Alignment last updated: 11/11/2008 11:57:39
Join Legend
Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Alignment for AC009021.8 and AC130466.2
Download Genome Workbench
Swap Rows Rotate Orientations
Swap Rows Rotate Orientations
AC009021.8 Homo sapiens chromosome 16 clone RP11-105C19, complete sequence [htgs_phase3]
Length: 176,219 bp
AC130466.2 Homo sapiens chromosome 16 clone CTC-591M7, complete sequence [htgs_phase3]
Length: 106,998 bp
Alignment Summary
Join evaluation: Alignment count: 1
|
| Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time | Id | Alignment | Releases |
| L | 1 | 102107 | - | - | chenhc | Taxid 9606 chrom 16 Primary assembly | 2008-08-08 12:39:07.670 | 20534 | 57910 | GRCh38, GRCh37, Hs36 |
| A | 1 | 102107 | - | - | chenhc | Taxid 9606 chrom 16 Primary assembly | 2008-11-11 11:57:39.006 | 46666 | 57910 |
Alignment 1 of 1
AC009021.8 : - : 4891..1 AC130466.2 : - : 106998..102108 Mismatches = 5, Gaps = 0, Length = 4891 Percent identity = 99.9% Score = 9657 bits (4871), Expect = 0 3 BAC and 34 Fosmid bridging clones. 3 BAC and 34 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AC009021.8 <4891 aagcttcagtggaagactttctgtaggggcagggagtgtagttacagggtttttccaggg 4832 AC130466.2 <106998 ............................................................ 106939 AC009021.8 <4831 ctttgcacctggaaaagaggtatgtcttgcagaccagaagaagaaactgggaaagaactc 4772 AC130466.2 <106938 ............................................................ 106879 AC009021.8 <4771 aaaggttcattcagggctgggctcaggttctcttgttatgtacagtgaggatgtctagca 4712 AC130466.2 <106878 ............................................................ 106819 AC009021.8 <4711 agatggtccttggtgagggaaggagagtctgagttgcaccaacctctgtggtccagagac 4652 AC130466.2 <106818 ............................................................ 106759 AC009021.8 <4651 tatcttgttgtgtcaagacagtgtgtgaaatgctataaggcttaagagttctgggagcaa 4592 AC130466.2 <106758 ............................................................ 106699 AC009021.8 <4591 gctaactgtggcaggattatacactttacttgtttagctagagtgtttttctaatttttc 4532 AC130466.2 <106698 ............................................................ 106639 AC009021.8 <4531 gggggagtaggggtgggagtttcttagtgtttgcttctcttttgttctctcttagcactt 4472 AC130466.2 <106638 ............................................................ 106579 AC009021.8 <4471 ggcaatttgaatatcccagctagcttagctctgctacagggctggggtggttatatccat 4412 AC130466.2 <106578 ............................................................ 106519 AC009021.8 <4411 gttggagcaaagctttaaaaggcagcatgattttttttgagattagaggtgaaattcttt 4352 AC130466.2 <106518 ............................................................ 106459 AC009021.8 <4351 aattcttcctttcttccttccatccatccccatccatccatccatccatccatccatttg 4292 AC130466.2 <106458 ............................................................ 106399 AC009021.8 <4291 tgtacccatttgatagcccatttatccttgcattcatccatccatttacccatttaataa 4232 AC130466.2 <106398 ............................................................ 106339 AC009021.8 <4231 cccattcgtccattcattattgcattcatccatccatttgctcatccttttatttaccca 4172 AC130466.2 <106338 ............................................................ 106279 AC009021.8 <4171 tacatttagccaacaaatatctctgagcacctgctgtgggccaggcactgttctaggcat 4112 AC130466.2 <106278 ............................................................ 106219 AC009021.8 <4111 tggagatacagcaacgaacaaaacagagacttgctcttaaggagcatacttcctagtggt 4052 AC130466.2 <106218 ............................................................ 106159 AC009021.8 <4051 aaaagataaatgacaaacaaatgcagtatgtagtataccaggtggtgacaagtgctttgg 3992 AC130466.2 <106158 ............................................................ 106099 AC009021.8 <3991 aaactataaatcagggaagggaaatagggagtgttaggggtgagcaattagaaaaggaat 3932 AC130466.2 <106098 ............................................................ 