Alignment last updated: 11/11/2008 11:57:39
Alignment for AC009021.8 and AC130466.2
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AC009021.8 Homo sapiens chromosome 16 clone RP11-105C19, complete sequence [htgs_phase3]
Length: 176,219 bp
AC130466.2 Homo sapiens chromosome 16 clone CTC-591M7, complete sequence [htgs_phase3]
Length: 106,998 bp
Alignment Summary
Join evaluation: Alignment count: 1
|
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time | Id | Alignment | Releases |
L | 1 | 102107 | - | - | chenhc | Taxid 9606 chrom 16 Primary assembly | 2008-08-08 12:39:07.670 | 20534 | 57910 | GRCh38, GRCh37, Hs36 |
A | 1 | 102107 | - | - | chenhc | Taxid 9606 chrom 16 Primary assembly | 2008-11-11 11:57:39.006 | 46666 | 57910 |
Alignment 1 of 1
AC009021.8 : - : 4891..1 AC130466.2 : - : 106998..102108 Mismatches = 5, Gaps = 0, Length = 4891 Percent identity = 99.9% Score = 9657 bits (4871), Expect = 0 3 BAC and 34 Fosmid bridging clones. 3 BAC and 34 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AC009021.8 <4891 aagcttcagtggaagactttctgtaggggcagggagtgtagttacagggtttttccaggg 4832 AC130466.2 <106998 ............................................................ 106939 AC009021.8 <4831 ctttgcacctggaaaagaggtatgtcttgcagaccagaagaagaaactgggaaagaactc 4772 AC130466.2 <106938 ............................................................ 106879 AC009021.8 <4771 aaaggttcattcagggctgggctcaggttctcttgttatgtacagtgaggatgtctagca 4712 AC130466.2 <106878 ............................................................ 106819 AC009021.8 <4711 agatggtccttggtgagggaaggagagtctgagttgcaccaacctctgtggtccagagac 4652 AC130466.2 <106818 ............................................................ 106759 AC009021.8 <4651 tatcttgttgtgtcaagacagtgtgtgaaatgctataaggcttaagagttctgggagcaa 4592 AC130466.2 <106758 ............................................................ 106699 AC009021.8 <4591 gctaactgtggcaggattatacactttacttgtttagctagagtgtttttctaatttttc 4532 AC130466.2 <106698 ............................................................ 106639 AC009021.8 <4531 gggggagtaggggtgggagtttcttagtgtttgcttctcttttgttctctcttagcactt 4472 AC130466.2 <106638 ............................................................ 106579 AC009021.8 <4471 ggcaatttgaatatcccagctagcttagctctgctacagggctggggtggttatatccat 4412 AC130466.2 <106578 ............................................................ 106519 AC009021.8 <4411 gttggagcaaagctttaaaaggcagcatgattttttttgagattagaggtgaaattcttt 4352 AC130466.2 <106518 ............................................................ 106459 AC009021.8 <4351 aattcttcctttcttccttccatccatccccatccatccatccatccatccatccatttg 4292 AC130466.2 <106458 ............................................................ 106399 AC009021.8 <4291 tgtacccatttgatagcccatttatccttgcattcatccatccatttacccatttaataa 4232 AC130466.2 <106398 ............................................................ 106339 AC009021.8 <4231 cccattcgtccattcattattgcattcatccatccatttgctcatccttttatttaccca 4172 AC130466.2 <106338 ............................................................ 106279 AC009021.8 <4171 tacatttagccaacaaatatctctgagcacctgctgtgggccaggcactgttctaggcat 4112 AC130466.2 <106278 ............................................................ 106219 AC009021.8 <4111 tggagatacagcaacgaacaaaacagagacttgctcttaaggagcatacttcctagtggt 4052 AC130466.2 <106218 ............................................................ 106159 AC009021.8 <4051 aaaagataaatgacaaacaaatgcagtatgtagtataccaggtggtgacaagtgctttgg 3992 AC130466.2 <106158 ............................................................ 106099 AC009021.8 <3991 aaactataaatcagggaagggaaatagggagtgttaggggtgagcaattagaaaaggaat 3932 AC130466.2 <106098 ............................................................ 106039 AC009021.8 <3931 ttgagaggacaaaaccatggccacagattctagcagttcttccctaccaagagactttta 3872 AC130466.2 <106038 ............................................................ 