R-)	AC142452.5	100%	pos 123966 (F+)
WI1-613F11	AC127334.3	99.47%	pos 139948 (R+)
WI1-796F2				AC142452.5	99.64%	pos 17097 (F-)
WI1-807N17				AC142452.5	99.86%	pos 14067 (F-)
WI1-80M12	AC127334.3	100%	pos 59779 (R-)	AC127334.3	100%	pos 17001 (F+)
WI1-822K2				AC127334.3	99.3%	pos 108702 (F-)
WI1-890D13				AC127334.3	99.75%	pos 51605 (F+)
WI1-8C14	AC127334.3	99.8%	pos 10016 (R+)	AC127334.3	100%	pos 52063 (F-)
WI1-900K2				AC127334.3	100%	pos 166389 (F+)
WI1-941G5				AC142452.5	100%	pos 23448 (F-)
WI1-964H1	AC127334.3	100%	pos 87244 (R-)	AC127334.3	100%	pos 53854 (F+)

Repeats

Too repeats, not showing repeat table.

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Curator Links

Alignment for AC142452.5 and AC127334.3

Alignment Summary

Alignment 1 of 1