106039 AC009021.8 <3931 ttgagaggacaaaaccatggccacagattctagcagttcttccctaccaagagactttta 3872 AC130466.2 <106038 ............................................................ 105979 AC009021.8 <3871 agaacatgtgatattaacctagcgacctcctgaggcttattacattatagaaacagaggc 3812 AC130466.2 <105978 ............................................................ 105919 AC009021.8 <3811 agctcaatggcaggtggttgcccatgcacagagtcatttagcttgtgcacgcatacttga 3752 AC130466.2 <105918 ............................................................ 105859 AC009021.8 <3751 agaggacatctgccatttttgtctgtctagcatcaatcctaattcctgtaactacactct 3692 AC130466.2 <105858 ............................................................ 105799 AC009021.8 <3691 ggtttttcccttggggagccaatctgctccctttctcatggaccttcgtttagagggggc 3632 AC130466.2 <105798 ............................................................ 105739 AC009021.8 <3631 tgatctccctcccaagctttataatgaacatgtgacccaggattggctcagtaggttcat 3572 AC130466.2 <105738 ............................................................ 105679 AC009021.8 <3571 ttttcctggccacgtggatggtttcaggcattacctgaccatgtaaatctaaggagaatt 3512 AC130466.2 <105678 ............................................................ 105619 AC009021.8 <3511 cccctggactttgatgggagccagtgaagaggaggatctctcttttttgatggttataaa 3452 AC130466.2 <105618 ......................g..................................... 105559 AC009021.8 <3451 tatattataatgaaatgagatataatttaaacatctacaactgccagtggccacctttgc 3392 AC130466.2 <105558 ............................................................ 105499 AC009021.8 <3391 acctagggaagaggctacctgagaatgaagccagcacaaaggtgacctgggagatggaaa 3332 AC130466.2 <105498 ............................................................ 105439 AC009021.8 <3331 gagattaaatcttggatcatctgagcctggtccacctgtccctagaccatcagctttgtg 3272 AC130466.2 <105438 ............................................................ 105379 AC009021.8 <3271 agccaataattttttcgataaacttatgtcatttttgtttataacttttaagttcaagga 3212 AC130466.2 <105378 ............................................................ 105319 AC009021.8 <3211 tacaagtgcaggtttgttaacaggtaaacttgggccatgggggtttgtggtacagattat 3152 AC130466.2 <105318 ............................................................ 105259 AC009021.8 <3151 ttcatcacccaggtattaagcctggtacccattagttatttttcctgatcctctccctcc 3092 AC130466.2 <105258 ............................................................ 105199 AC009021.8 <3091 ttccactctccactttccaaaaaaccccagcatgtgttgctcccctctatgtgtccatgt 3032 AC130466.2 <105198 ............................................................ 105139 AC009021.8 <3031 gttctcatcatttagctcccacttgtaggtgagaacatgcagtatttggttttccattcc 2972 AC130466.2 <105138 ............................................................ 105079 AC009021.8 <2971 tgtgttagtttgctaaagataatagccttcagcttgatgcatgtccctgcaaaggttata 2912 AC130466.2 <105078 ............................................................ 105019 AC009021.8 <2911 atcttgttcttttttatggctgcatagtattccatgatgtatatgtaccacattttcttt 2852 AC130466.2 <105018 ............................................................ 104959 AC009021.8 <2851 atccagtttattattgatgggcatttaggttgattcattgtctttgctattgcgaatagc 2792 AC130466.2 <104958 ............................................................ 104899 AC009021.8 <2791 gctgcaatgaacatatcattgcatgtgtctttatagcagaatgttttatgttcctctggg 2732 AC130466.2 <104898 ............................................................ 104839 AC009021.8 <2731 tatgtacctagtaatgggattgctgggttgaatggtatttctgtctttaggtctttgagg 2672 AC130466.2 <104838 ............................................................ 104779 AC009021.8 <2671 aattgccacactgtcttctacaaactaacttacactcccaccaactgaactaacttacac 2612 AC130466.2 <104778 ............................................................ 104719 AC009021.8 <2611 tcccaccaactgtgtgtaagtgttcctttttctccacatggaggactgatgctctacctc 2552 AC130466.2 <104718 ............................................................ 