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Human Genome Issue HG-305

Summary:
GeneID: 4321 (MMP12), poor quality (includes component misassembly)
Description:
There is a possible functional difference between the proteins encoded by RefSeq NM_002426.3 (MMP12) and the genomic region to which it aligns.
Status:
Resolved (GRC Resolved by Experimental Method)
Type:
Clone Problem
Last updated:
2014-10-01
Experiment type:
PCR
Affects version:
NCBI36
Fix version:
GRCh37.p6, GRCh37.p12, GRCh38
Resolution:
PCR_RP11_AP000789_1 confirms the sequence of NM_002426 and has been included in the TPF as a contained product.

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This patch contains FP885831.1, which has been used to correct a 1 nt deletion in NC_000011.9 component AP000789.5 that affects representation of MMP12 (NM_002426.4).
Revision history of patches and alts for HG-305
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p6 FIX HG305_PATCH JH159139.1 NW_003871077.1 MMP12

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)