105979 AC009021.8 <3871 agaacatgtgatattaacctagcgacctcctgaggcttattacattatagaaacagaggc 3812 AC130466.2 <105978 ............................................................ 105919 AC009021.8 <3811 agctcaatggcaggtggttgcccatgcacagagtcatttagcttgtgcacgcatacttga 3752 AC130466.2 <105918 ............................................................ 105859 AC009021.8 <3751 agaggacatctgccatttttgtctgtctagcatcaatcctaattcctgtaactacactct 3692 AC130466.2 <105858 ............................................................ 105799 AC009021.8 <3691 ggtttttcccttggggagccaatctgctccctttctcatggaccttcgtttagagggggc 3632 AC130466.2 <105798 ............................................................ 105739 AC009021.8 <3631 tgatctccctcccaagctttataatgaacatgtgacccaggattggctcagtaggttcat 3572 AC130466.2 <105738 ............................................................ 105679 AC009021.8 <3571 ttttcctggccacgtggatggtttcaggcattacctgaccatgtaaatctaaggagaatt 3512 AC130466.2 <105678 ............................................................ 105619 AC009021.8 <3511 cccctggactttgatgggagccagtgaagaggaggatctctcttttttgatggttataaa 3452 AC130466.2 <105618 ......................g..................................... 105559 AC009021.8 <3451 tatattataatgaaatgagatataatttaaacatctacaactgccagtggccacctttgc 3392 AC130466.2 <105558 ............................................................ 105499 AC009021.8 <3391 acctagggaagaggctacctgagaatgaagccagcacaaaggtgacctgggagatggaaa 3332 AC130466.2 <105498 ............................................................ 105439 AC009021.8 <3331 gagattaaatcttggatcatctgagcctggtccacctgtccctagaccatcagctttgtg 3272 AC130466.2 <105438 ............................................................ 105379 AC009021.8 <3271 agccaataattttttcgataaacttatgtcatttttgtttataacttttaagttcaagga 3212 AC130466.2 <105378 ............................................................ 105319 AC009021.8 <3211 tacaagtgcaggtttgttaacaggtaaacttgggccatgggggtttgtggtacagattat 3152 AC130466.2 <105318 ............................................................ 105259 AC009021.8 <3151 ttcatcacccaggtattaagcctggtacccattagttatttttcctgatcctctccctcc 3092 AC130466.2 <105258 ............................................................ 105199 AC009021.8 <3091 ttccactctccactttccaaaaaaccccagcatgtgttgctcccctctatgtgtccatgt 3032 AC130466.2 <105198 ............................................................ 105139 AC009021.8 <3031 gttctcatcatttagctcccacttgtaggtgagaacatgcagtatttggttttccattcc 2972 AC130466.2 <105138 ............................................................ 105079 AC009021.8 <2971 tgtgttagtttgctaaagataatagccttcagcttgatgcatgtccctgcaaaggttata 2912 AC130466.2 <105078 ............................................................ 105019 AC009021.8 <2911 atcttgttcttttttatggctgcatagtattccatgatgtatatgtaccacattttcttt 2852 AC130466.2 <105018 ............................................................ 104959 AC009021.8 <2851 atccagtttattattgatgggcatttaggttgattcattgtctttgctattgcgaatagc 2792 AC130466.2 <104958 ............................................................ 104899 AC009021.8 <2791 gctgcaatgaacatatcattgcatgtgtctttatagcagaatgttttatgttcctctggg 2732 AC130466.2 <104898 ............................................................ 104839 AC009021.8 <2731 tatgtacctagtaatgggattgctgggttgaatggtatttctgtctttaggtctttgagg 2672 AC130466.2 <104838 ............................................................ 104779 AC009021.8 <2671 aattgccacactgtcttctacaaactaacttacactcccaccaactgaactaacttacac 2612 AC130466.2 <104778 ............................................................ 104719 AC009021.8 <2611 tcccaccaactgtgtgtaagtgttcctttttctccacatggaggactgatgctctacctc 2552 AC130466.2 <104718 ............................................................ 104659 AC009021.8 <2551 accagcatctgtcattttttgactctttaatactagccattctgactggtattagacggt 2492 AC130466.2 <104658 ............................................................ 