104659 AC009021.8 <2551 accagcatctgtcattttttgactctttaatactagccattctgactggtattagacggt 2492 AC130466.2 <104658 ............................................................ 104599 AC009021.8 <2491 gtctcattgtagttttgatttacatttctctaatgatcagggatgttgggcttttattca 2432 AC130466.2 <104598 ............................................................ 104539 AC009021.8 <2431 aatgactgttggctgcatatatgtcttcttttgaaaagtgtcccaagaatcctgattaac 2372 AC130466.2 <104538 ............................................................ 104479 AC009021.8 <2371 atggtgctcagtgaatacttattgaatggataacatcagaactttgctggaaggaatctt 2312 AC130466.2 <104478 ............................................................ 104419 AC009021.8 <2311 aagaaattggaattctgctccctttgtccctatatttcacattgagaagttcaatgtgac 2252 AC130466.2 <104418 ............................................................ 104359 AC009021.8 <2251 ctctaaggtgacatcaactggctcttcgcaggtacctttaaaaagaagtttcatttatgt 2192 AC130466.2 <104358 ............................................................ 104299 AC009021.8 <2191 tcagaatcatgatgcataggaattagacatgccttctaagtatgtttaggtatgatttca 2132 AC130466.2 <104298 ............................................................ 104239 AC009021.8 <2131 gtgtatttcaaaagtaatacatgctcaatacagaaaacagaaaagcgcaaagaagaaaat 2072 AC130466.2 <104238 ............................................................ 104179 AC009021.8 <2071 aaaaattatgtatctatccagcccctaaataacttggcacaccaagtttttgctttgcat 2012 AC130466.2 <104178 ............................................................ 104119 AC009021.8 <2011 ccatgtttttaaaataaaatttagaatatactcaataaatctgtatttaaatctgtattt 1952 AC130466.2 <104118 ............................................................ 104059 AC009021.8 <1951 attttcactgaaaatatatttttactattttccatgccagtgattactctcccataacaa 1892 AC130466.2 <104058 ............................................................ 103999 AC009021.8 <1891 catatttgaccacaatctggaaagaatttaaagttctagaaaagtgcaaagaacaactta 1832 AC130466.2 <103998 ............................................................ 103939 AC009021.8 <1831 atagacatctatactcccaccctgtgctgttaacaactattaatattttattatgttcac 1772 AC130466.2 <103938 ............................................................ 103879 AC009021.8 <1771 tttcagtcatttttcaaagggaaaacagtacataggtagctaacgtctcctaccagtgag 1712 AC130466.2 <103878 ............................................................ 103819 AC009021.8 <1711 tctttatttatttttcacagttgtaaaggcactctgaagaatatcattattgagcctgta 1652 AC130466.2 <103818 ............................................................ 103759 AC009021.8 <1651 cacaatacaaaattatacgacctttgtgtacatccaccactccctcagggtgaagtcttg 1592 AC130466.2 <103758 ............................................................ 103699 AC009021.8 <1591 gaaatggtggaactgccagatcagtgggtgaatttgtactcctgcctgccataaatgata 1532 AC130466.2 <103698 ............................................................ 103639 AC009021.8 <1531 actcccttgtccctatattctagccaacactggctcattctaattcacttcaaaaaaaag 1472 AC130466.2 <103638 ............................................................ 103579 AC009021.8 <1471 tttcatttgagaaaggtgacattttattattgctttattttgtatttctttgatttctag 1412 AC130466.2 <103578 ............................................................ 103519 AC009021.8 <1411 tgatgtgacatatacacttaatatgtaccagccagtttataatttttctattattaattg 1352 AC130466.2 <103518 ............................................................ 103459 AC009021.8 <1351 cattttcacatcctgtgtgcttttgtttgttgggtattcattgtttctttttgagttaaa 1292 AC130466.2 <103458 .........................................c.................. 103399 AC009021.8 <1291 ggagctgcttcgatgttaaggatatcatcataaatggcaaacatatattctgctgtgtat 1232 AC130466.2 <103398 ............................................................ 103339 AC009021.8 <1231 caattgcccttcagttttatttatgatggtttttgacataagttgttactgttttttatg 1172 AC130466.2 <103338 .........................................................g.. 103279 AC009021.8 <1171 tgttataatcaagtttgacagacttttcctttatgttttctgcatttggtgtcatgctta 1112 AC130466.2 <103278 ............................................................ 103219 AC009021.8 <1111 gaaaacccttctccatccctagtttctaaaattgttcacccatgttttcagtgtccttat 1052 AC130466.2 <103218 ............................................................ 103159 AC009021.8 <1051 ggtttatttttacataaaatttaaaaaaaactagaattaattttggggtatggtatgggc 992 AC130466.2 <103158 .....................a...................................... 103099 AC009021.8 <991 taagattctaacaaatttttcccagatgggtatcatgttgtctcaacataatgatgattg 932 AC130466.2 <103098 ............................................................ 103039 AC009021.8 <931 attaaaaatgccatatactacattgacttttatagatctatgtcaatttctggaaatttt 872 AC130466.2 <103038 ............................................................ 102979 AC009021.8 <871 attctgttccatcaatgtgtatgcctttgctacacatcactacagtgttttattacgtct 812 AC130466.2 <102978 ............................................................ 102919 AC009021.8 <811 ttataatatagtttcctatctattttaatgaatctctcttcttcttaaaactttggtcaa 752 AC130466.2 <102918 ............................................................ 102859 AC009021.8 <751 acttgtgttttcctttttctaaatgagattcttaaccaagggtgagcataaaaacaatct 692 AC130466.2 <102858 ............................................................ 102799 AC009021.8 <691 gtggaggactttaattaacctgcccagggctcacatcccagaaaattctgattcattggg 632 AC130466.2 <102798 ............................................................ 102739 AC009021.8 <631 tctggtgtgggagctgggcatctttcaaaaataaataaataacacatgcatatatacata 572 AC130466.2 <102738 ............................................................ 102679 AC009021.8 <571 atatatgcattatacataaaagactccctagttgatggggaggcccctagattaagaacc 512 AC130466.2 <102678 ............................................................ 102619 AC009021.8 <511 acagctcccacgtgagaacacatggacacatagaggggagcagcacacactggggcctat 452 AC130466.2 <102618 ............................................................ 102559 AC009021.8 <451 tggagggtggaaggtgggagaaggaaaaggattaggaaaaataattaatgagtactaggc 392 AC130466.2 <102558 ............................................................ 102499 AC009021.8 <391 ttaatacctggtgatgagacaagtttacctatgtaacaaacccgcacatgtaccctgaac 332 AC130466.2 <102498 ............................................................ 102439 AC009021.8 <331 ttaaaataaaagttaaaataaataaataagaagacaaaaccaaataaaaagaaccacagc 272 AC130466.2 <102438 ............................................................ 102379 AC009021.8 <271 cccagcttcaaaagatttttataatttcagaatcctgtgtcagagttcccctcttctccc 212 AC130466.2 <102378 ............................................................ 102319 AC009021.8 <211 acttctatcctgtttccaagtgcaagatgctccctgggggccacctggggtgctcttatg 152 AC130466.2 <102318 ............................................................ 102259 AC009021.8 <151 taattggtcttgaggatttagctcaggctttggggtttttgaaagcttcctcagtgattc 92 AC130466.2 <102258 ............................................a............... 102199 AC009021.8 <91 taacgtgcagtcagggttggtgatgactggtttagaaactccttctcagtcctgaccact 32 AC130466.2 <102198 ............................................................ 102139 AC009021.8 <31 aaatccttgctctactgtacagatagaattc 1 AC130466.2 <102138 ............................... 102108
Events
| Id | Type | Date | Whodid | Comment |
| 91522 | InitHasAlign | 09/30/2006 14:23:39 | jcherry | blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' bandwidths: 501 701 1001 5001 Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730 Running blast for AC009021.8 and AC130466.2 Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' |
| 131291 | CreateSwitchPt | 08/08/2008 12:39:07 | chenhc | From Hs build 36.1 agp files |
| 91523 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
| 157423 | CreateSwitchPt | 11/11/2008 11:57:39 | chenhc | contig_builder 1.3 Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib |
Repeats
Too repeats, not showing repeat table.