104599 AC009021.8 <2491 gtctcattgtagttttgatttacatttctctaatgatcagggatgttgggcttttattca 2432 AC130466.2 <104598 ............................................................ 104539 AC009021.8 <2431 aatgactgttggctgcatatatgtcttcttttgaaaagtgtcccaagaatcctgattaac 2372 AC130466.2 <104538 ............................................................ 104479 AC009021.8 <2371 atggtgctcagtgaatacttattgaatggataacatcagaactttgctggaaggaatctt 2312 AC130466.2 <104478 ............................................................ 104419 AC009021.8 <2311 aagaaattggaattctgctccctttgtccctatatttcacattgagaagttcaatgtgac 2252 AC130466.2 <104418 ............................................................ 104359 AC009021.8 <2251 ctctaaggtgacatcaactggctcttcgcaggtacctttaaaaagaagtttcatttatgt 2192 AC130466.2 <104358 ............................................................ 104299 AC009021.8 <2191 tcagaatcatgatgcataggaattagacatgccttctaagtatgtttaggtatgatttca 2132 AC130466.2 <104298 ............................................................ 104239 AC009021.8 <2131 gtgtatttcaaaagtaatacatgctcaatacagaaaacagaaaagcgcaaagaagaaaat 2072 AC130466.2 <104238 ............................................................ 104179 AC009021.8 <2071 aaaaattatgtatctatccagcccctaaataacttggcacaccaagtttttgctttgcat 2012 AC130466.2 <104178 ............................................................ 104119 AC009021.8 <2011 ccatgtttttaaaataaaatttagaatatactcaataaatctgtatttaaatctgtattt 1952 AC130466.2 <104118 ............................................................ 104059 AC009021.8 <1951 attttcactgaaaatatatttttactattttccatgccagtgattactctcccataacaa 1892 AC130466.2 <104058 ............................................................ 103999 AC009021.8 <1891 catatttgaccacaatctggaaagaatttaaagttctagaaaagtgcaaagaacaactta 1832 AC130466.2 <103998 ............................................................ 103939 AC009021.8 <1831 atagacatctatactcccaccctgtgctgttaacaactattaatattttattatgttcac 1772 AC130466.2 <103938 ............................................................ 103879 AC009021.8 <1771 tttcagtcatttttcaaagggaaaacagtacataggtagctaacgtctcctaccagtgag 1712 AC130466.2 <103878 ............................................................ 103819 AC009021.8 <1711 tctttatttatttttcacagttgtaaaggcactctgaagaatatcattattgagcctgta 1652 AC130466.2 <103818 ............................................................ 103759 AC009021.8 <1651 cacaatacaaaattatacgacctttgtgtacatccaccactccctcagggtgaagtcttg 1592 AC130466.2 <103758 ............................................................ 103699 AC009021.8 <1591 gaaatggtggaactgccagatcagtgggtgaatttgtactcctgcctgccataaatgata 1532 AC130466.2 <103698 ............................................................ 103639 AC009021.8 <1531 actcccttgtccctatattctagccaacactggctcattctaattcacttcaaaaaaaag 1472 AC130466.2 <103638 ............................................................ 103579 AC009021.8 <1471 tttcatttgagaaaggtgacattttattattgctttattttgtatttctttgatttctag 1412 AC130466.2 <103578 ............................................................ 103519 AC009021.8 <1411 tgatgtgacatatacacttaatatgtaccagccagtttataatttttctattattaattg 1352 AC130466.2 <103518 ............................................................ 103459 AC009021.8 <1351 cattttcacatcctgtgtgcttttgtttgttgggtattcattgtttctttttgagttaaa 1292 AC130466.2 <103458 .........................................c.................. 103399 AC009021.8 <1291 ggagctgcttcgatgttaaggatatcatcataaatggcaaacatatattctgctgtgtat 1232 AC130466.2 <103398 ............................................................ 103339 AC009021.8 <1231 caattgcccttcagttttatttatgatggtttttgacataagttgttactgttttttatg 1172 AC130466.2 <103338 .........................................................g.. 103279 AC009021.8 <1171 tgttataatcaagtttgacagacttttcctttatgttttctgcatttggtgtcatgctta 1112 AC130466.2 <103278 ............................................................ 103219 AC009021.8 <1111 gaaaacccttctccatccctagtttctaaaattgttcacccatgttttcagtgtccttat 1052 AC130466.2 <103218 ............................................................ 103159 AC009021.8 <1051 ggtttatttttacataaaatttaaaaaaaactagaattaattttggggtatggtatgggc 992 AC130466.2 <103158 .....................a...................................... 103099 AC009021.8 <991 taagattctaacaaatttttcccagatgggtatcatgttgtctcaacataatgatgattg 932 AC130466.2 <103098 ............................................................ 103039 AC009021.8 <931 attaaaaatgccatatactacattgacttttatagatctatgtcaatttctggaaatttt 872 AC130466.2 <103038 ............................................................ 102979 AC009021.8 <871 attctgttccatcaatgtgtatgcctttgctacacatcactacagtgttttattacgtct 812 AC130466.2 <102978 ............................................................ 102919 AC009021.8 <811 ttataatatagtttcctatctattttaatgaatctctcttcttcttaaaactttggtcaa 752 AC130466.2 <102918 ............................................................ 102859 AC009021.8 <751 acttgtgttttcctttttctaaatgagattcttaaccaagggtgagcataaaaacaatct 692 AC130466.2 <102858 ............................................................ 102799 AC009021.8 <691 gtggaggactttaattaacctgcccagggctcacatcccagaaaattctgattcattggg 632 AC130466.2 <102798 ............................................................ 102739 AC009021.8 <631 tctggtgtgggagctgggcatctttcaaaaataaataaataacacatgcatatatacata 572 AC130466.2 <102738 ............................................................ 102679 AC009021.8 <571 atatatgcattatacataaaagactccctagttgatggggaggcccctagattaagaacc 512 AC130466.2 <102678 ............................................................ 102619 AC009021.8 <511 acagctcccacgtgagaacacatggacacatagaggggagcagcacacactggggcctat 452 AC130466.2 <102618 ............................................................ 102559 AC009021.8 <451 tggagggtggaaggtgggagaaggaaaaggattaggaaaaataattaatgagtactaggc 392 AC130466.2 <102558 ............................................................ 102499 AC009021.8 <391 ttaatacctggtgatgagacaagtttacctatgtaacaaacccgcacatgtaccctgaac 332 AC130466.2 <102498 ............................................................ 102439 AC009021.8 <331 ttaaaataaaagttaaaataaataaataagaagacaaaaccaaataaaaagaaccacagc 272 AC130466.2 <102438 ............................................................ 102379 AC009021.8 <271 cccagcttcaaaagatttttataatttcagaatcctgtgtcagagttcccctcttctccc 212 AC130466.2 <102378 ............................................................ 102319 AC009021.8 <211 acttctatcctgtttccaagtgcaagatgctccctgggggccacctggggtgctcttatg 152 AC130466.2 <102318 ............................................................ 102259 AC009021.8 <151 taattggtcttgaggatttagctcaggctttggggtttttgaaagcttcctcagtgattc 92 AC130466.2 <102258 ............................................a............... 102199 AC009021.8 <91 taacgtgcagtcagggttggtgatgactggtttagaaactccttctcagtcctgaccact 32 AC130466.2 <102198 ............................................................ 102139 AC009021.8 <31 aaatccttgctctactgtacagatagaattc 1 AC130466.2 <102138 ............................... 102108
Events
Id | Type | Date | Whodid | Comment |
91522 | InitHasAlign | 09/30/2006 14:23:39 | jcherry | blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' bandwidths: 501 701 1001 5001 Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730 Running blast for AC009021.8 and AC130466.2 Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' |
131291 | CreateSwitchPt | 08/08/2008 12:39:07 | chenhc | From Hs build 36.1 agp files |
91523 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
157423 | CreateSwitchPt | 11/11/2008 11:57:39 | chenhc | contig_builder 1.3 Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib |